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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013137 ID=TCONS_00013137|Name=TCONS_00013137|organism=Clytia hemisphaerica|type=transcript|length=2346bp
tgtactcgcaactgtctgtTAACTATCACATATTGCTCGGTGGAGTTTAA
TGCATCGCGTGCCTAAGAGAAATATCTTAGTCATGGTTGCTTCTTTACCG
TGTTGGAATGCGCATCTGAGAGGAGCTTAACATTACAATATGTTTATAAT
TAGggaagtcattaaaataaaaataacatacTGTGACATTATTAGTTAAA
GAAATAATGAGAGATGATTTTGCAGTGTCACTATCCGACCATGCATCCGT
TACCTTGGTAACGAATTAGAGGGCTGTTCAAAAGAGGAATGGCACTAATA
TCATCCgagttttgttttaaaaagggGTGAAGAGAGAAATAGCTTCTTCA
TTCTTGTTAAAGAAAGGTTGTAGATCACAACTTCAAACTGAGTTTTGTGA
ATTATTCACGGAGTGAAATATATCGACGGGTGATTTCACGATTGATTCAT
TTAATATTGAGTTGATCACACAAggaatttcttgaattttgagAGAAGAA
gatcgttttttattttaagacgCGATGAAGCTGACTTTGTTGTTCTTGTT
CGTATTCATAGCTTCGGCTTTTGCTGAAACGACAAAAGCAGTCCCTGAGC
CTGAAGGTTCAAAAGCTGAACCATCTGCTGAACCAACAGCAGAGCCAGAA
AAATCCAATCCTGAACCAGAAAAATCCAATCCTGAGCCAGAAAAATCCAC
CGCTGAGCCCGAGACAAAACCAGAGCCAGAGGGAACTGGAAAGTCTTACC
CTGAGCCAGAAAAATCGACCGCTGAGCCCGAGACAAAACCTGAGCCAGAG
GGAGCTGGAAAGTCTTACCCTGAGCCAGAAAAATCGACCGCAGAGCCAGA
GACAAAACCAGAGCCAGAGGGTACCGGAAAGTCTTATCCAGAACCGGAGA
AATCCACCGCTGAACCCGGTGTTGATTCCGGGATTGGAGCCAACGGAAAT
ACACAAACAGGAACAGCTGAACCAGAGAAGACCAGTAAGCCAGAGACAGA
ACCGGAACATTCAACATCAGAGCCAGAAAAAGGAACCGGAAAATCAGAAC
CAGAAGTAGGTGCAGGTGCTGGATCGAAACCTGAATCTGAGGGAGTTTCT
TCCGAACCTGAAGTGGAACCTGAAGTTGTGTATGGGATTCTTGGAGCACT
TCTCGGCGTCTTCATCATCGTATCTATCATGTTCTTTATGTTGTGGAGAC
AAGCCAAAAGTGCACTCATTGCCACCGACAAACCTACCATGAAAATGCCT
TGAGCAAACCGACTCTTCCTCAGATAAAACAGgGTCAATATATGGTCATC
CAAATACATATACACACGTCCAACACCAAATCAACCCTCAAGATAtagta
caaaaatatttttaaaaaactttctatttcaaaatgacccctatataaat
tatttttttactggAAGCGAATCCTGGTTGGTTTAATGACTCGTGATTTC
CCCGTAAAAATCATATAAAATATACAATAAACAATGCattcaaaatatat
atatatgacATTTCATTTGTAAATAATTTATAAATAGTATTTTAGTATGT
AGgtttaaaggaaaaaattcaaaaatatacatTCGTTCGTTCATCAAAAA
TCTAATtggttttaaattcttttaaaatttgcgCCGTTTTGTTAGATTAC
ACCCCATAATTGACAAAGAGCGTCAAAATGACATAGATCAACTGAGCTCA
GCTGAGGTAGTCTTTGTAAGGATCAGTACAGGGGGAGGAGGCATGATTGA
TAAGTTACAGGGAACTATATTGACACAGTCTGATGTCTCGTTAGTACATT
TTCTTTTTGCTCTTTGATGCTTGGTCAACAAATTACCATAACAAAGCCTT
GATTAAATTCATGCACTAATCGAGATAAATACTTGCAATAAAACCCGACA
TTTATCTATAATGAAGAATAAATAGAATGCATTTACGAATTACAAAAACA
ACTCTAGGTGGCCAATTAAAACGCAATCTCCTACCCTAATTACTTTAATT
TCCGCTCTTAACAAGCTACAAGATTGAAAGTCGAGATATCTACCCAATGT
TCAGGAATGAATGTTGAAACGACATTCATAATACGTGAAAATTGGCGTTA
CATAACTCAACCAAAGGATGAGTTAAGATAAAGGAAGTAATGTTTCAGAA
ATGTTCTCGTATCTCGATTTCCATGGGAAacaatttgtttgtttgtattt
ttgttGGACTGAGTAACTTGTAGAGGAAATCCAAGAGAAAGAATGATCCA
TTTATTAAGTTCTTTTAGTTTCATCCATTCTATATTTCGACATTTTCTTA
TCAAGTACCTCAACGAGCACCAAACATCTTTTGGACAGCAGCTCCC Run BLAST on NCBI protein sequence of TCONS_00013137-protein >TCONS_00013137-protein ID=TCONS_00013137-protein|Name=TCONS_00013137-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MKLTLLFLFVFIASAFAETTKAVPEPEGSKAEPSAEPTAEPEKSNPEPEK
SNPEPEKSTAEPETKPEPEGTGKSYPEPEKSTAEPETKPEPEGAGKSYPE
PEKSTAEPETKPEPEGTGKSYPEPEKSTAEPGVDSGIGANGNTQTGTAEP
EKTSKPETEPEHSTSEPEKGTGKSEPEVGAGAGSKPESEGVSSEPEVEPE
VVYGILGALLGVFIIVSIMFFMLWRQAKSALIATDKPTMKMP Run BLAST on NCBI transcript from alignment at sc0000162:107960..111196- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013137 ID=TCONS_00013137|Name=TCONS_00013137|organism=Clytia hemisphaerica|type=transcript|length=3237bp|location=Sequence derived from alignment at sc0000162:107960..111196- (Clytia hemisphaerica)
TGTACTCGCAACTGTCTGTTAACTATCACATATTGCTCGGTGGAGTTTAA
TGCATCGCGTGCCTAAGAGAAATATCTTAGTCATGGTTGCTTCTTTACCG
TGTTGGAATGCGCATCTGAGAGGAGCTTAACATTACAATATGTTTATAAT
TAGGGAAGTCATTAAAATAAAAATAACATACTGTGACATTATTAGTTAAA
GAAATAATGAGAGATGATTTTGCAGTGTCACTATCCGACCATGCATCCGT
TACCTTGGTAACGAATTAGAGGGCTGTTCAAAAGAGGAATGGCACTAATA
TCATCCGAGTTTTGTTTTAAAAAGGGGTGAAGAGAGAAATAGCTTCTTCA
TTCTTGTTAAAGAAAGGTTGTAGATCACAACTTCAAACTGAGTTTTGTGA
ATTATTCACGGAGTGAAATATATCGACGGGTGATTTCACGATTGATTCAT
TTAATATTGAGTTGATCACACAAGGAATTTCTTGAATTTTGAGAGAAGAA
GATCGTTTTTTATTTTAAGACGCGATGAAGCTGACTTTGTTGTTCTTGTT
CGTATTCATAGCTTCGGCTTTTGGTAAGGACATTTTGTTGATAAATCGTT
TACTTTTTGACTTTATTTTAGATGTAAATGAATGCGTATGTATAAATTTT
GACGTGTATATTTTTCAACATTCTAGCTGAAACGACAAAAGCAGTCCCTG
AGCCTGAAGGTTCAAAAGCTGAACCATCTGCTGAACCAACAGCAGAGCCA
GAAAAATCCAATCCTGAACCAGAAAAATCCAATCCTGAGCCAGAAAAATC
CACCGCTGAGCCCGAGACAAAACCAGAGCCAGAGGGAACTGGAAAGTCTT
ACCCTGAGCCAGAAAAATCGACCGCTGAGCCCGAGACAAAACCTGAGCCA
GAGGGAGCTGGAAAGTCTTACCCTGAGCCAGAAAAATCGACCGCAGAGCC
AGAGACAAAACCAGAGCCAGAGGGTACCGGAAAGTCTTATCCAGAACCGG
AGAAATCCACCGCTGAACCCGGTGTTGATTCCGGGATTGGAGCCAACGGA
AATACACAAACAGGAACAGCTGAACCAGAGAAGACCAGTAAGCCAGAGAC
AGAACCGGAACATTCAACATCAGAGCCAGAAAAAGGAACCGGAAAATCAG
AACCAGAAGTAGGTGCAGGTGCTGGATCGAAACCTGAATCTGAGGGAGTT
TCTTCCGAACCTGAAGTGGGTAAGTTGAAGTTTCTTCTTTTTTCAAAAGT
TGTGAAACGAAAATTTTCACCAAGAACAAAAAACCATGGAGCTAGGTAAC
ACTTTTTTAATTTACAGAAAAGCTTTTAAAATTACTCTCAACCCAATATG
CTTCTCAAAAAGTTGGATAATTGTCAAAGAATGTACTATGACTCTGCCAA
ATCTAAATTTACCAATTTATCCTTTCTTCTACAGAACCTGAAGTTGTGTA
TGGGATTCTTGGAGCACTTCTCGGCGTCTTCATCATCGTATCTATCATGT
TCTTTATGTTGTGGAGACAAGCCAAAAGTGCACTCATTGCCACCGACAAA
CCTACCATGAAAATGCCTTGAGCAAACCGACTCTTCCTCAGATAAAACAG
GTACAGACACGATTGTGTTTTATCGTTACACGAAAGATTACTCTGATTCA
GACACACTCCATTGTCTTGTTATAGAAAATAGAAATAATAACACATTTCT
AAAAACAATTTCTAAGCATCATATAAAAGTAGTGTGGAATAGGTTGTCAA
TGAAATATAGCACAGTTAGTTCACAAGTGAAAGGCACTGAGGAAGATTTC
ATTATTATGCTTCAAAATTAGAATACAGGTGTCAATTCCTTCGATATGAA
GTGACGCCAAACGATTTGACATCTATTTTGAAAAGGATGATTTCATGAAC
AGCTAGTCTCTTTCCAAATAAGTCTAAAAAACTTTAAAGGTTACCTAACA
ATCCCAATTAGGTTAATTTTTGCGCGGTTTCTTCTTGTTTCCATTTTTGC
ATGTAATGCGTTACATAATCTGGAAGTAAAAAACGTGTAATTATAGATAA
AGAGATGCCGGAAATAATACCTTACCTAAACAATACACAGGAAAATAATT
AGAGAAAAAGAATGAGAAACAATGAAATTCTTCTTTAATAATTCATATTC
AATTATTTTGTTTCATTTTTTAGGGTCAATATATGGTCATCCAAATACAT
ATACACACGTCCAACACCAAATCAACCCTCAAGATATAGTACAAAAATAT
TTTTAAAAAACTTTCTATTTCAAAATGACCCCTATATAAATTATTTTTTT
ACTGGAAGCGAATCCTGGTTGGTTTAATGACTCGTGATTTCCCCGTAAAA
ATCATATAAAATATACAATAAACAATGCATTCAAAATATATATATATGAC
ATTTCATTTGTAAATAATTTATAAATAGTATTTTAGTATGTAGGTTTAAA
GGAAAAAATTCAAAAATATACATTCGTTCGTTCATCAAAAATCTAATTGG
TTTTAAATTCTTTTAAAATTTGCGCCGTTTTGTTAGATTACACCCCATAA
TTGACAAAGAGCGTCAAAATGACATAGATCAACTGAGCTCAGCTGAGGTA
GTCTTTGTAAGGATCAGTACAGGGGGAGGAGGCATGATTGATAAGTTACA
GGGAACTATATTGACACAGTCTGATGTCTCGTTAGTACATTTTCTTTTTG
CTCTTTGATGCTTGGTCAACAAATTACCATAACAAAGCCTTGATTAAATT
CATGCACTAATCGAGATAAATACTTGCAATAAAACCCGACATTTATCTAT
AATGAAGAATAAATAGAATGCATTTACGAATTACAAAAACAACTCTAGGT
GGCCAATTAAAACGCAATCTCCTACCCTAATTACTTTAATTTCCGCTCTT
AACAAGCTACAAGATTGAAAGTCGAGATATCTACCCAATGTTCAGGAATG
AATGTTGAAACGACATTCATAATACGTGAAAATTGGCGTTACATAACTCA
ACCAAAGGATGAGTTAAGATAAAGGAAGTAATGTTTCAGAAATGTTCTCG
TATCTCGATTTCCATGGGAAACAATTTGTTTGTTTGTATTTTTGTTGGAC
TGAGTAACTTGTAGAGGAAATCCAAGAGAAAGAATGATCCATTTATTAAG
TTCTTTTAGTTTCATCCATTCTATATTTCGACATTTTCTTATCAAGTACC
TCAACGAGCACCAAACATCTTTTGGACAGCAGCTCCC Coding sequence (CDS) from alignment at sc0000162:107960..111196- >TCONS_00013137 ID=TCONS_00013137|Name=TCONS_00013137|organism=Clytia hemisphaerica|type=CDS|length=2187bp|location=Sequence derived from alignment at sc0000162:107960..111196- (Clytia hemisphaerica)
AACCTGAAGTTGTGTATGGGATTCTTGGAGCACTTCTCGGCGTCTTCATC
ATCGTATCTATCATGTTCTTTATGTTGTGGAGACAAGCCAAAAGTGCACT
CATTGCCACCGACAAACCTACCATGAAAATGCCTTGACTGAAACGACAAA
AGCAGTCCCTGAGCCTGAAGGTTCAAAAGCTGAACCATCTGCTGAACCAA
CAGCAGAGCCAGAAAAATCCAATCCTGAACCAGAAAAATCCAATCCTGAG
CCAGAAAAATCCACCGCTGAGCCCGAGACAAAACCAGAGCCAGAGGGAAC
TGGAAAGTCTTACCCTGAGCCAGAAAAATCGACCGCTGAGCCCGAGACAA
AACCTGAGCCAGAGGGAGCTGGAAAGTCTTACCCTGAGCCAGAAAAATCG
ACCGCAGAGCCAGAGACAAAACCAGAGCCAGAGGGTACCGGAAAGTCTTA
TCCAGAACCGGAGAAATCCACCGCTGAACCCGGTGTTGATTCCGGGATTG
GAGCCAACGGAAATACACAAACAGGAACAGCTGAACCAGAGAAGACCAGT
AAGCCAGAGACAGAACCGGAACATTCAACATCAGAGCCAGAAAAAGGAAC
CGGAAAATCAGAACCAGAAGTAGGTGCAGGTGCTGGATCGAAACCTGAAT
CTGAGGGAGTTTCTTCCGAACCTGAAGTGGATGAAGCTGACTTTGTTGTT
CTTGTTCGTATTCATAGCTTCGGCTTTTGAACCTGAAGTTGTGTATGGGA
TTCTTGGAGCACTTCTCGGCGTCTTCATCATCGTATCTATCATGTTCTTT
ATGTTGTGGAGACAAGCCAAAAGTGCACTCATTGCCACCGACAAACCTAC
CATGAAAATGCCTTGACTGAAACGACAAAAGCAGTCCCTGAGCCTGAAGG
TTCAAAAGCTGAACCATCTGCTGAACCAACAGCAGAGCCAGAAAAATCCA
ATCCTGAACCAGAAAAATCCAATCCTGAGCCAGAAAAATCCACCGCTGAG
CCCGAGACAAAACCAGAGCCAGAGGGAACTGGAAAGTCTTACCCTGAGCC
AGAAAAATCGACCGCTGAGCCCGAGACAAAACCTGAGCCAGAGGGAGCTG
GAAAGTCTTACCCTGAGCCAGAAAAATCGACCGCAGAGCCAGAGACAAAA
CCAGAGCCAGAGGGTACCGGAAAGTCTTATCCAGAACCGGAGAAATCCAC
CGCTGAACCCGGTGTTGATTCCGGGATTGGAGCCAACGGAAATACACAAA
CAGGAACAGCTGAACCAGAGAAGACCAGTAAGCCAGAGACAGAACCGGAA
CATTCAACATCAGAGCCAGAAAAAGGAACCGGAAAATCAGAACCAGAAGT
AGGTGCAGGTGCTGGATCGAAACCTGAATCTGAGGGAGTTTCTTCCGAAC
CTGAAGTGGATGAAGCTGACTTTGTTGTTCTTGTTCGTATTCATAGCTTC
GGCTTTTGAACCTGAAGTTGTGTATGGGATTCTTGGAGCACTTCTCGGCG
TCTTCATCATCGTATCTATCATGTTCTTTATGTTGTGGAGACAAGCCAAA
AGTGCACTCATTGCCACCGACAAACCTACCATGAAAATGCCTTGACTGAA
ACGACAAAAGCAGTCCCTGAGCCTGAAGGTTCAAAAGCTGAACCATCTGC
TGAACCAACAGCAGAGCCAGAAAAATCCAATCCTGAACCAGAAAAATCCA
ATCCTGAGCCAGAAAAATCCACCGCTGAGCCCGAGACAAAACCAGAGCCA
GAGGGAACTGGAAAGTCTTACCCTGAGCCAGAAAAATCGACCGCTGAGCC
CGAGACAAAACCTGAGCCAGAGGGAGCTGGAAAGTCTTACCCTGAGCCAG
AAAAATCGACCGCAGAGCCAGAGACAAAACCAGAGCCAGAGGGTACCGGA
AAGTCTTATCCAGAACCGGAGAAATCCACCGCTGAACCCGGTGTTGATTC
CGGGATTGGAGCCAACGGAAATACACAAACAGGAACAGCTGAACCAGAGA
AGACCAGTAAGCCAGAGACAGAACCGGAACATTCAACATCAGAGCCAGAA
AAAGGAACCGGAAAATCAGAACCAGAAGTAGGTGCAGGTGCTGGATCGAA
ACCTGAATCTGAGGGAGTTTCTTCCGAACCTGAAGTGGATGAAGCTGACT
TTGTTGTTCTTGTTCGTATTCATAGCTTCGGCTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00013137-exon-sc0000162-1575043694:110624..111196 | TCONS_00013137-exon-sc0000162-1575043694:110624..111196 | Clytia hemisphaerica | exon |
| TCONS_00013137-exon-sc0000162-1575043694:109978..110520 | TCONS_00013137-exon-sc0000162-1575043694:109978..110520 | Clytia hemisphaerica | exon |
| TCONS_00013137-exon-sc0000162-1575043694:109597..109762 | TCONS_00013137-exon-sc0000162-1575043694:109597..109762 | Clytia hemisphaerica | exon |
| TCONS_00013137-exon-sc0000162-1575043694:107960..109023 | TCONS_00013137-exon-sc0000162-1575043694:107960..109023 | Clytia hemisphaerica | exon |
| TCONS_00013137-exon-sc0000162-1510915933:110624..111196 | TCONS_00013137-exon-sc0000162-1510915933:110624..111196 | Clytia hemisphaerica | exon |
| TCONS_00013137-exon-sc0000162-1510915933:109978..110520 | TCONS_00013137-exon-sc0000162-1510915933:109978..110520 | Clytia hemisphaerica | exon |
| TCONS_00013137-exon-sc0000162-1510915933:109597..109762 | TCONS_00013137-exon-sc0000162-1510915933:109597..109762 | Clytia hemisphaerica | exon |
| TCONS_00013137-exon-sc0000162-1510915933:107960..109023 | TCONS_00013137-exon-sc0000162-1510915933:107960..109023 | Clytia hemisphaerica | exon |
| TCONS_00013137-exon-sc0000162-1491911889:110624..111196 | TCONS_00013137-exon-sc0000162-1491911889:110624..111196 | Clytia hemisphaerica | exon |
| TCONS_00013137-exon-sc0000162-1491911889:109978..110520 | TCONS_00013137-exon-sc0000162-1491911889:109978..110520 | Clytia hemisphaerica | exon |
| TCONS_00013137-exon-sc0000162-1491911889:109597..109762 | TCONS_00013137-exon-sc0000162-1491911889:109597..109762 | Clytia hemisphaerica | exon |
| TCONS_00013137-exon-sc0000162-1491911889:107960..109023 | TCONS_00013137-exon-sc0000162-1491911889:107960..109023 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000162 | supercontig | sc0000162:107960..111196 - |
Blast
The following BLAST results are available for this feature:
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