TCONS_00013126 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013126
Unique NameTCONS_00013126
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1254

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013126 ID=TCONS_00013126|Name=TCONS_00013126|organism=Clytia hemisphaerica|type=transcript|length=1254bp
ttcagtgaaataaaaaattaataaatccaACGACCATAACTGATGGCAGA
TTTTTTGGCAGACAACAATGCATGTGGACAAACTATACTCAAATTGATCA
GCAGAGGGAATGCTATCATTGCAGAATTGTTACGCCTTTCTGACTTCATA
CCTCCCGTCTTCAAATTGGAAAGCAAAGAAGACAAAGATAAATATGGAGA
AATTTTGCTGGATTTTTCCTACTTCAGATCCATTGATCTGTTCGAGCATA
AACTAAACTCAAAACCAGAACTCCAAGACTTGGATGAAGAGTTTCGAGAA
AGCcacttggaaatattgaaaaGATTTTACTTTGCTTTCGAAAGTATTTT
CAAATATGTCACAGATTTAAACAGATACCTGGAAGATCTTGATGAAGGTA
TTTTCATTCAACAAACGTTGGAAAGTGTTTTACTGAACAACGATGGCAAA
CAGTTGATGTGTGAAGCTCTGTATTTGTATGGTGTTATGTTGTTGATTGT
GGATATGAAGTTTGAAGGAGACATCCGTGAACGCATGCTCGTATCATACA
ATCGATATTGTGCATCAACAGCAGCAATCGATTCGTACATGGATGACGTT
TGTAAGTTGTTAAGGAGCACAGGCTACTCAAATCAAGCCGGTAGTAAACG
TCCCCCAAAATATccggaagaatatttcaaaagagtTCCCATCTCAAAAA
CATTTATCGCCATGGTGATAGGAAGACTTCGTTCTGATGATATTTACAAC
CAGGTAGCATCGTACCCCTTACCAGAACACAGGAGCACAGCACTTGCTAA
CCATGCAGCCATGCTTTACGTCATCTTGTACTTCTCACCACAGATCTTAA
ACAATCAACAGGCCGTCATGAGGGAAGTGGTCGATAAACATTTCCCTGAT
AATTGGGTGATCAGTATATACATGGGGACGATTGTGAACTTGATCGACGC
ATGGGATCCTTATAAAGCCGCACGAAACGCTCTCAATAACACTGTCGACA
TGCAGAACGTCAAAAATGTGGCTTCAAGACATATCGACAATGTGAAAAGT
CTGAACAGTCAGGTTTTAGCGTATTTGAAAGAAGGTGTTCTAGTTGAAGA
ATTTGTACTGGACAACATTCCGAAGCTAATGAATCTGCTACGTGAATGCA
ATGTCACTTATAGATGGCTGATGTTGCATACTGCTGATGGCAGTAAGTCT
AAATTTCATCTTTAATATATATAAGATATAAGACATAAGACTACAATTAA
TCTG
Run BLAST on NCBI

protein sequence of TCONS_00013126-protein

>TCONS_00013126-protein ID=TCONS_00013126-protein|Name=TCONS_00013126-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
MADFLADNNACGQTILKLISRGNAIIAELLRLSDFIPPVFKLESKEDKDK
YGEILLDFSYFRSIDLFEHKLNSKPELQDLDEEFRESHLEILKRFYFAFE
SIFKYVTDLNRYLEDLDEGIFIQQTLESVLLNNDGKQLMCEALYLYGVML
LIVDMKFEGDIRERMLVSYNRYCASTAAIDSYMDDVCKLLRSTGYSNQAG
SKRPPKYPEEYFKRVPISKTFIAMVIGRLRSDDIYNQVASYPLPEHRSTA
LANHAAMLYVILYFSPQILNNQQAVMREVVDKHFPDNWVISIYMGTIVNL
IDAWDPYKAARNALNNTVDMQNVKNVASRHIDNVKSLNSQVLAYLKEGVL
VEEFVLDNIPKLMNLLRECNVTYRWLMLHTADGSKSKFHL
Run BLAST on NCBI

transcript from alignment at sc0000162:370033..373041+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013126 ID=TCONS_00013126|Name=TCONS_00013126|organism=Clytia hemisphaerica|type=transcript|length=3009bp|location=Sequence derived from alignment at sc0000162:370033..373041+ (Clytia hemisphaerica)
ttcagtgaaataaaaaattaataaatccaACGACCATAACTGATGGCAGA
TTTTTTGGCAGACAACAATGCATGTGGACAAACTATACTCAAATTGATCA
GCAGAGGGAATGCTATCATTGCAGAATTGTTACGCCTTTCTGACTTCATA
CCTCCCGTCTTCAAATTGGAAAGCAAAGAAGACAAAGATAAATATGGAGA
AATTTTGCTGGATTTTTCCTACTTCAGATCCATTGATCTGTTCGAGCATA
AACTAAACTCAAAACCAGTAAGTGAATCTTGGCCAACGTTTTATTGTGCA
AAAGTTACGCTACGGAAGCCGAACTTTCAGTGAAGTtataattagaattt
ttttctgattgatCTGATACTTTCAATCTTGTGGCAATTTACTCCTTgat
ctttgttcaaaaaattggaacttgaaatttatttatttcaatttttgtat
GGTTAGGAACTCCAAGACTTGGATGAAGAGTTTCGAGAAAGCcacttgga
aatattgaaaaGATTTTACTTTGCTTTCGAAAGTATTTTCAAATATGTCA
CAGATTTAAACAGGTATTGCATTGCtcttcaaaatttattcaaatctGTT
TTCAATCGTCGTGATTTTCCCATAAAGATTTAGCtagtaggaaatcctac
ctaggtaaATCAATGGCAACAATGTTTTTTGCGATAttcctttttttgct
tggaaaagtaTAAATCACTCCATctatctagctcttcgggctttacagaa
aacTGTAACTGTAGATATTCCATTCTTTCACTTTAGATACCTGGAAGATC
TTGATGAAGGTATTTTCATTCAACAAACGTTGGAAAGTGTTTTACTGAAC
AACGATGGCAAACAGTTGATGTGTGAAGCTCTGTATTTGTATGGTGTTAT
GTTGTTGATTGTGGATATGAAGTTTGAAGGAGACATCCGTGAACGCATGC
TCGTATCATACAATCGATATTGGTATTCACACCTAATTTTCTATTGGATT
TCACTTATGTTACACTAATACATCAGCTGCGATACACGCTTTATTATAGG
AAAAACCTCCCTCGGTTCTAGCCTGAATTCAGCCTCATTAATACCACTTT
CCTCCCTTCTTCATTGAAACGTTCTTCTACCTGAACTATTTCAagacatt
tttggacctaccccggtggggtggaggtcctataaatcaacttgtgttcg
tccgtccgtccgtccgtctagATATCAACAAATAAACGAAGcacattttg
aaagaaacatTCACATTGATTTTTTAGTGCATCAACAGCAGCAATCGATT
CGTACATGGATGACGTTTGTAAGTTGTTAAGGAGCACAGGCTACTCAAAT
CAAGCCGGTAGTAAACGTCCCCCAAAATATccggaagaatatttcaaaag
agtTCCCATCTCAAAAACATTTATCGCCATGGTGATAGGAAGACTTCGTT
CTGATGATATTTACAACCAGGTATAATTTACCAACCTTTCTCAGGATAAT
AATAATAAGGATAATAATAATTATGTTTAGCccttttttgaggaaaatgg
tACCGTTATATAAATTTGACATTGgaatacaatcatggtcgaaatgtATT
GGGATTTTGTGTACTTTCACGTTTTTCAGAAAGTTTGGGCGAGAATTGCG
ATCTCAGTACTCACActttattttatcaaatatttggATTTTAGAGGTGT
TCAGTTGCTTCTAGGGTACATTCCCTTGTTGGAGCAAATTCGAGTTTTTC
AAtcagttaaaactctaccttcCAGAAGTAACTTAGAGCACTGAAAAATC
ATTCggggtgtttaaaattttgcagggaCTTCCCcttatcaaatattttt
attaataaTGCTGATGGGTTGAACAGGTCAACTGATTTTGATCATTGAAT
TCCTTCTTTTCTTATgagaaacttttatttataaattACGTCCTTGCTTC
CAGGTAGCATCGTACCCCTTACCAGAACACAGGAGCACAGCACTTGCTAA
CCATGCAGCCATGCTTTACGTCATCTTGTACTTCTCACCACAGATCTTAA
ACAATCAACAGGCCGTCATGAGGGAAGTGGTCGATAAACATTTCCCTGAT
AATTGGGTATGCAAATCTTCCTTTGTCATACTTGACCACAAGATTGTTCC
ATTCGTTAGGTTTTCTAAAATATAATGCATTACAAAGTATATTTATATTT
TgctattcaattttaaaaactgaaaTGAAATGTTAAATAGTTTTTCAAAA
GCCCCAAAACTTGAGACAAAACCCCTTTATTTAATAAATACTGGCTTAAT
TTTCTACCATACTCAAACGTGTTTTGTATCATTGAAAGCTGTTCTATTCA
ATAGGTGATCAGTATATACATGGGGACGATTGTGAACTTGATCGACGCAT
GGGATCCTTATAAAGCCGCACGAAACGCTCTCAATAACACTGTCGACATG
CAGAACGTCAAAAATGTGGTATGAAAAACAAATTCTCTGTATCCCATATT
AATATTTCGTTGTAATTTGTAATTGCTTATCAAACACTCTAATTTTCATC
accaaaaagaaattaaaaacgATTTATTAAATCTTCTTTTTAGGCTTCAA
GACATATCGACAATGTGAAAAGTCTGAACAGTCAGGTACTGTTTATCACT
TGTTTTATGCATTTAAGTCGAGGTTTGAATAAAGGCATGACAAATCTAAA
CCTCGATGTTATGGCCACATAAAACCTAACTGAGCTAAATTATTTAACAT
TGGGTTATGATAGATGTTTACTGGGTTCACTTACAACTAATAAATATCCT
TTTTTACTTGTCTCAAGGTTTTAGCGTATTTGAAAGAAGGTGTTCTAGTT
GAAGAATTTGTACTGGACAACATTCCGAAGCTAATGAATCTGCTACGTGA
ATGCAATGTCACTTATAGATGGCTGATGTTGCATACTGCTGATGGCAGTA
AGTCTAAATTTCATCTTTAATATATATAAGATATAAGACATAAGACTACA
ATTAATCTG

Coding sequence (CDS) from alignment at sc0000162:370033..373041+

>TCONS_00013126 ID=TCONS_00013126|Name=TCONS_00013126|organism=Clytia hemisphaerica|type=CDS|length=9384bp|location=Sequence derived from alignment at sc0000162:370033..373041+ (Clytia hemisphaerica)
ATGGCAGATTTTTTGGCAGACAACAATGCATGTGGACAAACTATACTCAA
ATTGATCAGCAGAGGGAATGCTATCATTGCAGAATTGTTACGCCTTTCTG
ACTTCATACCTCCCGTCTTCAAATTGGAAAGCAAAGAAGACAAAGATAAA
TATGGAGAAATTTTGCTGGATTTTTCCTACTTCAGATCCATTGATCTGTT
CGAGCATAAACTAAACTCAAAACCAGAACTCCAAGACTTGGATGAAGAGT
TTCGAGAAAGCcacttggaaatattgaaaaGATTTTACTTTGCTTTCGAA
AGTATTTTCAAATATGTCACAGATTTAAACAGATACCTGGAAGATCTTGA
TGAAGGTATTTTCATTCAACAAACGTTGGAAAGTGTTTTACTGAACAACG
ATGGCAAACAGTTGATGTGTGAAGCTCTGTATTTGTATGGTGTTATGTTG
TTGATTGTGGATATGAAGTTTGAAGGAGACATCCGTGAACGCATGCTCGT
ATCATACAATCGATATTGTGCATCAACAGCAGCAATCGATTCGTACATGG
ATGACGTTTGTAAGTTGTTAAGGAGCACAGGCTACTCAAATCAAGCCGGT
AGTAAACGTCCCCCAAAATATccggaagaatatttcaaaagagtTCCCAT
CTCAAAAACATTTATCGCCATGGTGATAGGAAGACTTCGTTCTGATGATA
TTTACAACCAGGTAGCATCGTACCCCTTACCAGAACACAGGAGCACAGCA
CTTGCTAACCATGCAGCCATGCTTTACGTCATCTTGTACTTCTCACCACA
GATCTTAAACAATCAACAGGCCGTCATGAGGGAAGTGGTCGATAAACATT
TCCCTGATAATTGGGTGATCAGTATATACATGGGGACGATTGTGAACTTG
ATCGACGCATGGGATCCTTATAAAGCCGCACGAAACGCTCTCAATAACAC
TGTCGACATGCAGAACGTCAAAAATGTGGCTTCAAGACATATCGACAATG
TGAAAAGTCTGAACAGTCAGGTTTTAGCGTATTTGAAAGAAGGTGTTCTA
GTTGAAGAATTTGTACTGGACAACATTCCGAAGCTAATGAATCTGCTACG
TGAATGCAATGTCACTTATAGATGGCTGATGTTGCATACTGCTGATGGCA
GTAAGTCTAAATTTCATCTTTAAATGGCAGATTTTTTGGCAGACAACAAT
GCATGTGGACAAACTATACTCAAATTGATCAGCAGAGGGAATGCTATCAT
TGCAGAATTGTTACGCCTTTCTGACTTCATACCTCCCGTCTTCAAATTGG
AAAGCAAAGAAGACAAAGATAAATATGGAGAAATTTTGCTGGATTTTTCC
TACTTCAGATCCATTGATCTGTTCGAGCATAAACTAAACTCAAAACCAGA
ACTCCAAGACTTGGATGAAGAGTTTCGAGAAAGCcacttggaaatattga
aaaGATTTTACTTTGCTTTCGAAAGTATTTTCAAATATGTCACAGATTTA
AACAGATACCTGGAAGATCTTGATGAAGGTATTTTCATTCAACAAACGTT
GGAAAGTGTTTTACTGAACAACGATGGCAAACAGTTGATGTGTGAAGCTC
TGTATTTGTATGGTGTTATGTTGTTGATTGTGGATATGAAGTTTGAAGGA
GACATCCGTGAACGCATGCTCGTATCATACAATCGATATTGTGCATCAAC
AGCAGCAATCGATTCGTACATGGATGACGTTTGTAAGTTGTTAAGGAGCA
CAGGCTACTCAAATCAAGCCGGTAGTAAACGTCCCCCAAAATATccggaa
gaatatttcaaaagagtTCCCATCTCAAAAACATTTATCGCCATGGTGAT
AGGAAGACTTCGTTCTGATGATATTTACAACCAGGTAGCATCGTACCCCT
TACCAGAACACAGGAGCACAGCACTTGCTAACCATGCAGCCATGCTTTAC
GTCATCTTGTACTTCTCACCACAGATCTTAAACAATCAACAGGCCGTCAT
GAGGGAAGTGGTCGATAAACATTTCCCTGATAATTGGGTGATCAGTATAT
ACATGGGGACGATTGTGAACTTGATCGACGCATGGGATCCTTATAAAGCC
GCACGAAACGCTCTCAATAACACTGTCGACATGCAGAACGTCAAAAATGT
GGCTTCAAGACATATCGACAATGTGAAAAGTCTGAACAGTCAGGTTTTAG
CGTATTTGAAAGAAGGTGTTCTAGTTGAAGAATTTGTACTGGACAACATT
CCGAAGCTAATGAATCTGCTACGTGAATGCAATGTCACTTATAGATGGCT
GATGTTGCATACTGCTGATGGCAGTAAGTCTAAATTTCATCTTTAAATGG
CAGATTTTTTGGCAGACAACAATGCATGTGGACAAACTATACTCAAATTG
ATCAGCAGAGGGAATGCTATCATTGCAGAATTGTTACGCCTTTCTGACTT
CATACCTCCCGTCTTCAAATTGGAAAGCAAAGAAGACAAAGATAAATATG
GAGAAATTTTGCTGGATTTTTCCTACTTCAGATCCATTGATCTGTTCGAG
CATAAACTAAACTCAAAACCAGAACTCCAAGACTTGGATGAAGAGTTTCG
AGAAAGCcacttggaaatattgaaaaGATTTTACTTTGCTTTCGAAAGTA
TTTTCAAATATGTCACAGATTTAAACAGATACCTGGAAGATCTTGATGAA
GGTATTTTCATTCAACAAACGTTGGAAAGTGTTTTACTGAACAACGATGG
CAAACAGTTGATGTGTGAAGCTCTGTATTTGTATGGTGTTATGTTGTTGA
TTGTGGATATGAAGTTTGAAGGAGACATCCGTGAACGCATGCTCGTATCA
TACAATCGATATTGTGCATCAACAGCAGCAATCGATTCGTACATGGATGA
CGTTTGTAAGTTGTTAAGGAGCACAGGCTACTCAAATCAAGCCGGTAGTA
AACGTCCCCCAAAATATccggaagaatatttcaaaagagtTCCCATCTCA
AAAACATTTATCGCCATGGTGATAGGAAGACTTCGTTCTGATGATATTTA
CAACCAGGTAGCATCGTACCCCTTACCAGAACACAGGAGCACAGCACTTG
CTAACCATGCAGCCATGCTTTACGTCATCTTGTACTTCTCACCACAGATC
TTAAACAATCAACAGGCCGTCATGAGGGAAGTGGTCGATAAACATTTCCC
TGATAATTGGGTGATCAGTATATACATGGGGACGATTGTGAACTTGATCG
ACGCATGGGATCCTTATAAAGCCGCACGAAACGCTCTCAATAACACTGTC
GACATGCAGAACGTCAAAAATGTGGCTTCAAGACATATCGACAATGTGAA
AAGTCTGAACAGTCAGGTTTTAGCGTATTTGAAAGAAGGTGTTCTAGTTG
AAGAATTTGTACTGGACAACATTCCGAAGCTAATGAATCTGCTACGTGAA
TGCAATGTCACTTATAGATGGCTGATGTTGCATACTGCTGATGGCAGTAA
GTCTAAATTTCATCTTTAAATGGCAGATTTTTTGGCAGACAACAATGCAT
GTGGACAAACTATACTCAAATTGATCAGCAGAGGGAATGCTATCATTGCA
GAATTGTTACGCCTTTCTGACTTCATACCTCCCGTCTTCAAATTGGAAAG
CAAAGAAGACAAAGATAAATATGGAGAAATTTTGCTGGATTTTTCCTACT
TCAGATCCATTGATCTGTTCGAGCATAAACTAAACTCAAAACCAGAACTC
CAAGACTTGGATGAAGAGTTTCGAGAAAGCcacttggaaatattgaaaaG
ATTTTACTTTGCTTTCGAAAGTATTTTCAAATATGTCACAGATTTAAACA
GATACCTGGAAGATCTTGATGAAGGTATTTTCATTCAACAAACGTTGGAA
AGTGTTTTACTGAACAACGATGGCAAACAGTTGATGTGTGAAGCTCTGTA
TTTGTATGGTGTTATGTTGTTGATTGTGGATATGAAGTTTGAAGGAGACA
TCCGTGAACGCATGCTCGTATCATACAATCGATATTGTGCATCAACAGCA
GCAATCGATTCGTACATGGATGACGTTTGTAAGTTGTTAAGGAGCACAGG
CTACTCAAATCAAGCCGGTAGTAAACGTCCCCCAAAATATccggaagaat
atttcaaaagagtTCCCATCTCAAAAACATTTATCGCCATGGTGATAGGA
AGACTTCGTTCTGATGATATTTACAACCAGGTAGCATCGTACCCCTTACC
AGAACACAGGAGCACAGCACTTGCTAACCATGCAGCCATGCTTTACGTCA
TCTTGTACTTCTCACCACAGATCTTAAACAATCAACAGGCCGTCATGAGG
GAAGTGGTCGATAAACATTTCCCTGATAATTGGGTGATCAGTATATACAT
GGGGACGATTGTGAACTTGATCGACGCATGGGATCCTTATAAAGCCGCAC
GAAACGCTCTCAATAACACTGTCGACATGCAGAACGTCAAAAATGTGGCT
TCAAGACATATCGACAATGTGAAAAGTCTGAACAGTCAGGTTTTAGCGTA
TTTGAAAGAAGGTGTTCTAGTTGAAGAATTTGTACTGGACAACATTCCGA
AGCTAATGAATCTGCTACGTGAATGCAATGTCACTTATAGATGGCTGATG
TTGCATACTGCTGATGGCAGTAAGTCTAAATTTCATCTTTAAATGGCAGA
TTTTTTGGCAGACAACAATGCATGTGGACAAACTATACTCAAATTGATCA
GCAGAGGGAATGCTATCATTGCAGAATTGTTACGCCTTTCTGACTTCATA
CCTCCCGTCTTCAAATTGGAAAGCAAAGAAGACAAAGATAAATATGGAGA
AATTTTGCTGGATTTTTCCTACTTCAGATCCATTGATCTGTTCGAGCATA
AACTAAACTCAAAACCAGAACTCCAAGACTTGGATGAAGAGTTTCGAGAA
AGCcacttggaaatattgaaaaGATTTTACTTTGCTTTCGAAAGTATTTT
CAAATATGTCACAGATTTAAACAGATACCTGGAAGATCTTGATGAAGGTA
TTTTCATTCAACAAACGTTGGAAAGTGTTTTACTGAACAACGATGGCAAA
CAGTTGATGTGTGAAGCTCTGTATTTGTATGGTGTTATGTTGTTGATTGT
GGATATGAAGTTTGAAGGAGACATCCGTGAACGCATGCTCGTATCATACA
ATCGATATTGTGCATCAACAGCAGCAATCGATTCGTACATGGATGACGTT
TGTAAGTTGTTAAGGAGCACAGGCTACTCAAATCAAGCCGGTAGTAAACG
TCCCCCAAAATATccggaagaatatttcaaaagagtTCCCATCTCAAAAA
CATTTATCGCCATGGTGATAGGAAGACTTCGTTCTGATGATATTTACAAC
CAGGTAGCATCGTACCCCTTACCAGAACACAGGAGCACAGCACTTGCTAA
CCATGCAGCCATGCTTTACGTCATCTTGTACTTCTCACCACAGATCTTAA
ACAATCAACAGGCCGTCATGAGGGAAGTGGTCGATAAACATTTCCCTGAT
AATTGGGTGATCAGTATATACATGGGGACGATTGTGAACTTGATCGACGC
ATGGGATCCTTATAAAGCCGCACGAAACGCTCTCAATAACACTGTCGACA
TGCAGAACGTCAAAAATGTGGCTTCAAGACATATCGACAATGTGAAAAGT
CTGAACAGTCAGGTTTTAGCGTATTTGAAAGAAGGTGTTCTAGTTGAAGA
ATTTGTACTGGACAACATTCCGAAGCTAATGAATCTGCTACGTGAATGCA
ATGTCACTTATAGATGGCTGATGTTGCATACTGCTGATGGCAGTAAGTCT
AAATTTCATCTTTAAATGGCAGATTTTTTGGCAGACAACAATGCATGTGG
ACAAACTATACTCAAATTGATCAGCAGAGGGAATGCTATCATTGCAGAAT
TGTTACGCCTTTCTGACTTCATACCTCCCGTCTTCAAATTGGAAAGCAAA
GAAGACAAAGATAAATATGGAGAAATTTTGCTGGATTTTTCCTACTTCAG
ATCCATTGATCTGTTCGAGCATAAACTAAACTCAAAACCAGAACTCCAAG
ACTTGGATGAAGAGTTTCGAGAAAGCcacttggaaatattgaaaaGATTT
TACTTTGCTTTCGAAAGTATTTTCAAATATGTCACAGATTTAAACAGATA
CCTGGAAGATCTTGATGAAGGTATTTTCATTCAACAAACGTTGGAAAGTG
TTTTACTGAACAACGATGGCAAACAGTTGATGTGTGAAGCTCTGTATTTG
TATGGTGTTATGTTGTTGATTGTGGATATGAAGTTTGAAGGAGACATCCG
TGAACGCATGCTCGTATCATACAATCGATATTGTGCATCAACAGCAGCAA
TCGATTCGTACATGGATGACGTTTGTAAGTTGTTAAGGAGCACAGGCTAC
TCAAATCAAGCCGGTAGTAAACGTCCCCCAAAATATccggaagaatattt
caaaagagtTCCCATCTCAAAAACATTTATCGCCATGGTGATAGGAAGAC
TTCGTTCTGATGATATTTACAACCAGGTAGCATCGTACCCCTTACCAGAA
CACAGGAGCACAGCACTTGCTAACCATGCAGCCATGCTTTACGTCATCTT
GTACTTCTCACCACAGATCTTAAACAATCAACAGGCCGTCATGAGGGAAG
TGGTCGATAAACATTTCCCTGATAATTGGGTGATCAGTATATACATGGGG
ACGATTGTGAACTTGATCGACGCATGGGATCCTTATAAAGCCGCACGAAA
CGCTCTCAATAACACTGTCGACATGCAGAACGTCAAAAATGTGGCTTCAA
GACATATCGACAATGTGAAAAGTCTGAACAGTCAGGTTTTAGCGTATTTG
AAAGAAGGTGTTCTAGTTGAAGAATTTGTACTGGACAACATTCCGAAGCT
AATGAATCTGCTACGTGAATGCAATGTCACTTATAGATGGCTGATGTTGC
ATACTGCTGATGGCAGTAAGTCTAAATTTCATCTTTAAATGGCAGATTTT
TTGGCAGACAACAATGCATGTGGACAAACTATACTCAAATTGATCAGCAG
AGGGAATGCTATCATTGCAGAATTGTTACGCCTTTCTGACTTCATACCTC
CCGTCTTCAAATTGGAAAGCAAAGAAGACAAAGATAAATATGGAGAAATT
TTGCTGGATTTTTCCTACTTCAGATCCATTGATCTGTTCGAGCATAAACT
AAACTCAAAACCAGAACTCCAAGACTTGGATGAAGAGTTTCGAGAAAGCc
acttggaaatattgaaaaGATTTTACTTTGCTTTCGAAAGTATTTTCAAA
TATGTCACAGATTTAAACAGATACCTGGAAGATCTTGATGAAGGTATTTT
CATTCAACAAACGTTGGAAAGTGTTTTACTGAACAACGATGGCAAACAGT
TGATGTGTGAAGCTCTGTATTTGTATGGTGTTATGTTGTTGATTGTGGAT
ATGAAGTTTGAAGGAGACATCCGTGAACGCATGCTCGTATCATACAATCG
ATATTGTGCATCAACAGCAGCAATCGATTCGTACATGGATGACGTTTGTA
AGTTGTTAAGGAGCACAGGCTACTCAAATCAAGCCGGTAGTAAACGTCCC
CCAAAATATccggaagaatatttcaaaagagtTCCCATCTCAAAAACATT
TATCGCCATGGTGATAGGAAGACTTCGTTCTGATGATATTTACAACCAGG
TAGCATCGTACCCCTTACCAGAACACAGGAGCACAGCACTTGCTAACCAT
GCAGCCATGCTTTACGTCATCTTGTACTTCTCACCACAGATCTTAAACAA
TCAACAGGCCGTCATGAGGGAAGTGGTCGATAAACATTTCCCTGATAATT
GGGTGATCAGTATATACATGGGGACGATTGTGAACTTGATCGACGCATGG
GATCCTTATAAAGCCGCACGAAACGCTCTCAATAACACTGTCGACATGCA
GAACGTCAAAAATGTGGCTTCAAGACATATCGACAATGTGAAAAGTCTGA
ACAGTCAGGTTTTAGCGTATTTGAAAGAAGGTGTTCTAGTTGAAGAATTT
GTACTGGACAACATTCCGAAGCTAATGAATCTGCTACGTGAATGCAATGT
CACTTATAGATGGCTGATGTTGCATACTGCTGATGGCAGTAAGTCTAAAT
TTCATCTTTAAATGGCAGATTTTTTGGCAGACAACAATGCATGTGGACAA
ACTATACTCAAATTGATCAGCAGAGGGAATGCTATCATTGCAGAATTGTT
ACGCCTTTCTGACTTCATACCTCCCGTCTTCAAATTGGAAAGCAAAGAAG
ACAAAGATAAATATGGAGAAATTTTGCTGGATTTTTCCTACTTCAGATCC
ATTGATCTGTTCGAGCATAAACTAAACTCAAAACCAGAACTCCAAGACTT
GGATGAAGAGTTTCGAGAAAGCcacttggaaatattgaaaaGATTTTACT
TTGCTTTCGAAAGTATTTTCAAATATGTCACAGATTTAAACAGATACCTG
GAAGATCTTGATGAAGGTATTTTCATTCAACAAACGTTGGAAAGTGTTTT
ACTGAACAACGATGGCAAACAGTTGATGTGTGAAGCTCTGTATTTGTATG
GTGTTATGTTGTTGATTGTGGATATGAAGTTTGAAGGAGACATCCGTGAA
CGCATGCTCGTATCATACAATCGATATTGTGCATCAACAGCAGCAATCGA
TTCGTACATGGATGACGTTTGTAAGTTGTTAAGGAGCACAGGCTACTCAA
ATCAAGCCGGTAGTAAACGTCCCCCAAAATATccggaagaatatttcaaa
agagtTCCCATCTCAAAAACATTTATCGCCATGGTGATAGGAAGACTTCG
TTCTGATGATATTTACAACCAGGTAGCATCGTACCCCTTACCAGAACACA
GGAGCACAGCACTTGCTAACCATGCAGCCATGCTTTACGTCATCTTGTAC
TTCTCACCACAGATCTTAAACAATCAACAGGCCGTCATGAGGGAAGTGGT
CGATAAACATTTCCCTGATAATTGGGTGATCAGTATATACATGGGGACGA
TTGTGAACTTGATCGACGCATGGGATCCTTATAAAGCCGCACGAAACGCT
CTCAATAACACTGTCGACATGCAGAACGTCAAAAATGTGGCTTCAAGACA
TATCGACAATGTGAAAAGTCTGAACAGTCAGGTTTTAGCGTATTTGAAAG
AAGGTGTTCTAGTTGAAGAATTTGTACTGGACAACATTCCGAAGCTAATG
AATCTGCTACGTGAATGCAATGTCACTTATAGATGGCTGATGTTGCATAC
TGCTGATGGCAGTAAGTCTAAATTTCATCTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007332XLOC_007332Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013126-exon-sc0000162-1491911889:370033..370299TCONS_00013126-exon-sc0000162-1491911889:370033..370299Clytia hemisphaericaexon
TCONS_00013126-exon-sc0000162-1510915933:370033..370299TCONS_00013126-exon-sc0000162-1510915933:370033..370299Clytia hemisphaericaexon
TCONS_00013126-exon-sc0000162-1575043694:370033..370299TCONS_00013126-exon-sc0000162-1575043694:370033..370299Clytia hemisphaericaexon
TCONS_00013126-exon-sc0000162-1491911889:370489..370595TCONS_00013126-exon-sc0000162-1491911889:370489..370595Clytia hemisphaericaexon
TCONS_00013126-exon-sc0000162-1510915933:370489..370595TCONS_00013126-exon-sc0000162-1510915933:370489..370595Clytia hemisphaericaexon
TCONS_00013126-exon-sc0000162-1575043694:370489..370595TCONS_00013126-exon-sc0000162-1575043694:370489..370595Clytia hemisphaericaexon
TCONS_00013126-exon-sc0000162-1491911889:370819..371004TCONS_00013126-exon-sc0000162-1491911889:370819..371004Clytia hemisphaericaexon
TCONS_00013126-exon-sc0000162-1510915933:370819..371004TCONS_00013126-exon-sc0000162-1510915933:370819..371004Clytia hemisphaericaexon
TCONS_00013126-exon-sc0000162-1575043694:370819..371004TCONS_00013126-exon-sc0000162-1575043694:370819..371004Clytia hemisphaericaexon
TCONS_00013126-exon-sc0000162-1491911889:371310..371502TCONS_00013126-exon-sc0000162-1491911889:371310..371502Clytia hemisphaericaexon
TCONS_00013126-exon-sc0000162-1510915933:371310..371502TCONS_00013126-exon-sc0000162-1510915933:371310..371502Clytia hemisphaericaexon
TCONS_00013126-exon-sc0000162-1575043694:371310..371502TCONS_00013126-exon-sc0000162-1575043694:371310..371502Clytia hemisphaericaexon
TCONS_00013126-exon-sc0000162-1491911889:371986..372138TCONS_00013126-exon-sc0000162-1491911889:371986..372138Clytia hemisphaericaexon
TCONS_00013126-exon-sc0000162-1510915933:371986..372138TCONS_00013126-exon-sc0000162-1510915933:371986..372138Clytia hemisphaericaexon
TCONS_00013126-exon-sc0000162-1575043694:371986..372138TCONS_00013126-exon-sc0000162-1575043694:371986..372138Clytia hemisphaericaexon
TCONS_00013126-exon-sc0000162-1491911889:372387..372500TCONS_00013126-exon-sc0000162-1491911889:372387..372500Clytia hemisphaericaexon
TCONS_00013126-exon-sc0000162-1510915933:372387..372500TCONS_00013126-exon-sc0000162-1510915933:372387..372500Clytia hemisphaericaexon
TCONS_00013126-exon-sc0000162-1575043694:372387..372500TCONS_00013126-exon-sc0000162-1575043694:372387..372500Clytia hemisphaericaexon
TCONS_00013126-exon-sc0000162-1491911889:372626..372667TCONS_00013126-exon-sc0000162-1491911889:372626..372667Clytia hemisphaericaexon
TCONS_00013126-exon-sc0000162-1510915933:372626..372667TCONS_00013126-exon-sc0000162-1510915933:372626..372667Clytia hemisphaericaexon
TCONS_00013126-exon-sc0000162-1575043694:372626..372667TCONS_00013126-exon-sc0000162-1575043694:372626..372667Clytia hemisphaericaexon
TCONS_00013126-exon-sc0000162-1491911889:372850..373041TCONS_00013126-exon-sc0000162-1491911889:372850..373041Clytia hemisphaericaexon
TCONS_00013126-exon-sc0000162-1510915933:372850..373041TCONS_00013126-exon-sc0000162-1510915933:372850..373041Clytia hemisphaericaexon
TCONS_00013126-exon-sc0000162-1575043694:372850..373041TCONS_00013126-exon-sc0000162-1575043694:372850..373041Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013126-proteinTCONS_00013126-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:370033..373041 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.5983	24.6313	16.4138	16.3969	11.6748	7.3081	11.6977	13.9751	14.3331	19.7029	17.5419	12.2097	17.431	19.2747	17.0802	21.764	25.3587	24.4767	14.508	17.4853	20.2201	18.7326	22.4605	26.2592	24.0938	25.4395	15.0829	10.93	27.9222	27.5653
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019393WASH_strumpellin
Vocabulary: Cellular Component
TermDefinition
GO:0071203WASH complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0071203 WASH complex
Blast
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BLAST of TCONS_00013126 vs. Swiss-Prot (Human)
Match: WASC5 (WASH complex subunit 5 OS=Homo sapiens GN=WASHC5 PE=1 SV=1)

HSP 1 Score: 583.948 bits (1504), Expect = 0.000e+0
Identity = 266/384 (69.27%), Postives = 330/384 (85.94%), Query Frame = 1 
Query:   43 MADFLADNNACGQTILKLISRGNAIIAELLRLSDFIPPVFKLESKEDKDKYGEILLDFSYFRSIDLFEHKLNSKPELQDLDEEFRESHLEILKRFYFAFESIFKYVTDLNRYLEDLDEGIFIQQTLESVLLNNDGKQLMCEALYLYGVMLLIVDMKFEGDIRERMLVSYNRYCASTAAIDSYMDDVCKLLRSTGYSNQAGSKRPPKYPEEYFKRVPISKTFIAMVIGRLRSDDIYNQVASYPLPEHRSTALANHAAMLYVILYFSPQILNNQQAVMREVVDKHFPDNWVISIYMGTIVNLIDAWDPYKAARNALNNTVDMQNVKNVASRHIDNVKSLNSQVLAYLKEGVLVEEFVLDNIPKLMNLLRECNVTYRWLMLHTADGS 1194
            M DFLA+NN CGQ IL+++S GNAIIAELLRLS+FIP VF+L+ + D+ KYG+I+ DFSYF+  +L+E KL++KPELQDLDEEFRE+++EI+ RFY AF+S+ KY+ DLNRYL+DL+EG++IQQTLE+VLLN DGKQL+CEALYLYGVMLL++D K EG++RERMLVSY RY A+ ++ DS MDD+CKLLRSTGYS+Q G+KRP  YPE YF+RVPI+++FI+MVIGRLRSDDIYNQV++YPLPEHRSTALAN AAMLYVILYF P IL+  QA MRE+VDK+FPDNWVISIYMG  VNL+DAW+PYKAA+ ALNNT+D+ NV+  ASR+    + +++QV  +LKEG L EE VLDNIPKL+N LR+CNV  RWLMLHTAD +
Sbjct:    1 MLDFLAENNLCGQAILRIVSCGNAIIAELLRLSEFIPAVFRLKDRADQQKYGDIIFDFSYFKGPELWESKLDAKPELQDLDEEFRENNIEIVTRFYLAFQSVHKYIVDLNRYLDDLNEGVYIQQTLETVLLNEDGKQLLCEALYLYGVMLLVIDQKIEGEVRERMLVSYYRYSAARSSADSNMDDICKLLRSTGYSSQPGAKRPSNYPESYFQRVPINESFISMVIGRLRSDDIYNQVSAYPLPEHRSTALANQAAMLYVILYFEPSILHTHQAKMREIVDKYFPDNWVISIYMGITVNLVDAWEPYKAAKTALNNTLDLSNVREQASRYATVSERVHAQVQQFLKEGYLREEMVLDNIPKLLNCLRDCNVAIRWLMLHTADSA 384
The following BLAST results are available for this feature:
BLAST of TCONS_00013126 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WASC50.000e+069.27WASH complex subunit 5 OS=Homo sapiens GN=WASHC5 P... [more]
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