TCONS_00013146 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013146
Unique NameTCONS_00013146
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1445

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013146 ID=TCONS_00013146|Name=TCONS_00013146|organism=Clytia hemisphaerica|type=transcript|length=1445bp
GTTTAGATAAtggaagaaaacaaaagaatcacaTCTTCTGGTGAAAATAT
TCAGAAACCTTTAAAAGTGAAAGTTTACAAGAAACGATGGATCATACTGT
TCATATTTGCAATAAATTCTTTGGCAAATGCTCTATTATTTGTGTCAACC
ACATCCATCAATAGTATTATCTGCAGATATTACAATATTTCACCATCGCT
GACAGATTGGTCTGGGAATAGCTTTGCTGTTGTGTTTGTGTTGATTGCAT
TACCTTCTGCTTACTGTATGGATTCATTTGGTGTAAGGACTTTGGTACTG
ATAGGCTCAAGCTTAAATGCCATCTGTGTTTGTTTACATGTAGCAGGTAC
AGCTAGAGAAAATGGCATATGGTATGTGTTGACTGGTCAATTCATTGCTG
GCTTTTCAGTTGGTGCAATCCTCCAGGTACCCCCACGTCTTGCTTCAGTA
TGGTTCCCAGAACACGAACAAGCTAGAGCTGTAAGCATGGCTACTGGATT
CAATGTGTTGGGATTGGCAATTGGTTTTTTACAGTCATCTTACATGGTTC
CAGATAGTGAAAATATGGATGAAATTTATGATGGATTATTGAAGATGAAT
ATTTCACATGTTGCTCTCTTAGCAGTGTGTTTGATATctgcttatttatt
ttttgatgaaaaacctCCATTACCACCCTCGTATGCCAAAGCTGTTCTCG
ATAGTTCAAGCGTAGATGAACATGTTGATACACCTGGCTTTAAACTTTCC
TTAAAAATGCTTTTCACTGACaaagattttatgattttggcGTTTGTTTA
CGGTATACAGTTTGGATTATATAATATGTTTGTGACTTGCCTCAATGAAA
TGTCCAGCAATATCACAAGCTCAGCAAACATTGGTTGGCTTGGATTCATC
AGTAATGTCATCAGTATTGTGGGAATCTTATCATTTGCTGCTCTGGCCGA
TAAATACAGATTTTATAAAAAGATAACTCATTTTCTGTTCTTTGTACAAA
TTCTTTGTTGGGTAGGATTCAGTGCTGCTACTCTATATTGGAAAACGACA
GCCACACTTTTTATCACCTACTGTTTAGTGTCATTCTTCAACGTACCTTT
CATAGCTGTTGGTTTGTCATATGCTACAGAGCTTACGTATCCTGTGACTG
AAGGGATGTCCAGTGCCATTGTACTAATAATTGGAAATTTGATTGGATCT
TCAAGTGTTTTTGCGTTTGGGAAATTGATTGATAATGGATATATGTTTTT
GATGTGTAGCATTGTCACTGGAATGTATGTGGTCGCCTTTATCTTGACTT
TCTTCGTCAAGGAGAATTTAAAGAGATCTGACCAAGAATCGCAACACAAC
AGTGATTCACATTATCCAATTTCTAAAGATACTTGATCGTGTCGATTTAT
TATCTTGTTTTAGTGATTCTTTAGCATGACACCAatcttttttca
Run BLAST on NCBI

transcript from alignment at sc0000162:206909..208353-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013146 ID=TCONS_00013146|Name=TCONS_00013146|organism=Clytia hemisphaerica|type=transcript|length=1445bp|location=Sequence derived from alignment at sc0000162:206909..208353- (Clytia hemisphaerica)
GTTTAGATAATGGAAGAAAACAAAAGAATCACATCTTCTGGTGAAAATAT
TCAGAAACCTTTAAAAGTGAAAGTTTACAAGAAACGATGGATCATACTGT
TCATATTTGCAATAAATTCTTTGGCAAATGCTCTATTATTTGTGTCAACC
ACATCCATCAATAGTATTATCTGCAGATATTACAATATTTCACCATCGCT
GACAGATTGGTCTGGGAATAGCTTTGCTGTTGTGTTTGTGTTGATTGCAT
TACCTTCTGCTTACTGTATGGATTCATTTGGTGTAAGGACTTTGGTACTG
ATAGGCTCAAGCTTAAATGCCATCTGTGTTTGTTTACATGTAGCAGGTAC
AGCTAGAGAAAATGGCATATGGTATGTGTTGACTGGTCAATTCATTGCTG
GCTTTTCAGTTGGTGCAATCCTCCAGGTACCCCCACGTCTTGCTTCAGTA
TGGTTCCCAGAACACGAACAAGCTAGAGCTGTAAGCATGGCTACTGGATT
CAATGTGTTGGGATTGGCAATTGGTTTTTTACAGTCATCTTACATGGTTC
CAGATAGTGAAAATATGGATGAAATTTATGATGGATTATTGAAGATGAAT
ATTTCACATGTTGCTCTCTTAGCAGTGTGTTTGATATCTGCTTATTTATT
TTTTGATGAAAAACCTCCATTACCACCCTCGTATGCCAAAGCTGTTCTCG
ATAGTTCAAGCGTAGATGAACATGTTGATACACCTGGCTTTAAACTTTCC
TTAAAAATGCTTTTCACTGACAAAGATTTTATGATTTTGGCGTTTGTTTA
CGGTATACAGTTTGGATTATATAATATGTTTGTGACTTGCCTCAATGAAA
TGTCCAGCAATATCACAAGCTCAGCAAACATTGGTTGGCTTGGATTCATC
AGTAATGTCATCAGTATTGTGGGAATCTTATCATTTGCTGCTCTGGCCGA
TAAATACAGATTTTATAAAAAGATAACTCATTTTCTGTTCTTTGTACAAA
TTCTTTGTTGGGTAGGATTCAGTGCTGCTACTCTATATTGGAAAACGACA
GCCACACTTTTTATCACCTACTGTTTAGTGTCATTCTTCAACGTACCTTT
CATAGCTGTTGGTTTGTCATATGCTACAGAGCTTACGTATCCTGTGACTG
AAGGGATGTCCAGTGCCATTGTACTAATAATTGGAAATTTGATTGGATCT
TCAAGTGTTTTTGCGTTTGGGAAATTGATTGATAATGGATATATGTTTTT
GATGTGTAGCATTGTCACTGGAATGTATGTGGTCGCCTTTATCTTGACTT
TCTTCGTCAAGGAGAATTTAAAGAGATCTGACCAAGAATCGCAACACAAC
AGTGATTCACATTATCCAATTTCTAAAGATACTTGATCGTGTCGATTTAT
TATCTTGTTTTAGTGATTCTTTAGCATGACACCAATCTTTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007344XLOC_007344Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013146-exon-sc0000162-1575043694:206909..208353TCONS_00013146-exon-sc0000162-1575043694:206909..208353Clytia hemisphaericaexon
TCONS_00013146-exon-sc0000162-1510915933:206909..208353TCONS_00013146-exon-sc0000162-1510915933:206909..208353Clytia hemisphaericaexon
TCONS_00013146-exon-sc0000162-1491911889:206909..208353TCONS_00013146-exon-sc0000162-1491911889:206909..208353Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:206909..208353 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.97819	5.40586	2.73932	1.70799	4.8845	3.40369	3.42012	3.17398	2.02009	2.32316	1.47005	0.884931	2.40964	2.57726	4.63869	5.5229	5.08527	4.73485	2.45495	2.29545	2.54107	2.54243	9.12547	9.67451	2.39326	3.02376	2.91401	1.80619	6.95415	5.54238
Blast
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BLAST of TCONS_00013146 vs. Swiss-Prot (Human)
Match: FLVC2 (Feline leukemia virus subgroup C receptor-related protein 2 OS=Homo sapiens GN=FLVCR2 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 5.276e-48
Identity = 130/442 (29.41%), Postives = 230/442 (52.04%), Query Frame = 1 
Query:   67 VKVYKKRWIILFIFAINSLANALLFVSTTSINSIICRYYNISPSLTDWSGNSFAVVFVLIALPSAYCMDSFGVRTLVLIGSSLNAICVCLHVAGTARENGIWYVLTGQFIAGFSVGAILQVPPRLASVWFPEHEQARAVSMATGFNVLGLAIGFLQSSYMVPDSENMDEI--YDGLLKMNISHVALLAVCLISAYLFFDEKPPLPPSYAKAVLDSSSVDEHVDTP--GFKLSLKMLFTDKDFMILAFVYGIQFGLYNMFVTCLNEMS--SNITSSANIGWLGFISNVISIVGILSFAALADKYRFYKKITHFLFFVQILCWVGFSAATLYWKTTATLFITYCLVSFFNVPFIAVGLSYATELTYPVTEGMSSAIVLIIGNLIGSSSVFAFGKLIDN-----GYMFLMCSIVTGMYVVAFILTFFVKENLKR--SDQESQHNS 1353
            +KV ++RW ++ +F+  S+ N+  ++   SIN+I   +Y +S    DW    + + ++ + LP A+ ++ FG+RT+ L GS+LN +   + + G+ + +     + GQ I   +   IL +P R+ASVWF  +E + A S+A   N LG+AIGFL    +VP+ E+ DE+  +  ++   I  VA L + L+   + F EKP  PPS A+      S+   + +P   +  S+  LF + +F++L   YG+  G +    T LN M          N G +G    +  ++G +      D+ + YK+ T  ++ + ++  V ++  TL       +FIT   + FF   ++ +G  +A ELTYP +EG+SS ++ I   + G     + G++IDN     G +FL C  +T    +   LT F+K +L+R  +++E+  N 
Sbjct:   78 IKVSRRRWAVVLVFSCYSMCNSFQWIQYGSINNIFMHFYGVSAFAIDWLSMCYMLTYIPLLLPVAWLLEKFGLRTIALTGSALNCLGAWVKL-GSLKPHLFPVTVVGQLICSVAQVFILGMPSRIASVWFGANEVSTACSVAVFGNQLGIAIGFLVPPVLVPNIEDRDELAYHISIMFYIIGGVATLLLILV--IIVFKEKPKYPPSRAQ------SLSYALTSPDASYLGSIARLFKNLNFVLLVITYGLNAGAFYALSTLLNRMVIWHYPGEEVNAGRIGLTIVIAGMLGAVISGIWLDRSKTYKETTLVVYIMTLVGMVVYT-FTLNLGHLWVVFITAGTMGFFMTGYLPLGFEFAVELTYPESEGISSGLLNISAQVFGIIFTISQGQIIDNYGTKPGNIFL-CVFLT----LGAALTAFIKADLRRQKANKETLENK 504
The following BLAST results are available for this feature:
BLAST of TCONS_00013146 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FLVC25.276e-4829.41Feline leukemia virus subgroup C receptor-related ... [more]
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