TCONS_00013150 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013150
Unique NameTCONS_00013150
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2066

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013150 ID=TCONS_00013150|Name=TCONS_00013150|organism=Clytia hemisphaerica|type=transcript|length=2066bp
tcttttggaCGATGATAAGTATGGTCAATGTGAAAAATTCGAGgcaTTCA
GCTGCAATTACAAGCTACGATTATTTCCCAACGGCATCCAGTCACGTCAG
TGTTGGAAGTCACCCTGGTGATTACAAGAAGCAGCCTAGCAGTTCAATGG
AAGACTCCCCTGTAGTGTGTCTACCTCCAACTCTCATTGTCAACGAACGA
GTGAGTAACAGTGACAAGTCTTCAGAGCTATCAGAAGAAAGATTATGCGC
CATCTGCAGTGATCGGTCTACAGGCAGACACTATAAAGTTTATTCTTGTG
AGGGTTGTAAGAATTTCTTTCGAAGAAGTGTCCGAAAAGATGTGAAATAT
GTCTGTCCGGCGTATGGAAAATGTCCGGTACATAAAGATCAACGAACTAG
ATGCAAAGCTTGCAGActgagaaaatgtttgaaagttGGGATGAGGAAAG
AAGCTGTACAATGTGAACGCAAGCCATTGGTATTGACGCAACTCTCGGTA
CCGAGTATTGACGACAAAGTGAACCGAAACAAAACCATTGGTCTCGATTA
TCGAACGAGTTCCGACGAGAGCGATGACGACAAACGATCAGATCCGTTAA
CAAACAAAACATCTTCCACATCCAGTGAAAAAGATAACGCCCTTCTAAAT
GTTGTCATAGACAGGGTGGATGAAGAGGGTGGAAGGGCGCTTTTGAATTT
AGCTCAAAGTTGCCAACGGAAACCGATTTCGATAGATAGTGATGAGAACT
TGATGCAGTATTCAGAAATAGGAACCATCAAATCGGAATGTTCAGACGAA
ACACCCCCGTCATCTCACACCTCTTACCCGGCCTATACGGAAAAACCACC
AGAAGTGCTCAGTTTAGCACATGGACGATTCCACCCATATAACCGTGCAA
CGTCCTTACCTTTTCGTAACAGTTTCACACCTCAACATAATGGGTGGACC
CTGGATATGTCGACTATgtccaaaaacaaaaactttgtcctTGAAGCTCC
TTCAATTTCCACAACTGATGTCGGCTATTTATACGAAATTTCAACTCGTT
TATTATTCGCTACTCTAGACTGGGTACAAACGTTAGAACCTTTTCAAAAA
CTCTGCAAAGTAGACCAATTTACATTACTGTTAAATAAATGGCATTCTTT
ATTCATCCTTGGTATGGCACAATCTTCACCAATGTTTCCGATATCAACAA
TGTTGTTTTTGGCGAACACTGGTCATGAACCACACTCTGATCAAACCAAC
ACACATCTACCATGGAGCACGTTCTTGAAATTGAAAGATGTGATAATGAA
TGGATTCGTGGAATGCAAAATATCGATGGAGATTTATAATTGCATGAAGA
TTATCGCTCTTTTTGATCCGGaaatCCCTGGCCTTGGGGACCGAGAATTC
ACCCGCCGCACATGCGCACACTCGCGACAATTATTGGAAGATCTCTTCGA
AAATAATCAGAATCCAAAAGACTCGATGGATAATGATAAGACGAACTTGA
ATCAACAACGTATGTTTAAAGTTTTAGAATGTGTGAACACGATACGTAAA
GTTGAAGTGACTGATACTTTCTTTGTACCCATATTGAGACAGACCTCTAT
TGAGTACGTCATACAAAAGGTTTTGAATGCAGAGAAAGATTGAGCGGAGA
ATATTAATCCACGCGTTTTGGATGGCAACTGCAATAGCATAtaagaaaaa
aactaaactacgaATAAAATAAATCTAACTCTGATTCTCAGACCTCTACG
GACATACTTGAGGATTAGTATAAATGGTGGGGGTGAGGATGAGTATTGAT
CGAGAAGTTTTCCTGTGCTTGGCACTAAATGGGAGAAAAGAttgagtttt
tcatttttagaaaaacttgatAGGTAGTTGGAAACCCACAGAGAGCGAAT
Tagctgttgaaaattttttttctgttttactatgttaaaaacgaaatttt
caaaacataattttgggatattattattattgtaaaAATTTAGTGTGTTA
TTTGTATATTATATGATTATATATTATCAAATCAAATctatcaaaacttt
taaaacatataccatc
Run BLAST on NCBI

transcript from alignment at sc0000162:243412..252205-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013150 ID=TCONS_00013150|Name=TCONS_00013150|organism=Clytia hemisphaerica|type=transcript|length=8794bp|location=Sequence derived from alignment at sc0000162:243412..252205- (Clytia hemisphaerica)
TCTTTTGGACGATGATAAGTATGGTCAATGTGAAAAATTCGAGGTAAAAA
TTCCGTCCACTCTTTTTTATAAGAACCATTTTAGTTGACGTTCCGCTGTT
CTTAATTTCAGCCTCTTGTTGTTCTTATCTTGATCTTATTTTTTAGCTTT
GTTGTTCTTGCAAAATTGAAGCTAGAATGAGATGCAGGGATGTAAATGTA
GTCGTATTTTTCTGTTTATAAATTCAAATCAGAACTGTTGTACGGTATGC
AGCCGTGACTTGAATTGTTCATTCTCAGGGATACCTTTTGGGTCCTCTAG
AGTTCTAGAATGGTGTTTAACTCTATGTGAGTCTGAATACTCACTCTGAT
ATTCTATACAAAAAATACCCATCATCAGTTTTATACATAAAGGGTTGGAC
TCTCTTTACTCCTTCCCTCTATGCAATCAGCAAAAGAATTTAGATGATAT
GCAACTGTAACGTAATACCAATTTTAATTTTTTTCTAAAACTTATAACAA
AAGTTCAAACTCTGTATTATAAAAGCATATCAAGTGAACTTTATTATATG
ATATATATTTTTCTTTCTCTTACGATTGTTTTTTATCATTCCTACTCATG
TTGTAAAGCTTTGAGTAGAGGGAAAGCTTGCGTGACTTAAGGGGTGGCTT
GTCACGCCATACTTTTTAACCGTTGTCTATCCAAGTTGGGTCAGATCATT
CTAAGCGTTATGTATCTTAATGACGTCGATTTTTGCGCAAAAATTTGACC
CCATAACCAATATTATTATTCGGGACGTCCCTTATGTTTAAAAGGTCAAA
TGAAAGAGATTGAACCCCCGTCTTTGGTTATGAAACAGTATCCTTCAACA
ATAGCTTGAAACTGCGTTGGTAGTTTTTCTCATAATTTGACTTTCTGATA
AAATATCGAAAACGAGGTCACTCAAACATGGGGATTTGATACATGACATT
GTGAAAGACAGAAATGAGGACTTGCTACTGGCTAACTCGTTTTAAAGGCG
CTCTTTGATTGGTTCGTTCCATCTACAGTTACGAAATGTAATGAATATGT
CGTAAGACAAAAGTTGTAGTCGGAGGTTATGAATCAAAAATATTGAGATG
AAAAGTGAAAAGACAGACGTTACACATGTAATATTAAAAAGTTCGTTGAC
TTCATCAATTTATAAACAACTTACAAGATAAAAAAGGCTTTTCTCTTCGA
AACCAAGAAGGTTGGGAATGAAGACAGTTTGGAGGGTTTTAATGGCAAGT
TGACCTAGCCCAAAGAATAAAGTTTTAATGAAATTGTATTTTTTTCTTCA
GGCATTCAGCTGCAATTACAAGCTACGATTATTTCCCAACGGCATCCAGT
CACGTCAGTGTTGGAAGTCACCCTGGTGATTACAAGAAGCAGCCTAGCAG
TTCAATGGAAGACTCCCCTGTAGTGTGTCTACCTCCAACTCTCATTGTCA
ACGAACGAGTGAGTAACAGTGACAAGTCTTCAGAGCTATCAGAAGAAAGA
TTATGCGCCATCTGCAGTGATCGGTCTACAGGCAGACACTATAAAGTTTA
TTCTTGTGAGGGTTGTAAGAATTTCTTTCGAAGAAGTGTCCGAAAAGATG
TGAAATATGTCTGTCCGGCGTATGGAAAATGTCCGGTACATAAAGATCAA
CGAACTAGATGCAAAGCTTGCAGACTGAGAAAATGTTTGAAAGTTGGGAT
GAGGAAAGAAGGTTTGTCTTCAGTTTTCATTCTTTATTTTGTAGAGAAAA
CTTTCTTTCAGTAGAATTCCAGGATGAATATTCTCTTAATTTTCGACCCA
TTGCATTTTCATATTTCGCTTGCATTCAGAAATCATATTATTTTAGGGTC
AAAGATAAGAAACAAAATTTGCTTATCAAGAAACAAAACCCAAACACCTG
CAATACACACATCATACATTCTCACTTTTTCTAGGCTCTTTTGGGAAAGA
AAACTCCGCAGAGTCTTTAGGGTACGTAGAAATTTCAAAATATTTAACAG
TAAATTGTTGGCTAAAATTTGAGTTTTATTTAATTGGGCTTAGTTGGCAG
GATCAGGATGATGAATTTTAAGCTCGATTAGTTAAGGACTCAATACTGTA
GGAATAAGGTTGCACAAAACTTGACCCAGTTTGAAAAAAATATCAGGAAA
CTTTACCAAATATCAAATTAATTATAAATATTAACATGCTGTCACGTGAA
TTTTCTTAACAGAGAGCGAAGATAAAAGACTCAGCATTGATAATCAATGT
TTTTAAAAATAGACGTTCTTAAAGCTTCTCGAGGTTGTGTTATGTTTTAA
ATTTCTGCATGACATCGAGCCAAGGTCAGAAATTCATTAATTGTCCTGTC
TCAATACAAATCAAATGTCAAAAAAAACTCCAAAGATGGTATCATAATCT
AAAGAATTATATGCAAACCCGATTAGAATTTCTCGAAAGTATTTTTCTCC
TCTATTTTTTAATGATTGCGTTAGTGGTTTTACAGGGACAAATAAAAGTT
ATACTGTATACTAGTGTCTCACATAACTGACTATCAAAATATCTGATAAC
AATTTCTTTTGTTTAACCTTTCCCTATTGTCCTTTTCATCCAATCAAGAT
AAGTTTCTCATGAAAATCCAATCAGTTCAATGACATCATTTCTCTTCGAA
TTCAAGTTTTGGAAAGTCTCTCGGAACTCCTCTTTTTTCCTGGAAGATTG
AGATATCTTTTTTTCATAAGAAGCCGTAAAATTTGGCTGAGATTTGGCTA
ATCCTATTATGATTGGGGTTTTTGGGAACGAGTGTTACTAACATTATATG
TTCTCACTTTACTCACTTATTTAGTCAAATGAGTTTAATATCTTGTAGAG
AATCTTCTTTCTCTAGAGTTTTAAATACATAGTAGAGCTGTCAAATGGGC
TTTTTCTTGGTCGCATCTGAAATCTGACGTGAAAAACGGTCTTATCTGTC
CTTAGTTTTTTTTCCTTATAAAATTGTTCTTAAAAACGTGTCTTTCAAAA
TTTTCTTTCCTTGTTTATTAGCTGTACAATGTGAACGCAAGCCATTGGTA
TTGACGCAACTCTCGGTACCGAGTATTGACGACAAAGTGAACCGAAACAA
AACCATTGGTCTCGATTATCGAACGAGTTCCGACGAGAGCGATGACGACA
AACGATCAGATCCGTTAACAAACAAAACATCTTCCACATCCAGTGAAAAA
GATAACGCCCTTCTAAATGTTGTCATAGACAGGGTGGATGAAGAGGGTGG
AAGGGCGCTTTTGAATTTAGCTCAAAGTTGCCAACGGAAACCGATTTCGA
TAGATAGTGATGAGAACTTGATGCAGTATTCAGAAATAGGAACCATCAAA
TCGGAATGTTCAGACGAAACACCCCCGTCATCTCACACCTCTTACCCGGC
CTATACGGAAAAACCACCAGAAGTGCTCAGTTTAGCACATGGACGATTCC
ACCCATATAACCGTGCAACGTCCTTACCTTTTCGTAACAGTTTCACACCT
CAACATAATGGGTGGACCCTGGATATGTCGACTATGTCCAAAAACAAAAA
CTTTGTCCTTGAAGCTCCTTCAATTTCCACAACTGATGTCGGCTATTTAT
ACGAAATTTCAACTCGTTTATTATTCGCTACTCTAGACTGGGTACAAACG
TTAGAACCTTTTCAAAAACTCTGCAAAGTAGACCAATTTACATTACTGTT
AAATAAATGGCATTCTTTATTCATCCTTGGTATGGCACAATCTTCACCAA
TGTTTCCGATATCAACAATGTTGTTTTTGGCGAACACTGGTCATGAACCA
CACTCTGATCAAACCAACACACATCTACCATGGAGCACGTTCTTGAAATT
GAAAGATGTGATAATGAATGGATTCGTGGAATGCAAAATATCGATGGAGA
TTTATAATTGCATGAAGATTATCGCTCTTTTTGATCCGGGTAAGATTTCA
TTCTTTGATGATTGTTGCACCCATTTCTACACCCCTTTCTCACAGACCCA
GTAGAATTCTCAACTTCAGTTGAGCTAGAATCTGACAATGTATATATGTC
TGTCCGAAAACTTTGGGACAGGCTTGAGACTTCAAAGATGGTCGAATTTG
GCTGAAATCTAGCACACTTGTTGCTTGACTGAATATCTGGGGTGTCTTTT
TTATTTTTTGAAAGTTTTCATTTATAAGGGCTTGGTCATGAGTTTTAGCT
CCAAAACGAGGCTGAAACTTTGGGGGTAGGCTTGAGACTTGACTAGGTTT
TGGCTGAAATTTGGCCCACTTGTTCATTTGGTGAAAATGTGATTTTTCAT
TTTTTGAAAATCTTTGGAAAAAATGGAGTATAATTTTCCACTGGGGAAGA
TATTTTGGCCAATTCTTCGAGTAGGAGGGGGTCCCACCGGGTCTGTGAGA
AGGGTTATATTTCTGAAGTCTCAGAAAGCTAGTTGAGTTCACAATGATCA
CTATAAACTAACAGAGAGTCCCACCAAAGCTATTTTATTATTCCACTGGA
GAGAGCGTTATTCAGAAACTACAAGAAAACTACTTTGAATTTTGAATTTC
TATCAAAAAATTTATTACGTTGAATGACCACATAAGGGAACCAGTTTTTT
ACGGTCTAGTCCATTTTCCTGGCTCCCAGAGAAAATTGAAATGCTTTTTT
TACCTCTATTAATTTAGAAGGTATTTACTGTAATTTAAATTTAAGAAAGA
CTGGAAAATAGATGTCTGCATCGTAACCACCTTTTGTTTTGGAAAGTCAG
GGAATCCCTTTTCGTTCTTAATTTTCCATCATGACATATTCACGACAGAC
TTAATTAATTCACCGTTTACATTGTGAAAAGAAAACGTCATTTTAAGCTG
TAAGCTCATCAGTGCACGCAAGTCACAAACAATACAACAGAAACAGTAGG
AAACGAGCTCACGAGACACTTCATGTGCTTATATATACCGAGTTCAACGG
ATTTAATGATGAAAAGAATATAAGAATAAAATGAAGTAACGAAATTCGTG
AGTTCAACATGGGCTTGAAATTTCACGAAATCGACCTAAGTCTTTTTCTT
GACTTCCTTTTGAACAGTGAGAAATCCCCATTCATTTCCACTAGGTGTGC
GGGCTTCACTTTCAAGCATTTTATTCTCCATGCTCACTCACTCGAAACAC
AGTCTTATGTACTGGAGATTTTTAAAACTTAAACTGTGAACACTGATAGC
CCTGATAGCCTTCTCACCCAAAAAGGCCAGATCTCTTAAAGAGCGAGATT
GAAGTTTTACTTGCTATTCTACTCGAAGTCATATCCAAAAAAAGGGGAAA
AGTAAAATTTCTCAAAAAAGAAAAAGAAACTGCGAATCTCTAATAACTGA
TAAACTTTCAATCTTTTCAGGGATAATTTTACTTCAATGATTATATACAC
GAGTCTGAAACTTTGCGTGACTCCCACTCCATAATATATCTCCCTTTATT
TATTTTCAGAAATCCCTGGCCTTGGGGACCGAGAATTCACCCGCCGCACA
TGCGCACACTCACGACAATTATTGGAAGATCTTTTCGAAAATAATCAGAA
TCCAAAAGACTCGATGGATAATGATAAGATGAACTTGAATCAACAACGTA
TGTTTAAAGTTTTAGAATGTGTGAACACGATACGTAAAGTTGAAGTGACT
GATACTTTCTTTGTACCCATATTGAGACAGACCTCTATTGAGTACATCAT
ACAAAAGGTTTTGAATGCAGAGAAAGATTGAGCGGAGAATATTAATCCAC
GTTTTGGCTGGCAACTGCAATAGCAAATATATAATAGTAAAATAGCAAAA
AACAAAAAAATAAACTATGAATAAAATAAAACCAACTTTGATTCTCAGAC
CTCTACAGATATACTTGAGGATTAGTATTGATCCAGAAGTTTTCCTGTGT
TTGGCACTAAATGGGACAAAAGATTGAGTTTTTCATTTTTAGAAAAACTT
GATGGGTTGGAAACCCATAGAGAGCGAATTAGCTGTAAAACCAATTTTTT
TTCTGTTTTACTATGTTAAAAACGAAATTTTCAAAACATAATTTTGGGAT
ATTATTATTATTGTAAAAATTTAGTGTGTTATTTGTATATTATATGATTA
TATATTATCAAATCAAATCTATCAAAACTTTTAAAACATATACCACCAAA
AGTTTCGAATATTTTTTTTCTAGTGGAATGAGTCATACATTTACGGCGAT
TTTTGGGATTTCTGATATTTTCTTGGGGGTTTGTAGTTTGTATATTTGTA
CTTTTAAGGGGTTTTGCAATTTACGGCTGAAGGTGATTGTACAAAAAAAT
TTAAGATATTAAGTTGAAATGTGTACAAGATACTTGGCAAATCAGCTAAA
ATGAAAAATATTTGCAGTTATTTAGCGAGGTTTTTACACCCCTTTTTCTG
AGTTTTCAGGGTTATTTTCAAACTTTTTTTTTCCCGTTGATGGTTTGTCA
ATTTTTTTTTTCTTTTTCGAGTTTTGTTTAAACTTCATGATGAGGTCATC
GCGTAAGTACTGATTTTGTTAAGGGGTTTTTGTCGTGAGCCTTTAGCACG
CTATATAGAGAGCATCGTCTTGCATTTCAACGTGAATCGGTAAGCGAAGA
AAATTTTCAGATTTTCGATTGGAGTAATATTTTGTAGATGAAAGGAAATA
TAAATCAAGTTGAAACATAGCGTTGAAACAGTGATGATCCTTTAATGAAA
TTGGGGAGTTGGTCTGAAGTTTTGGTGATGTTTCTTTTTTCTTTATGAAG
AACAAAACGAAAAATCTGATTTTTTAGTTTGAATACTTGAATACTTTTTA
TTGGAAGAGTTCCATTTTAACTAATTTACTATTTTACACCATTTCCAATA
AAACGATTCCAAAAATGATTTTTTTAGTTGTTAATTTTTCACAACATAAC
GAGATCTTGCATAACAAGCAGAGCAGGCCAAATTTTTTGTGGATAGTTGA
TGGATATTCGAGTANGGGCGGGGACAAAAATCAGAGTATAATTTTCTACT
GGGTAAGATATTTGAGCTAATTTTTCCAGTGGAAGGGGGTCCCACTGGGT
GTGTGATAAGGGGTGTATTTCTCATGTCTCGGAAAGCCAGTGGGATTACT
ATAATTAAACCAACAGAAAATCAAAATATTTTCTAATGCATAGAGTATGA
TTCAGCAACCTAAAAAATACTTGGATTTTGAATTTCTATCAAGGAAGATT
AATACCAATTTTTATGGTCTAGTCGATTTTAATGGCTCCCAGAGAGAACG
ATAATGATTTTTTACCTCTATTACTCGAACTAGTAATTCGAGTTACTTAG
GGGGCATTTTCTACAGTTTGAATTTCAAAAAGACATGGAAAATAGATGTT
CGTATCGTAACCGCCTTTCGTTTTGGAAAGTCAGGGAATCCCTTTTTCGT
TTCTTATTTTTCCATCATGACATATTCACGACAGACTTAATTAATTGACC
GTTTACATTGTGAAAAGAAAACGTCATTTTAAGCTGTAAGCTCATAAGTG
CACGCAAGTCACAAACAATACAACAGAAACAGTAGGAAACGAGCTCACGA
AACACTTCATGTGCTTATATATACCGAGTTCAACGGATTTAATGATGAAA
AGAATACAAGAATAAAATGAAGTAACGAAATTCGTGAGTTCAACATGGGC
TTGAAATTTCACGAAATCGACCTAAGTCTTTTTCTTGACTTCCTTTTGAA
CAGTGAGAAATCCCCATTCATTTCCACTAGGTGTGCGGGCTTCACTTTCA
AGCATTTTATTCTCCATGCTCACTCNATCTTTTTCTTGACTTCCTTTTGA
TCAGTGAGAAATCCCCATTCATTTCCACTAGGTGTGCGGGCTTCACTTTC
AAGCATTTTATTCTCCATGCTCATTCTCTCGATCTCTTAAAGAGCGAGAT
TGAAGTTTTACTTGCTAATCTACTCATATCCAAGAGGGGAAAAGTAAAAT
TTCTCAAAAAAAAAAGAAACCGCGAATCTCTAATAACTGATAAACTTTCA
ATCTTTTCAGGGATAATTTTACTTCAATAATTATATACACCAGTCTGAAA
GTTTGCTTGACTCCCACTCCATAATATATCTCCCTTTATTTATTTTCAGA
AATCCCTGGCCTTGGGGACCGAGAATTCACCCATCGCACATGCGCACACT
CGCGACAATTATTGGAAGATCTCTTCGAAAATAATCAGAATCCAAAAGAC
TCGATGGATAATGATAAGACGAACTTGAATCAACAACGTATGTTTAAAGT
TTTAGAATGTGTGAACACGATACGTAAAGTTGAAGTGACTGATACTTTCT
TTGTACCCATATTGAGACAGACCTCTATTGAGTACGTCATACAAAAGGTT
TTGAATGCAGAGAAAGATTGAGCGGAGAATATTAATCCACGCGTTTTGGA
TGGCAACTGCAATAGCATATAAGAAAAAAACTAAACTACGAATAAAATAA
ATCTAACTCTGATTCTCAGACCTCTACGGACATACTTGAGGATTAGTATA
AATGGTGGGGGTGAGGATGAGTATTGATCGAGAAGTTTTCCTGTGCTTGG
CACTAAATGGGAGAAAAGATTGAGTTTTTCATTTTTAGAAAAACTTGATA
GGTAGTTGGAAACCCACAGAGAGCGAATTAGCTGTTGAAAATTTTTTTTC
TGTTTTACTATGTTAAAAACGAAATTTTCAAAACATAATTTTGGGATATT
ATTATTATTGTAAAAATTTAGTGTGTTATTTGTATATTATATGATTATAT
ATTATCAAATCAAATCTATCAAAACTTTTAAAACATATACCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007345XLOC_007345Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013150-exon-sc0000162-1575043694:252163..252205TCONS_00013150-exon-sc0000162-1575043694:252163..252205Clytia hemisphaericaexon
TCONS_00013150-exon-sc0000162-1575043694:250495..250904TCONS_00013150-exon-sc0000162-1575043694:250495..250904Clytia hemisphaericaexon
TCONS_00013150-exon-sc0000162-1575043694:248267..249184TCONS_00013150-exon-sc0000162-1575043694:248267..249184Clytia hemisphaericaexon
TCONS_00013150-exon-sc0000162-1575043694:246707..246746TCONS_00013150-exon-sc0000162-1575043694:246707..246746Clytia hemisphaericaexon
TCONS_00013150-exon-sc0000162-1575043694:243412..244066TCONS_00013150-exon-sc0000162-1575043694:243412..244066Clytia hemisphaericaexon
TCONS_00013150-exon-sc0000162-1510915933:252163..252205TCONS_00013150-exon-sc0000162-1510915933:252163..252205Clytia hemisphaericaexon
TCONS_00013150-exon-sc0000162-1510915933:250495..250904TCONS_00013150-exon-sc0000162-1510915933:250495..250904Clytia hemisphaericaexon
TCONS_00013150-exon-sc0000162-1510915933:248267..249184TCONS_00013150-exon-sc0000162-1510915933:248267..249184Clytia hemisphaericaexon
TCONS_00013150-exon-sc0000162-1510915933:246707..246746TCONS_00013150-exon-sc0000162-1510915933:246707..246746Clytia hemisphaericaexon
TCONS_00013150-exon-sc0000162-1510915933:243412..244066TCONS_00013150-exon-sc0000162-1510915933:243412..244066Clytia hemisphaericaexon
TCONS_00013150-exon-sc0000162-1491911889:252163..252205TCONS_00013150-exon-sc0000162-1491911889:252163..252205Clytia hemisphaericaexon
TCONS_00013150-exon-sc0000162-1491911889:250495..250904TCONS_00013150-exon-sc0000162-1491911889:250495..250904Clytia hemisphaericaexon
TCONS_00013150-exon-sc0000162-1491911889:248267..249184TCONS_00013150-exon-sc0000162-1491911889:248267..249184Clytia hemisphaericaexon
TCONS_00013150-exon-sc0000162-1491911889:246707..246746TCONS_00013150-exon-sc0000162-1491911889:246707..246746Clytia hemisphaericaexon
TCONS_00013150-exon-sc0000162-1491911889:243412..244066TCONS_00013150-exon-sc0000162-1491911889:243412..244066Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:243412..252205 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00543804	0	0	0	5.36629e-07	0	0	0	0	0	0.455748	0.115744	0.251442	1.46029e-06	0	5.89898e-07	0.000261344	5.61232e-06	0	0	0	0	4.78494e-06	0	0	0	0.0222423	0.00208526	0	1.34412e-08
Blast
[Close]
BLAST of TCONS_00013150 vs. Swiss-Prot (Human)
Match: RXRB (Retinoic acid receptor RXR-beta OS=Homo sapiens GN=RXRB PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 4.025e-26
Identity = 52/100 (52.00%), Postives = 65/100 (65.00%), Query Frame = 3 
Query:  174 PPTLIVNERVSNSDKSSELSEERLCAICSDRSTGRHYKVYSCEGCKNFFRRSVRKDVKYVCPAYGKCPVHKDQRTRCKACRLRKCLKVGMRKEAVQCERK 473
            PP L V             + +RLCAIC DRS+G+HY VYSCEGCK FF+R++RKD+ Y C     C V K QR RC+ CR +KCL  GM++EAVQ ER+
Sbjct:  181 PPVLGVRGLHCPPPPGGPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQ 280
The following BLAST results are available for this feature:
BLAST of TCONS_00013150 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RXRB4.025e-2652.00Retinoic acid receptor RXR-beta OS=Homo sapiens GN... [more]
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