TCONS_00013132 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013132
Unique NameTCONS_00013132
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013132 ID=TCONS_00013132|Name=TCONS_00013132|organism=Clytia hemisphaerica|type=transcript|length=474bp
aataaagtACAAAAAATAGATTAGAAAAGAAGAATGGACATAAAACCTAG
AGGGGAAGAAATTTATGTAGCATAATGGCGCTAGATCCAAGTGGATTGAA
TTTCAACAGCTTGAAAGAAATCAATAACTATGTTGATAAagtgaaaataa
acaaattaaacTTGAATACACAACTCCAAATTAAACAGTACTGCAAGTCA
GCATGTGACCTCTTCCAAAAGGCTGATGGGCTTTGGAAAGCTAAAGATGA
TGAAAATGCCTACATTTTATACATGAGATGTTTCAACATATACCAAGCAA
TAAGCAAATCGtatgaattttccaaaaataagACTGTATTCAAACCTTTG
TTGAAAGATATCAACCCTAATGAATGTGTGGTCAAAGCTGAAAAACTAAA
TCAAATCCTACAGGCTAGgtatgagaagaaaaagaaagatttggaaagaC
TAAGGTACCTTTTTAATACTCAAC
Run BLAST on NCBI

protein sequence of TCONS_00013132-protein

>TCONS_00013132-protein ID=TCONS_00013132-protein|Name=TCONS_00013132-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MALDPSGLNFNSLKEINNYVDKVKINKLNLNTQLQIKQYCKSACDLFQKA
DGLWKAKDDENAYILYMRCFNIYQAISKSYEFSKNKTVFKPLLKDINPNE
CVVKAEKLNQILQARYEKKKKDLERLRYLFNTQ
Run BLAST on NCBI

transcript from alignment at sc0000162:11794..14084-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013132 ID=TCONS_00013132|Name=TCONS_00013132|organism=Clytia hemisphaerica|type=transcript|length=2291bp|location=Sequence derived from alignment at sc0000162:11794..14084- (Clytia hemisphaerica)
AATAAAGTACAAAAAATAGATTAGAAAAGAAGAATGGACATAAAACCTAG
AGGGGAAGAAATTTATGTAGCATAATGGCGCTAGATCCAAGTGGATTGAA
TTTCAACAGCTTGAAAGAAATCAATAACTATGTTGATAAAGTGAAAATAA
ACAAATTAAACTTGAATACACAACTCCAAATTAAACAGTAAGTTGATAAT
ACAATACTTTTCTTTTTACACCAGAACAATGAATGTGCAAATGGCAAGAA
AATGTCTATTCCGTAAATTAAATACATGGAAATTTTTTGGAAATACTTAC
TCAAGATTTAAATCTAGAAATCTTGCTGCTTTTGCTTTTTAAAATTTAAT
CGAGTTAAAGTATTTTTTTAAGATTTATTTTTGTTTCTCTAAGTAATAAT
GAATGATGGCTCTTTTAGGTACTGCAAGTCAGCATGTGACCTCTTCCAAA
AGGCTGATGGGCTTTGGAAAGCTAAAGATGATGAAAATGCCTACATTTTA
TACATGAGATGTTTCAACATATACCAAGCAATAAGCAAATCGTATGAATT
TTCCAAAAATAAGGTATAATTTTATTTAGTTTTACTTAAAAAGCCTAATT
ATAAGTCAATAATAATTGCAATTTTGTTGTCCAACTACTGAGTTTTTGTT
TCAATATCATCATTTTTTGTAACATGATTTAGGATTATAAAAACAAAATT
TAGACATCAATTGGACAGAATTTCTATCTAAAATGTCATATTTCTTTACA
CGTTTGAGTGCATAATTTGTTGTAGTATACTTTTTTAATTCAGACATGGT
CTTTTTGTTCTATTAGGATACCAGAAATTTTGAAATTAGAAATCGGATTC
TGAAATTCTATAACTTTAATCTTCATAAATTTATAATTTATAAAGAGTAT
AATCTGTATAAGTTTGCATAAATTTATAAATATTACAGTTACAGAATTTT
AGAATCCGCGCCATACCCATAGCCAAAAACAAATTCTTCAAGCTTAAAAC
TTCTCAGAAAGATGTAGCCTTACATTTTTATCTTTAAATTTGATGATCTT
TTCTATCCAGACTGTATTCAAACCTTTGTTGAAAGATATCAACCCTAATG
AATGTGTGGTCAAAGCTGAAAAACTAAATCAAATCCTACAGGCTAGGTAA
AAACGTTTTTATTATGATTTTTATAAAGCTGCAAAACGTTAGTGTTTATA
TACTGGGGTGGTCCAAAAAAAACTTCCAATGTTTGGCAACGCCTTTGAGC
AGAATGGATCAAGATATGACAAAACTTGAATTTAATTGTAAGAAAGGGGA
AAGTCTGGCAATCTAAAATTTCAGCTGTTAGTGTTACTTTTTTGAATTCG
GTTCTGTATTTTTTGAGTAATCGGTTTTCAAAATAAAATTTCAGTTACTT
TTAAAAATGATTGAAATGGTAAAAAAATGGGTGATTAAATTAATAACGAG
AAGAGATGGAATAGACATGGCTTAATAATGATATTGTACCGGCACAATTT
CACAAGGTTATATAAACAAAAACTTATTCGTTGGGAAAAGCATTTAGTAA
CTCTACCAAACTCACTCTCTCTTTTCTGGTTCTAAGTATGGCGAAGCACT
GTGATGAGGAGATTTTTACAGACTTGACTCTATCCAATAATGTCTAATTT
CTTTTCAATAAGGTTTTACCAGATGAAAATATTCATATTCAATTTTACAG
AATAGAATAGTTAATTACATCAGAAAAATGCGTGTCTGTTCAATTGAAAC
GAAAGAAACGAAAGAAAGAGAAAACAAACCGAATCAAATTTTAATCACCC
ATTTTTGACGTATTTTTTGCACTTTTTGAAAAGTGCTAGTTGAACCAATT
GTCCAAATGTAAAAATTTATAAATCAAAATTTAAGTTAGACCTTCCCAAA
TTTTAATGAAGCAAGGTCGACCTTACAGATCACACATATCTATAAACGTA
ACCAAACATCTGCAGTTTTTTTTGGACGACCCGGTATTGAGATGGTATTG
AGTTTCATTTGCTTTAAGTTTTCAATCTTTTTTGCTACCAAGTTGAAACA
CTGTCAAGGGAAGTTTCTTCTAATTGGTCGACGTGGTTACTGCATGATAG
TGAAAAGAATGCACAATTTAAAGCAAACGGCCTTCAGACTTACTATTAGA
ATTTCATTAAGGTCTTCTTTTAAAGAGCATCAGAATAAAGGATAAATAAT
GACGTAAACTTATTATGATGAAATATTTTGTTTAGGTATGAGAAGAAAAA
GAAAGATTTGGAAAGACTAAGGTACCTTTTTAATACTCAAC

Coding sequence (CDS) from alignment at sc0000162:11794..14084-

>TCONS_00013132 ID=TCONS_00013132|Name=TCONS_00013132|organism=Clytia hemisphaerica|type=CDS|length=1596bp|location=Sequence derived from alignment at sc0000162:11794..14084- (Clytia hemisphaerica)
GTATGAGAAGAAAAAGAAAGATTTGGAAAGACTAAGGTACCTTTTTAATA
CTCAAACTGTATTCAAACCTTTGTTGAAAGATATCAACCCTAATGAATGT
GTGGTCAAAGCTGAAAAACTAAATCAAATCCTACAGGCTAGGTACTGCAA
GTCAGCATGTGACCTCTTCCAAAAGGCTGATGGGCTTTGGAAAGCTAAAG
ATGATGAAAATGCCTACATTTTATACATGAGATGTTTCAACATATACCAA
GCAATAAGCAAATCGTATGAATTTTCCAAAAATAAGATGGCGCTAGATCC
AAGTGGATTGAATTTCAACAGCTTGAAAGAAATCAATAACTATGTTGATA
AAGTGAAAATAAACAAATTAAACTTGAATACACAACTCCAAATTAAACAG
TATGAGAAGAAAAAGAAAGATTTGGAAAGACTAAGGTACCTTTTTAATAC
TCAAACTGTATTCAAACCTTTGTTGAAAGATATCAACCCTAATGAATGTG
TGGTCAAAGCTGAAAAACTAAATCAAATCCTACAGGCTAGGTACTGCAAG
TCAGCATGTGACCTCTTCCAAAAGGCTGATGGGCTTTGGAAAGCTAAAGA
TGATGAAAATGCCTACATTTTATACATGAGATGTTTCAACATATACCAAG
CAATAAGCAAATCGTATGAATTTTCCAAAAATAAGATGGCGCTAGATCCA
AGTGGATTGAATTTCAACAGCTTGAAAGAAATCAATAACTATGTTGATAA
AGTGAAAATAAACAAATTAAACTTGAATACACAACTCCAAATTAAACAGT
ATGAGAAGAAAAAGAAAGATTTGGAAAGACTAAGGTACCTTTTTAATACT
CAAACTGTATTCAAACCTTTGTTGAAAGATATCAACCCTAATGAATGTGT
GGTCAAAGCTGAAAAACTAAATCAAATCCTACAGGCTAGGTACTGCAAGT
CAGCATGTGACCTCTTCCAAAAGGCTGATGGGCTTTGGAAAGCTAAAGAT
GATGAAAATGCCTACATTTTATACATGAGATGTTTCAACATATACCAAGC
AATAAGCAAATCGTATGAATTTTCCAAAAATAAGATGGCGCTAGATCCAA
GTGGATTGAATTTCAACAGCTTGAAAGAAATCAATAACTATGTTGATAAA
GTGAAAATAAACAAATTAAACTTGAATACACAACTCCAAATTAAACAGTA
TGAGAAGAAAAAGAAAGATTTGGAAAGACTAAGGTACCTTTTTAATACTC
AAACTGTATTCAAACCTTTGTTGAAAGATATCAACCCTAATGAATGTGTG
GTCAAAGCTGAAAAACTAAATCAAATCCTACAGGCTAGGTACTGCAAGTC
AGCATGTGACCTCTTCCAAAAGGCTGATGGGCTTTGGAAAGCTAAAGATG
ATGAAAATGCCTACATTTTATACATGAGATGTTTCAACATATACCAAGCA
ATAAGCAAATCGTATGAATTTTCCAAAAATAAGATGGCGCTAGATCCAAG
TGGATTGAATTTCAACAGCTTGAAAGAAATCAATAACTATGTTGATAAAG
TGAAAATAAACAAATTAAACTTGAATACACAACTCCAAATTAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007337XLOC_007337Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013132-exon-sc0000162-1575043694:13898..14084TCONS_00013132-exon-sc0000162-1575043694:13898..14084Clytia hemisphaericaexon
TCONS_00013132-exon-sc0000162-1575043694:13522..13666TCONS_00013132-exon-sc0000162-1575043694:13522..13666Clytia hemisphaericaexon
TCONS_00013132-exon-sc0000162-1575043694:12939..13024TCONS_00013132-exon-sc0000162-1575043694:12939..13024Clytia hemisphaericaexon
TCONS_00013132-exon-sc0000162-1575043694:11794..11849TCONS_00013132-exon-sc0000162-1575043694:11794..11849Clytia hemisphaericaexon
TCONS_00013132-exon-sc0000162-1510915933:13898..14084TCONS_00013132-exon-sc0000162-1510915933:13898..14084Clytia hemisphaericaexon
TCONS_00013132-exon-sc0000162-1510915933:13522..13666TCONS_00013132-exon-sc0000162-1510915933:13522..13666Clytia hemisphaericaexon
TCONS_00013132-exon-sc0000162-1510915933:12939..13024TCONS_00013132-exon-sc0000162-1510915933:12939..13024Clytia hemisphaericaexon
TCONS_00013132-exon-sc0000162-1510915933:11794..11849TCONS_00013132-exon-sc0000162-1510915933:11794..11849Clytia hemisphaericaexon
TCONS_00013132-exon-sc0000162-1491911889:13898..14084TCONS_00013132-exon-sc0000162-1491911889:13898..14084Clytia hemisphaericaexon
TCONS_00013132-exon-sc0000162-1491911889:13522..13666TCONS_00013132-exon-sc0000162-1491911889:13522..13666Clytia hemisphaericaexon
TCONS_00013132-exon-sc0000162-1491911889:12939..13024TCONS_00013132-exon-sc0000162-1491911889:12939..13024Clytia hemisphaericaexon
TCONS_00013132-exon-sc0000162-1491911889:11794..11849TCONS_00013132-exon-sc0000162-1491911889:11794..11849Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013132-proteinTCONS_00013132-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:11794..14084 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.2565	37.2074	30.3168	23.2833	20.0402	15.5507	15.6631	16.5972	9.02533	17.7472	16.6833	11.1453	16.9173	17.1064	10.7189	15.2558	15.5778	16.0698	15.3701	21.1471	16.439	18.3728	11.9732	13.816	14.5177	18.8577	18.7245	17.8282	19.7631	16.9562
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015063USP8_dimer
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013132 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top