TCONS_00013128 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013128
Unique NameTCONS_00013128
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3193

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013128 ID=TCONS_00013128|Name=TCONS_00013128|organism=Clytia hemisphaerica|type=transcript|length=3193bp
TTAGCTGGGATCTTGACTCCATCACTCATGAAGCTGTACCtttacaagca
aaaaataaaacattcttCACCtagaaaattttgcattttcgtTTAGTATC
TctttaaacaaaattaaaacctAACCAGAAAGATTTTCCCATTTGTGAAC
CATGTTCCTGGAAGTTCTTCCCAAATTCAGAACAATCTTCCCATTCGGGG
TAGTGGCAGGGACTGTCAGGGAAActtctaaaaaatcaaaaatgtatgAC
TGTATGAATTCACAAGTTCCTAATTCAAATTCTCTCAGAAAATTTCACCC
AATCTAGttaatatttttattgattttagaggtattgaaaaaaaattgat
aaatattAGATTAAACTTAAATGACATGTAAAGGTAAATGCAGAATACAC
AAGGTGTTAATAACACCGCCCATTTGAATACTGTATCAACACACAAGATT
ATCAAAATTCAGTCCCCATCTGTTGCAGCAAGCCTCTCAAATGCACAAAA
TGTGACGCTCAATAAGACTCAAGTCTTGAATTTATCACAAGGGGGACAAC
AGTTAATCACCGTTCAGCCAAGTGGATTGTCCTTTATTCCTATTCAAACT
GGAAATGGAACACAACTTGTTCAAGTTCAAATGCCTAATGCACAACAAAG
TGGTGCAAACTTTGTTCAGCTACAAACAAACCCTTCAAATCCAGCATCAA
CAACAAGAGTGTTGAATACAAACCAAACTTTAATTCCTGTTCAGAGAGTT
TTAACTCAAGGACAGGCTGGAAATGCAAATCAAAAAGTCTCAATTCAACT
AGTACAAACAGCTGGTGGATTGCAGAAGACAGCATCTTTAGTAGGAACAC
AGACTGCTGGAGAATCGACACAACATGAACTTACAACAAGGGCCACTAAC
CAGCCACAAGGCGCAACTGTATCTGTAAATACAAACCCTGCAAGCTTATT
ATCTGCTACAAACACCACTTCAACCATTTTTTACGCTTTACAACAGCAAG
CAGGTTCCTTACCACAATCTTCAATCAACACTGTAAATACAAATGTACAT
ACTCAAAGCATTATCACAAAGACACTTTCTTCAGTTCGTTTACCCCAACC
CAACATTGGGCAGCCAATCACAAAGACAAAGATTCCTTCTGCTGCTTCTG
GACTGCCAATCTCCTCTTCACCCGCCAAAAATATTCAGGGTCAACCAGTT
GTCATTGTTAGCAGGACTAACAATCAAGCTGTTTTCATTCCCAAGACTCA
AGCATCATCTCTTCCAACAAATCCAGTATTTCTTCCAATTACAATGGCAA
ATAATGTTTCTGTCCTAACAAATCAAACTTCAGCCTTGATGGCTACAAAG
AGAGGAGCTGGACAANGTTTCTGTCCTAACAAATCAAACTTCAGCCTTGA
TGGCTACAAAGAGAGGAGCTGGACAACCTTCCATTCCTGTTCGCCTTCAA
CAGCAACAGGTTGTTGCTGGTACAACTCAACCTCCCGGAGCTAACGAAAC
TCATGTGAATTTAGCTACTTTAAATCTCTTGAATCAAAATCAACAACAAC
CCAGAATTCTCATTCCATTAAATGCTACTGGCCTTCGTGGGATCCAGCAA
CCAAATCCACAATCTAGTCAACAAATAGTCTTTCAATCTCTGTCACAGAA
AGGATCTTTTGCACCATCACTTGGTAGTTTGCAGCAAaACAAGAAAGAAA
CTTTGGCAAACATTGTTCCAGGACCTAAACCAGCTGCAAGTATTTCTGTT
CCTTCCACTTCTACAAGCTCACTTGGAGAATCTAAACCATTGAAGAAACC
TTGTAACTGCACGAAGTCACAATGCTTGAAGCTGTATTGTGAATGTTTTG
CTAATGGTGAATTTTGTAACAACTGTAACTGCCGCAGCTGCTTAAACAAT
ATGCAACATGAAGCAGAACGAAGTAGAGCTatcaagCTTTGTTTGGAACG
CAACCAATACGCTTTTCATCCAAAAATTGGCAAAGGAAAAGTAAAAGGGG
ATAATGAACGAAGACATACAAAAGGTTGCAACTGTAAACGTTCTGGGTGC
CTCAAAAACTATTGTGAATGTTATGAGGCAAAAATACTTTGTTCTGCACT
GTGTCGCTGTGTTGGCTGCAAGAATTTCGAAGAATCTGATGATCGCAAAA
CATTAATGCAACTTGCAGATGCTGCAGaagCAAGAGTATTACAACAAAAT
GCTGCTAAAACTAAATTAGCATCGCAATTAGAAGTTGCTCCGAAAGTTTC
CAAAAAGATTACTGCAAAGGATAAgaaTGCTGCAACTTTTATAACAACAG
ATGTATCTAAAGCAGCTTGTGATATTTTGATGGCTACTGCGATGGAAGCT
GAAAAGAATAATTTATCCCCAGAGGAAGCAGAACGAACCCTTATTGTAGA
ATTTTCGAGATGTCTGGATCAAATTATTAACAAATCAAATACAGGGAAAA
GGTGACAATTGTTTTAAtagatcttttttttaatttttacttttGCAATA
CAAATTAGCTGAATATTAtaattgaaaagttttattatttatattttata
aaatcaaCCCCATTTATATAAATAGAATGTATCATATTACCCTCCCTGCT
GGTGTATATCTGTTTTACTTATACCATTTAtcgaaaatcagagaaaatac
TAATAATCTTGTGTGAAATTATTCTTAATTAGTCAATCTTATTTGAAGTT
TTTAAGTGAAGAAATAGAACTTGAGTTTAATTAGCCCtcaattttgccac
ttttagTAGTTTTAGTAAGTTCCCTTTGAGGGAGGTCACTCTAGCACTAG
ATTGTCTGTAGCAAAATTATGTTCAATAAGTTACCTTAACTACTTTAATT
TGCTTTAAATAGGACGATTCTGAAAGTGGATTGCTCTTAAATAGTTCTCA
TTTCTTGCCATTATTTTGAGCTTCATTGCTCTTAAAAGAGAAACAGAGTT
TTTGTTCATCGCTCCATGAAGCTGCTTTGTAGCCACCAAGGTAATGGACA
GCCTAGTATATTTATTTAAATCGAATCAGATCACCTACACGGTTTTTTTG
TAATAGTCCaggaaaaaaatggcaaaaatccCACCTTGAGTACTTTTAGA
GAAACTTTTGTAAAACATCGATGGTCAGCTtttattgaaactttcaaata
atttttttgaacatatttGCTTGCTTGATGTGTGCAAAGTTTC
Run BLAST on NCBI

protein sequence of TCONS_00013128-protein

>TCONS_00013128-protein ID=TCONS_00013128-protein|Name=TCONS_00013128-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
MQNTQGVNNTAHLNTVSTHKIIKIQSPSVAASLSNAQNVTLNKTQVLNLS
QGGQQLITVQPSGLSFIPIQTGNGTQLVQVQMPNAQQSGANFVQLQTNPS
NPASTTRVLNTNQTLIPVQRVLTQGQAGNANQKVSIQLVQTAGGLQKTAS
LVGTQTAGESTQHELTTRATNQPQGATVSVNTNPASLLSATNTTSTIFYA
LQQQAGSLPQSSINTVNTNVHTQSIITKTLSSVRLPQPNIGQPITKTKIP
SAASGLPISSSPAKNIQGQPVVIVSRTNNQAVFIPKTQASSLPTNPVFLP
ITMANNVSVLTNQTSALMATKRGAGQXFCPNKSNFSLDGYKERSWTTFHS
CSPSTATGCCWYNSTSRS
Run BLAST on NCBI

transcript from alignment at sc0000162:424820..432429+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013128 ID=TCONS_00013128|Name=TCONS_00013128|organism=Clytia hemisphaerica|type=transcript|length=7610bp|location=Sequence derived from alignment at sc0000162:424820..432429+ (Clytia hemisphaerica)
TTAGCTGGGATCTTGACTCCATCACTCATGAAGCTGTACCtttacaagca
aaaaataaaacattcttCACCtagaaaattttgcattttcgtTTAGTATC
TctttaaacaaaattaaaacctAACCAGAAAGATTTTCCCATTTGTGAAC
CATGTTCCTGGAAGTTCTTCCCAAATTCAGAACAATCTTCCCATTCGGGG
TAGTGGCAGGGACTGTCAGGGAAActtctaaaaaatcaaaaatgtatgAC
TGTATGAATTCACAAGTTCCTAATTCAAATTCTCTCAGAAAATTTCACCC
AATCTAGttaatatttttattgattttagaggtattgaaaaaaaattgat
aaatattAGATTAAACTTAAATGACATGTAAAGGTAAATGCAGAATACAC
AAGGTGTTAATAACACCGCCCATTTGAATACTGTATCAACACACAAGATT
ATCAAAATTCAGTCCCCATCTGTTGCAGCAAGCCTCTCAAATGCACAAAA
TGTGACGCTCAATAAGACTCAAGTCTTGAATTTATCACAAGGGGGACAAC
AGTTAATCACCGTTCAGCCAAGTGGATTGTCCTTTATTCCTATTCAAACT
GGAAATGGAACACAACTTGTTCAAGTTCAAATGCCTAATGCACAACAAAG
TGGTGCAAACTTTGTTCAGCTACAAACAAACCCTTCAAATCCAGCATCAA
CAACAAGAGTGTTGAATACAAACCAAACTTTAATTCCTGTTCAGAGAGTT
TTAACTCAAGGACAGGCTGGAAATGCAAATCAAAAAGTCTCAATTCAACT
AGTACAAACAGCTGGTGGATTGCAGAAGACAGCATCTTTAGTAGGAACAC
AGACTGCTGGAGAATCGACACAACATGAACTTACAACAAGGGCCACTAAC
CAGCCACAAGGCGCAACTGTATCTGTAAATACAAACCCTGCAAGCTTATT
ATCTGCTACAAACACCACTTCAACCATTTTTTACGCTTTACAACAGCAAG
CAGGTTTGTAAAATTTTGCCTTGACTTCTTTTCAGCTGGGTTGCATTTCA
TAATAAGGAGGATAAAAGTTGCAATAAACAGATTTTATTGTTGGTTCTTA
AATTATCTTTCAGGTTCCTTACCACAATCTTCAATCAACACTGTAAATAC
AAATGTACATACTCAAAGCATTATCACAAAGACACTTTCTTCAGTTCGTT
TACCCCAACCCAACATTGGGCAGCCAATCACAAAGACAAAGATTCCTTCT
GCTGCTTCTGGACTGCCAATCTCCTCTTCACCCGCCAAAAATATTCAGGG
TATGCTCTTGATTGCTTGACCCCCTATTCTATCATCCTTTTTGGCGTGGT
GTTGATGTAACAAttgtttgtttcttttaaaGACTATACTTGTATAAAAA
GCTGCTTGCTGATCTTGCAAAAGCAATACAAATTATTTACTTGATCTATC
AAAAATATGGAATATGCATTTTAATCCTTATTTAACATTCTCAAGGTCTG
AATTGATGGTCATTATTatgtaattttaaaataaagatattccatttgcc
aaattaaaCAATCAACTGTTATAGAGCGCAGTGCTTTTGCAAGGTCGGCA
TTTTTTCATTGTGATTCCACCCCTTCTTAAATACCATTAAATTAGCTTTA
ATTATCTCTATAACTTTTACGCTTTTACAGTTTTTCTCACACTACACATA
CACGTGTTATAAACTTTTGCAAAACCATTATTTAATTACTTAAAAAATTA
CTTAGGTGAAATTAAATCTACAGGTCAACCAGTTGTCATTGTTAGCAGGA
CTAACAATCAAGCTGTTTTCATTCCCAAGACTCAAGCATCATCTCTTCCA
ACAAATCCAGTATTTCTTCCAATTACAATGGCAAATAATGTTTCTGTCCT
AACAAATCAAACTTCAGCCTTGATGGCTACAAAGAGAGGAGCTGGACAAN
GTTTCTGTCCTAACAAATCAAACTTCAGCCTTGATGGCTACAAAGAGAGG
AGCTGGACAACCTTCCATTCCTGTTCGCCTTCAACAGCAACAGGTAAATA
ccaaaattccattgttttttaccttttcaacCTTAAACAATGTGACAGTg
atgattgaaataaaaaaaattcaacaaaagtATTTCATTGAGGATAGTTG
CTTTATATGTCacaaatctttttaaatttagGTTGTTGCTGGTACAACTC
AACCTCCCGGAGCTAACGAAACTCATGTGAATTTAGCTACTTTAAATCTC
TTGAATCAAAATCAACAACAACCCAGAATTCTCATTCCATTAAATGCTAC
TGGCCTTCGTGGGATCCAGCAACCAAATCCACAATCTAGTCAACAAATAG
TCTTTCAATCTCTGTCACAGAAAGGATCTTTTGCACCATCACTTGGTAGT
TTGCAGCAAGTATGTGATTTTAGTTTTGTTCTGAGTTCCGGAATTCAGGG
AAGTTCTAGGCTAAAAACATCAGGAATTTAGATTTTGCTggcagaaatat
ttttttagcttagattgtttgctttttgatatttgattgaatgaatataa
ACAAAGCATctaatattttcataatttagaACAAGAAAGAAACTTTGGCA
AACATTGTTCCAGGACCTAAACCAGCTGCAAGTATTTCTGTTCCTTCCAC
TTCTACAAGGTAATTTATTGCTTTAAATTAATGTACAGCACCATCCTACA
AGTATTTTGTATATTTTCCATTTGGAGCTGGTATTCATATTTGCAAATTG
TTTCATTGCCTTCCTGTAAAATGTATGGgggtaataaaaagaaactaaTT
TGTTTCAATGATTGATATACAGCAGTATCCTCAACTCTGTTTGTACTACA
AAAGATGGTTGATGGTGCATCACTATAAATTCTATTAATACTATTAATAC
TATAAATAATAATATTACCTTGCATATTTTATAGCTCACTTGGAGAATCT
AAACCATTGAAGAAACCTTGTAACTGCACGAAGTCACAATGCTTGAAGCT
GTAAGTCAATTTCATCTAATTTGTTTAGTTCTCAAAATGAAGTTGCATAT
TTGAGGAATTTCagatatttttcctttttcatactaaagtctgtctcaaa
tgTCTGTGgacacttaATATAATAATATACTGGTCATTATAGGCCTACTT
CAAAGGgctgtaatttttttatatatagatgtccacatacttttgagaca
ggCTTTAGGCTTTTAGCAGGCTTTTCCTGTACAATATCTTCTCTTTTGAt
acgatttctcttttgcaatGAAAATTGGCAGGATAtagtgaagatcagag
atctgacctcaaggagggcaagtgttgaaaatactaaataaaataaagat
gaaacataaaaagggactaatatttttataattatacgtttttttgtatt
tttttgaatttttctttaaatatataaatcaaaccaatcaaacattctgt
caagaaatgagaattttaagcgaaaaagaaccaacaaaccaatagacata
aagtttaaaaagccaagcagaaacACAAACACACCAATCAcataaacaca
aacaccaaaaaccactGAACTGTTTTAGTTCTGTTGTTGTACGTACTTTA
GTTGGTGTCTTTtaactttcaaatcatttttttattttctctcaGCAAGT
ACCGTCGCTTGAAAGCAGGATTCCGCACTGGGTTCTAGGCCGACTTTTtg
tactttcttctttttctcattttgcTTTCTTTCATTTATTTCTCTAATCA
CTTCTGGATAGTGTCAGGCCAATACTACTCCTTTTCTTTCGGGAAGATGA
CGGGTGACTCACAGGTGGTAGGGGATGCTTACTCTAGGTACCGCACCTGA
TCTCAGACTTCGGTTTTCATCTTTTCAtactttttccattttctttcgGT
TTAGATCTCTTTTCATGTTAAATATTGGGTTCCTATTCgctaaatttgtt
ttaattGTTCTATTAATGTGTCTCTAGtaaaatttggtttgttttgtctt
ttagTATTTTGGGTTGTTAAAATTCATTGGTCATTTGACTGTTGTCGTAT
GATGTGGGAAAAGTTTTagtgttttctgaaatttgattagcttcttcaga
tataagggaaaaattgggagaaattttttttggatgacAGTCCATCGTGC
TACTTTGAgcgaaagttgattttttttgttttcctaaaaaattatTGTAA
ACTAACAAAAGAGGAGTTTGAAAGGGTTATTTTATCCTAGATATTTGATA
AATTACAGCTTAAACAAtacgaaatgaaaaaaaaattattagaagTTTAC
AGAAAATTTATTGTCCAAAGCTTTATTAGTTCAGGatctatttgattttt
tattccaaatattTTAAATCTCTTACACATAATAAACTTAACTTTATAAT
TTTTCCCATACTTTATCAGGTATTGTGAATGTTTTGCTAATGGTGAATTT
TGTAACAACTGTAACTGCCGCAGCTGCTTAAACAATATGCAACATGAAGC
AGAACGAAGTAGAGCTatcaaggtaaatacaaataaTTTTCTTGTTGTTG
ATTTGGTTATTCTTATGTACTGAACCTGTAATGATTATTTTACAAAAGGT
ACAGAAATTATATTTACCTGTATTTTATCGTTTTACTAGCTTTGTTTGGA
ACGCAACCAATACGCTTTTCATCCAAAAATTGGCAAAGGAAAAGTAAAAG
GGGATAATGAACGAAGACATACAAAAGGTATGCTGGAAGAATTGAGTGCT
TGTGAATTTCAAATATAGATTGATTACACTTACATGATAATATATTATTA
TCATAGttcgtataaaaaaccctgggcTGGAAGCCTattgttgtaacttt
ttgttaattactattataaaaatcgatttgctcagttttttatcacgtta
ccaaatCCTCCTCTTGGGATTAGTTCAAaagttaatcacatgatcaaaaa
gtgaggaAAACAAACTACCttaagagaactaattttggcgggcagcaaat
atcctaaaaaaatttaattttggcgggaacttattttagcgaatgacagc
gtaaatctgttctattttgccttattttgagcaaatttgatgaatttcag
gggttatttaggcaaggaaacaaaaaatttaattttggcgggaacttatt
tagTCGAgtaagcaaaatatttaattttggatttggcgggaactaatttc
ggcgaatttcgtctaaattcgccaaaattagttcccgccaaaataagttc
ccttaaggtaatttttcaacgcaagttcaagtttgaaaaaaaatagaaag
aaacaaaaggcttcccgACTGGGGCTACTTATACTGACTATGATATTATG
GATTCAGAAGTAAATTGATTATGAAACTCATttcattgatttgattattt
gaTTATATTCTGTGTTTCAGGTTGCAACTGTAAACGTTCTGGGTGCCTCA
AAAACTATTGTGAATGTTATGAGGTTAGTATTTTGGTCATAATCTTGTAT
CCGACTCAGTTTTCTATAGATATAAGTTAAAATCGATAGTAAGAAGGACT
GATATTGAAATACCATCGGTAACTTGGTTTTATTTGTTCACCAAGTATTT
CTGTTTCAATTGgtgatttttacttttcaaaGGCAAAAATACTTTGTTCT
GCACTGTGTCGCTGTGTTGGCTGCAAGAATTTCGAAGAATCTGATGATCG
CAAAACATTAATGCAACTTGCAGATGCTGCAGGTACTACTTTTTTTTACT
CACCATTTTGAAAGCGACTGGTCAAAGATTTTAAACAATTCTTTAGAATC
AACCATTTTAGGCTGTAACGGAAAGATGCTGTTGTGGTGTGTTTTGTAGA
CTTTCATTATTTTTCGGTTTgttctttcatttttagaagCAAGAGTATTA
CAACAAAATGCTGCTAAAACTAAATTAGCATCGCAATTAGAAGTTGCTCC
GAAAGTTTCCAAAAAGATTACTGCAAAGGATAAGTAAGTTCACACTCCCA
CTCCAGACacaatttgaataaaaaatttcacTCAAATATCGATCGAGCAG
GATCGAGACTTTTCTTTAAATTCCTATCTCTTGGAAATTTAATTCTTAGT
TTTGAATACAGTCTTTGcttctcttttcaaaattttaggaaTGCTGCAAC
TTTTATAACAACAGATGTATCTAAAGCAGCTTGTGATATTTTGATGGCTA
CTGCGATGGAAGCTGAAAAGGTAAAGATCAAAGTTCAAGTATTCAAATTG
TATTTTATGTGTTCAAATTCTTTGAATAAAGTGTAAATAGTTTATCGAAT
TTTTGGTGATCTATTTTTCAGAAGTCTTCCTGGTTTCCTACTGAATTATT
GATGAAAGTATGTATATACAGAAAGCAATGAATCTATTACTGTTCTCTTT
AGAATAATTTATCCCCAGAGGAAGCAGAACGAACCCTTATTGTAGAATTT
TCGAGATGTCTGGATCAAATTATTAACAAATCAAATACAGGTATGACATT
GCTGTTCCTTTTTGTCGCGTGTTCATATATTATTACCTTAGTCCCATTAA
GTTGTGCATAGCCAAAATTCGCCGATTTAAGTTCCAATGGGTCAACACAA
GAAGCTTGATTGGCTATAGGGACTATATGGACTTGGGACAGCTGTAATTA
ATGGGTGAGGTTGTTTAGCTCTTCAACAATTCTTCATCAATAATTTCCCT
TTGAAAATAAATGGTAATGAAAATAAATGGTACTcggaaatcttttgaaa
taattctttaAACTTGAATGTAGAACAAGTGCTCCCAAAGAGCCCAAAGA
TGATTATTTACATAAGTCATGCCGCAGAACTTAATCTCCCCTTATACTTT
CTATTTTTCAGGGAAAAGGTGACAATTGTTTTAAtagatcttttttttaa
tttttacttttGCAATACAAATTAGCTGAATATTAtaattgaaaagtttt
attatttatattttataaaatcaaCCCCATTTATATAAATAGAATGTATC
ATATTACCCTCCCTGCTGGTGTATATCTGTTTTACTTATACCATTTAtcg
aaaatcagagaaaatacTAATAATCTTGTGTGAAATTATTCTTAATTAGT
CAATCTTATTTGAAGTTTTTAAGTGAAGAAATAGAACTTGAGTTTAATTA
GCCCtcaattttgccacttttagTAGTTTTAGTAAGTTCCCTTTGAGGGA
GGTCACTCTAGCACTAGATTGTCTGTAGCAAAATTATGTTCAATAAGTTA
CCTTAACTACTTTAATTTGCTTTAAATAGGACGATTCTGAAAGTGGATTG
CTCTTAAATAGTTCTCATTTCTTGCCATTATTTTGAGCTTCATTGCTCTT
AAAAGAGAAACAGAGTTTTTGTTCATCGCTCCATGAAGCTGCTTTGTAGC
CACCAAGGTAATGGACAGCCTAGTATATTTATTTAAATCGAATCAGATCA
CCTACACGGTTTTTTTGTAATAGTCCaggaaaaaaatggcaaaaatccCA
CCTTGAGTACTTTTAGAGAAACTTTTGTAAAACATCGATGGTCAGCTttt
attgaaactttcaaataatttttttgaacatatttGCTTGCTTGATGTGT
GCAAAGTTTC

Coding sequence (CDS) from alignment at sc0000162:424820..432429+

>TCONS_00013128 ID=TCONS_00013128|Name=TCONS_00013128|organism=Clytia hemisphaerica|type=CDS|length=4428bp|location=Sequence derived from alignment at sc0000162:424820..432429+ (Clytia hemisphaerica)
ATGCAGAATACACAAGGTGTTAATAACACCGCCCATTTGAATACTGTATC
AACACACAAGATTATCAAAATTCAGTCCCCATCTGTTGCAGCAAGCCTCT
CAAATGCACAAAATGTGACGCTCAATAAGACTCAAGTCTTGAATTTATCA
CAAGGGGGACAACAGTTAATCACCGTTCAGCCAAGTGGATTGTCCTTTAT
TCCTATTCAAACTGGAAATGGAACACAACTTGTTCAAGTTCAAATGCCTA
ATGCACAACAAAGTGGTGCAAACTTTGTTCAGCTACAAACAAACCCTTCA
AATCCAGCATCAACAACAAGAGTGTTGAATACAAACCAAACTTTAATTCC
TGTTCAGAGAGTTTTAACTCAAGGACAGGCTGGAAATGCAAATCAAAAAG
TCTCAATTCAACTAGTACAAACAGCTGGTGGATTGCAGAAGACAGCATCT
TTAGTAGGAACACAGACTGCTGGAGAATCGACACAACATGAACTTACAAC
AAGGGCCACTAACCAGCCACAAGGCGCAACTGTATCTGTAAATACAAACC
CTGCAAGCTTATTATCTGCTACAAACACCACTTCAACCATTTTTTACGCT
TTACAACAGCAAGCAGGTTCCTTACCACAATCTTCAATCAACACTGTAAA
TACAAATGTACATACTCAAAGCATTATCACAAAGACACTTTCTTCAGTTC
GTTTACCCCAACCCAACATTGGGCAGCCAATCACAAAGACAAAGATTCCT
TCTGCTGCTTCTGGACTGCCAATCTCCTCTTCACCCGCCAAAAATATTCA
GGGTCAACCAGTTGTCATTGTTAGCAGGACTAACAATCAAGCTGTTTTCA
TTCCCAAGACTCAAGCATCATCTCTTCCAACAAATCCAGTATTTCTTCCA
ATTACAATGGCAAATAATGTTTCTGTCCTAACAAATCAAACTTCAGCCTT
GATGGCTACAAAGAGAGGAGCTGGACAANGTTTCTGTCCTAACAAATCAA
ACTTCAGCCTTGATGGCTACAAAGAGAGGAGCTGGACAACCTTCCATTCC
TGTTCGCCTTCAACAGCAACAGGTTGTTGCTGGTACAACTCAACCTCCCG
GAGCTAAATGCAGAATACACAAGGTGTTAATAACACCGCCCATTTGAATA
CTGTATCAACACACAAGATTATCAAAATTCAGTCCCCATCTGTTGCAGCA
AGCCTCTCAAATGCACAAAATGTGACGCTCAATAAGACTCAAGTCTTGAA
TTTATCACAAGGGGGACAACAGTTAATCACCGTTCAGCCAAGTGGATTGT
CCTTTATTCCTATTCAAACTGGAAATGGAACACAACTTGTTCAAGTTCAA
ATGCCTAATGCACAACAAAGTGGTGCAAACTTTGTTCAGCTACAAACAAA
CCCTTCAAATCCAGCATCAACAACAAGAGTGTTGAATACAAACCAAACTT
TAATTCCTGTTCAGAGAGTTTTAACTCAAGGACAGGCTGGAAATGCAAAT
CAAAAAGTCTCAATTCAACTAGTACAAACAGCTGGTGGATTGCAGAAGAC
AGCATCTTTAGTAGGAACACAGACTGCTGGAGAATCGACACAACATGAAC
TTACAACAAGGGCCACTAACCAGCCACAAGGCGCAACTGTATCTGTAAAT
ACAAACCCTGCAAGCTTATTATCTGCTACAAACACCACTTCAACCATTTT
TTACGCTTTACAACAGCAAGCAGGTTCCTTACCACAATCTTCAATCAACA
CTGTAAATACAAATGTACATACTCAAAGCATTATCACAAAGACACTTTCT
TCAGTTCGTTTACCCCAACCCAACATTGGGCAGCCAATCACAAAGACAAA
GATTCCTTCTGCTGCTTCTGGACTGCCAATCTCCTCTTCACCCGCCAAAA
ATATTCAGGGTCAACCAGTTGTCATTGTTAGCAGGACTAACAATCAAGCT
GTTTTCATTCCCAAGACTCAAGCATCATCTCTTCCAACAAATCCAGTATT
TCTTCCAATTACAATGGCAAATAATGTTTCTGTCCTAACAAATCAAACTT
CAGCCTTGATGGCTACAAAGAGAGGAGCTGGACAANGTTTCTGTCCTAAC
AAATCAAACTTCAGCCTTGATGGCTACAAAGAGAGGAGCTGGACAACCTT
CCATTCCTGTTCGCCTTCAACAGCAACAGGTTGTTGCTGGTACAACTCAA
CCTCCCGGAGCTAAATGCAGAATACACAAGGTGTTAATAACACCGCCCAT
TTGAATACTGTATCAACACACAAGATTATCAAAATTCAGTCCCCATCTGT
TGCAGCAAGCCTCTCAAATGCACAAAATGTGACGCTCAATAAGACTCAAG
TCTTGAATTTATCACAAGGGGGACAACAGTTAATCACCGTTCAGCCAAGT
GGATTGTCCTTTATTCCTATTCAAACTGGAAATGGAACACAACTTGTTCA
AGTTCAAATGCCTAATGCACAACAAAGTGGTGCAAACTTTGTTCAGCTAC
AAACAAACCCTTCAAATCCAGCATCAACAACAAGAGTGTTGAATACAAAC
CAAACTTTAATTCCTGTTCAGAGAGTTTTAACTCAAGGACAGGCTGGAAA
TGCAAATCAAAAAGTCTCAATTCAACTAGTACAAACAGCTGGTGGATTGC
AGAAGACAGCATCTTTAGTAGGAACACAGACTGCTGGAGAATCGACACAA
CATGAACTTACAACAAGGGCCACTAACCAGCCACAAGGCGCAACTGTATC
TGTAAATACAAACCCTGCAAGCTTATTATCTGCTACAAACACCACTTCAA
CCATTTTTTACGCTTTACAACAGCAAGCAGGTTCCTTACCACAATCTTCA
ATCAACACTGTAAATACAAATGTACATACTCAAAGCATTATCACAAAGAC
ACTTTCTTCAGTTCGTTTACCCCAACCCAACATTGGGCAGCCAATCACAA
AGACAAAGATTCCTTCTGCTGCTTCTGGACTGCCAATCTCCTCTTCACCC
GCCAAAAATATTCAGGGTCAACCAGTTGTCATTGTTAGCAGGACTAACAA
TCAAGCTGTTTTCATTCCCAAGACTCAAGCATCATCTCTTCCAACAAATC
CAGTATTTCTTCCAATTACAATGGCAAATAATGTTTCTGTCCTAACAAAT
CAAACTTCAGCCTTGATGGCTACAAAGAGAGGAGCTGGACAANGTTTCTG
TCCTAACAAATCAAACTTCAGCCTTGATGGCTACAAAGAGAGGAGCTGGA
CAACCTTCCATTCCTGTTCGCCTTCAACAGCAACAGGTTGTTGCTGGTAC
AACTCAACCTCCCGGAGCTAAATGCAGAATACACAAGGTGTTAATAACAC
CGCCCATTTGAATACTGTATCAACACACAAGATTATCAAAATTCAGTCCC
CATCTGTTGCAGCAAGCCTCTCAAATGCACAAAATGTGACGCTCAATAAG
ACTCAAGTCTTGAATTTATCACAAGGGGGACAACAGTTAATCACCGTTCA
GCCAAGTGGATTGTCCTTTATTCCTATTCAAACTGGAAATGGAACACAAC
TTGTTCAAGTTCAAATGCCTAATGCACAACAAAGTGGTGCAAACTTTGTT
CAGCTACAAACAAACCCTTCAAATCCAGCATCAACAACAAGAGTGTTGAA
TACAAACCAAACTTTAATTCCTGTTCAGAGAGTTTTAACTCAAGGACAGG
CTGGAAATGCAAATCAAAAAGTCTCAATTCAACTAGTACAAACAGCTGGT
GGATTGCAGAAGACAGCATCTTTAGTAGGAACACAGACTGCTGGAGAATC
GACACAACATGAACTTACAACAAGGGCCACTAACCAGCCACAAGGCGCAA
CTGTATCTGTAAATACAAACCCTGCAAGCTTATTATCTGCTACAAACACC
ACTTCAACCATTTTTTACGCTTTACAACAGCAAGCAGGTTCCTTACCACA
ATCTTCAATCAACACTGTAAATACAAATGTACATACTCAAAGCATTATCA
CAAAGACACTTTCTTCAGTTCGTTTACCCCAACCCAACATTGGGCAGCCA
ATCACAAAGACAAAGATTCCTTCTGCTGCTTCTGGACTGCCAATCTCCTC
TTCACCCGCCAAAAATATTCAGGGTCAACCAGTTGTCATTGTTAGCAGGA
CTAACAATCAAGCTGTTTTCATTCCCAAGACTCAAGCATCATCTCTTCCA
ACAAATCCAGTATTTCTTCCAATTACAATGGCAAATAATGTTTCTGTCCT
AACAAATCAAACTTCAGCCTTGATGGCTACAAAGAGAGGAGCTGGACAAN
GTTTCTGTCCTAACAAATCAAACTTCAGCCTTGATGGCTACAAAGAGAGG
AGCTGGACAACCTTCCATTCCTGTTCGCCTTCAACAGCAACAGGTTGTTG
CTGGTACAACTCAACCTCCCGGAGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007334XLOC_007334Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013128-exon-sc0000162-1491911889:424820..425822TCONS_00013128-exon-sc0000162-1491911889:424820..425822Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1510915933:424820..425822TCONS_00013128-exon-sc0000162-1510915933:424820..425822Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1575043694:424820..425822TCONS_00013128-exon-sc0000162-1575043694:424820..425822Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1491911889:425933..426118TCONS_00013128-exon-sc0000162-1491911889:425933..426118Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1510915933:425933..426118TCONS_00013128-exon-sc0000162-1510915933:425933..426118Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1575043694:425933..426118TCONS_00013128-exon-sc0000162-1575043694:425933..426118Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1491911889:426593..426862TCONS_00013128-exon-sc0000162-1491911889:426593..426862Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1510915933:426593..426862TCONS_00013128-exon-sc0000162-1510915933:426593..426862Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1575043694:426593..426862TCONS_00013128-exon-sc0000162-1575043694:426593..426862Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1491911889:427001..427228TCONS_00013128-exon-sc0000162-1491911889:427001..427228Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1510915933:427001..427228TCONS_00013128-exon-sc0000162-1510915933:427001..427228Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1575043694:427001..427228TCONS_00013128-exon-sc0000162-1575043694:427001..427228Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1491911889:427399..427478TCONS_00013128-exon-sc0000162-1491911889:427399..427478Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1510915933:427399..427478TCONS_00013128-exon-sc0000162-1510915933:427399..427478Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1575043694:427399..427478TCONS_00013128-exon-sc0000162-1575043694:427399..427478Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1491911889:427754..427819TCONS_00013128-exon-sc0000162-1491911889:427754..427819Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1510915933:427754..427819TCONS_00013128-exon-sc0000162-1510915933:427754..427819Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1575043694:427754..427819TCONS_00013128-exon-sc0000162-1575043694:427754..427819Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1491911889:429239..429341TCONS_00013128-exon-sc0000162-1491911889:429239..429341Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1510915933:429239..429341TCONS_00013128-exon-sc0000162-1510915933:429239..429341Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1575043694:429239..429341TCONS_00013128-exon-sc0000162-1575043694:429239..429341Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1491911889:429459..429546TCONS_00013128-exon-sc0000162-1491911889:429459..429546Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1510915933:429459..429546TCONS_00013128-exon-sc0000162-1510915933:429459..429546Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1575043694:429459..429546TCONS_00013128-exon-sc0000162-1575043694:429459..429546Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1491911889:430240..430292TCONS_00013128-exon-sc0000162-1491911889:430240..430292Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1510915933:430240..430292TCONS_00013128-exon-sc0000162-1510915933:430240..430292Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1575043694:430240..430292TCONS_00013128-exon-sc0000162-1575043694:430240..430292Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1491911889:430452..430551TCONS_00013128-exon-sc0000162-1491911889:430452..430551Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1510915933:430452..430551TCONS_00013128-exon-sc0000162-1510915933:430452..430551Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1575043694:430452..430551TCONS_00013128-exon-sc0000162-1575043694:430452..430551Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1491911889:430706..430802TCONS_00013128-exon-sc0000162-1491911889:430706..430802Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1510915933:430706..430802TCONS_00013128-exon-sc0000162-1510915933:430706..430802Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1575043694:430706..430802TCONS_00013128-exon-sc0000162-1575043694:430706..430802Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1491911889:430958..431039TCONS_00013128-exon-sc0000162-1491911889:430958..431039Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1510915933:430958..431039TCONS_00013128-exon-sc0000162-1510915933:430958..431039Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1575043694:430958..431039TCONS_00013128-exon-sc0000162-1575043694:430958..431039Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1491911889:431222..431309TCONS_00013128-exon-sc0000162-1491911889:431222..431309Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1510915933:431222..431309TCONS_00013128-exon-sc0000162-1510915933:431222..431309Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1575043694:431222..431309TCONS_00013128-exon-sc0000162-1575043694:431222..431309Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1491911889:431681..432429TCONS_00013128-exon-sc0000162-1491911889:431681..432429Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1510915933:431681..432429TCONS_00013128-exon-sc0000162-1510915933:431681..432429Clytia hemisphaericaexon
TCONS_00013128-exon-sc0000162-1575043694:431681..432429TCONS_00013128-exon-sc0000162-1575043694:431681..432429Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013128-proteinTCONS_00013128-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:424820..432429 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.6967	20.9271	7.71356	4.87296	36.4921	29.1659	17.9759	17.8448	9.70832	12.4845	8.69684	6.63547	5.0448	4.91882	6.15705	6.36837	10.6746	10.502	2.33814	3.25345	5.90857	6.59382	27.1005	23.0891	11.0162	12.4064	5.75483	4.68022	21.589	24.9537
Blast
[Close]
BLAST of TCONS_00013128 vs. Swiss-Prot (Human)
Match: LIN54 (Protein lin-54 homolog OS=Homo sapiens GN=LIN54 PE=1 SV=3)

HSP 1 Score: 263.462 bits (672), Expect = 1.449e-74
Identity = 137/227 (60.35%), Postives = 175/227 (77.09%), Query Frame = 2 
Query: 1781 SKPLKKPCNCTKSQCLKLYCECFANGEFXXXXXXXXXXXXMQHEAERSRAIKLCLERNQYAFHPKIGKGKVKGDNERRHTKGCNCKRSGCLKNYCECYEAKILCSALCRCVGCKNFEESDDRKTLMQLADAAEARVLQQNAAKTKLASQLEVAPKVSKKITAKDKNAA----TFITTDVSKAACDILMATAMEAEKNNLSPEEAERTLIVEFSRCLDQIINKSNTGK 2449
            S+P +KPCNCTKS CLKLYC+CFANGEFCNNCNC +C NN++HE ER +AIK CL+RN  AF PKIGKGK +G+++RRH+KGCNCKRSGCLKNYCECYEAKI+CS++C+C+GCKNFEES +RKTLM LADAAE RV QQ AAKTKL+SQ  ++  +++   A +        TF+T +V++A C+ L+A A +A+K   S   AER ++ EF RCL  +IN +   K
Sbjct:  519 SRP-RKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGK-EGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESPERKTLMHLADAAEVRVQQQTAAKTKLSSQ--ISDLLTRPTPALNSGGGKLPFTFVTKEVAEATCNCLLAQAEQADKKGKSKAAAERMILEEFGRCLMSVINSAGKAK 741
The following BLAST results are available for this feature:
BLAST of TCONS_00013128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LIN541.449e-7460.35Protein lin-54 homolog OS=Homo sapiens GN=LIN54 PE... [more]
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