TCONS_00013155 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013155
Unique NameTCONS_00013155
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013155 ID=TCONS_00013155|Name=TCONS_00013155|organism=Clytia hemisphaerica|type=transcript|length=1576bp
AGGCTCTTTTGGGAAAGAAAACTCCGCAGAGTCTTTAGGCTGTACAATGT
GAACGCAAGCCATTGGTATTGACGCAACTCTCGGTACCGAGTATTGACGA
CAAAGTGAACCGAAACAAAACCATTGGTCTCGATTATCGAACGAGTTCCG
ACGAGAGCGATGACGACAAACGATCAGATCCGTTAACAAACAAAACATCT
TCCACATCCAGTGAAAAAGATAACGCCCTTCTAAATGTTGTCATAGACAG
GGTGGATGAAGAGGGTGGAAGGGCGCTTTTGAATTTAGCTCAAAGTTGCC
AACGGAAACCGATTTCGATAGATAGTGATGAGAACTTGATGCAGTATTCA
GAAATAGGAACCATCAAATCGGAATGTTCAGACGAAACACCCCCGTCATC
TCACACCTCTTACCCGGCCTATACGGAAAAACCACCAGAAGTGCTCAGTT
TAGCACATGGACGATTCCACCCATATAACCGTGCAACGTCCTTACCTTTT
CGTAACAGTTTCACACCTCAACATAATGGGTGGACCCTGGATATGTCGAC
TATgtccaaaaacaaaaactttgtcctTGAAGCTCCTTCAATTTCCACAA
CTGATGTCGGCTATTTATACGAAATTTCAACTCGTTTATTATTCGCTACT
CTAGACTGGGTACAAACGTTAGAACCTTTTCAAAAACTCTGCAAAGTAGA
CCAATTTACATTACTGTTAAATAAATGGCATTCTTTATTCATCCTTGGTA
TGGCACAATCTTCACCAATGTTTCCGATATCAACAATGTTGTTTTTGGCG
AACACTGGTCATGAACCACACTCTGATCAAACCAACACACATCTACCATG
GAGCACGTTCTTGAAATTGAAAGATGTGATAATGAATGGATTCGTGGAAT
GCAAAATATCGATGGAGATTTATAATTGCATGAAGATTATCGCTCTTTTT
GATCCGGaaatCCCTGGCCTTGGGGACCGAGAATTCACCCGCCGCACATG
CGCACACTCACGACAATTATTGGAAGATCTTTTCGAAAATAATCAGAATC
CAAAAGACTCGATGGATAATGATAAGATGAACTTGAATCAACAACGTATG
TTTAAAGTTTTAGAATGTGTGAACACGATACGTAAAGTTGAAGTGACTGA
TACTTTCTTTGTACCCATATTGAGACAGACCTCTATTGAGTACATCATAC
AAAAGGTTTTGAATGCAGAGAAAGATTGAGCGGAGAATATTAATCCACGT
TTTGGCTGGCAACTGCAATAGCAAATATATAATagtaaaatagcaaaaaa
caaaaaaataaactatGAATAAAATAAAACCAACTTTGATTCTCAGACCT
CTACAGATATACTTGAGGATTAGTATTGATCCAGAAGTTTTCCTGTGTTT
GGCACTAAATGGGACAAAAGAttgagtttttcatttttagaaaaacttga
tGGGTTGGAAACCCATAGAGAGCGAATTAGCTgtaaaaccaatttttttt
ctgttttactatgttaaaaacgaaattttcaaaacataattttgggatat
tattattattgtaaaAATTTAGTGTG
Run BLAST on NCBI

transcript from alignment at sc0000162:246128..250273-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013155 ID=TCONS_00013155|Name=TCONS_00013155|organism=Clytia hemisphaerica|type=transcript|length=4146bp|location=Sequence derived from alignment at sc0000162:246128..250273- (Clytia hemisphaerica)
AGGCTCTTTTGGGAAAGAAAACTCCGCAGAGTCTTTAGGGTACGTAGAAA
TTTCAAAATATTTAACAGTAAATTGTTGGCTAAAATTTGAGTTTTATTTA
ATTGGGCTTAGTTGGCAGGATCAGGATGATGAATTTTAAGCTCGATTAGT
TAAGGACTCAATACTGTAGGAATAAGGTTGCACAAAACTTGACCCAGTTT
GAAAAAAATATCAGGAAACTTTACCAAATATCAAATTAATTATAAATATT
AACATGCTGTCACGTGAATTTTCTTAACAGAGAGCGAAGATAAAAGACTC
AGCATTGATAATCAATGTTTTTAAAAATAGACGTTCTTAAAGCTTCTCGA
GGTTGTGTTATGTTTTAAATTTCTGCATGACATCGAGCCAAGGTCAGAAA
TTCATTAATTGTCCTGTCTCAATACAAATCAAATGTCAAAAAAAACTCCA
AAGATGGTATCATAATCTAAAGAATTATATGCAAACCCGATTAGAATTTC
TCGAAAGTATTTTTCTCCTCTATTTTTTAATGATTGCGTTAGTGGTTTTA
CAGGGACAAATAAAAGTTATACTGTATACTAGTGTCTCACATAACTGACT
ATCAAAATATCTGATAACAATTTCTTTTGTTTAACCTTTCCCTATTGTCC
TTTTCATCCAATCAAGATAAGTTTCTCATGAAAATCCAATCAGTTCAATG
ACATCATTTCTCTTCGAATTCAAGTTTTGGAAAGTCTCTCGGAACTCCTC
TTTTTTCCTGGAAGATTGAGATATCTTTTTTTCATAAGAAGCCGTAAAAT
TTGGCTGAGATTTGGCTAATCCTATTATGATTGGGGTTTTTGGGAACGAG
TGTTACTAACATTATATGTTCTCACTTTACTCACTTATTTAGTCAAATGA
GTTTAATATCTTGTAGAGAATCTTCTTTCTCTAGAGTTTTAAATACATAG
TAGAGCTGTCAAATGGGCTTTTTCTTGGTCGCATCTGAAATCTGACGTGA
AAAACGGTCTTATCTGTCCTTAGTTTTTTTTCCTTATAAAATTGTTCTTA
AAAACGTGTCTTTCAAAATTTTCTTTCCTTGTTTATTAGCTGTACAATGT
GAACGCAAGCCATTGGTATTGACGCAACTCTCGGTACCGAGTATTGACGA
CAAAGTGAACCGAAACAAAACCATTGGTCTCGATTATCGAACGAGTTCCG
ACGAGAGCGATGACGACAAACGATCAGATCCGTTAACAAACAAAACATCT
TCCACATCCAGTGAAAAAGATAACGCCCTTCTAAATGTTGTCATAGACAG
GGTGGATGAAGAGGGTGGAAGGGCGCTTTTGAATTTAGCTCAAAGTTGCC
AACGGAAACCGATTTCGATAGATAGTGATGAGAACTTGATGCAGTATTCA
GAAATAGGAACCATCAAATCGGAATGTTCAGACGAAACACCCCCGTCATC
TCACACCTCTTACCCGGCCTATACGGAAAAACCACCAGAAGTGCTCAGTT
TAGCACATGGACGATTCCACCCATATAACCGTGCAACGTCCTTACCTTTT
CGTAACAGTTTCACACCTCAACATAATGGGTGGACCCTGGATATGTCGAC
TATGTCCAAAAACAAAAACTTTGTCCTTGAAGCTCCTTCAATTTCCACAA
CTGATGTCGGCTATTTATACGAAATTTCAACTCGTTTATTATTCGCTACT
CTAGACTGGGTACAAACGTTAGAACCTTTTCAAAAACTCTGCAAAGTAGA
CCAATTTACATTACTGTTAAATAAATGGCATTCTTTATTCATCCTTGGTA
TGGCACAATCTTCACCAATGTTTCCGATATCAACAATGTTGTTTTTGGCG
AACACTGGTCATGAACCACACTCTGATCAAACCAACACACATCTACCATG
GAGCACGTTCTTGAAATTGAAAGATGTGATAATGAATGGATTCGTGGAAT
GCAAAATATCGATGGAGATTTATAATTGCATGAAGATTATCGCTCTTTTT
GATCCGGGTAAGATTTCATTCTTTGATGATTGTTGCACCCATTTCTACAC
CCCTTTCTCACAGACCCAGTAGAATTCTCAACTTCAGTTGAGCTAGAATC
TGACAATGTATATATGTCTGTCCGAAAACTTTGGGACAGGCTTGAGACTT
CAAAGATGGTCGAATTTGGCTGAAATCTAGCACACTTGTTGCTTGACTGA
ATATCTGGGGTGTCTTTTTTATTTTTTGAAAGTTTTCATTTATAAGGGCT
TGGTCATGAGTTTTAGCTCCAAAACGAGGCTGAAACTTTGGGGGTAGGCT
TGAGACTTGACTAGGTTTTGGCTGAAATTTGGCCCACTTGTTCATTTGGT
GAAAATGTGATTTTTCATTTTTTGAAAATCTTTGGAAAAAATGGAGTATA
ATTTTCCACTGGGGAAGATATTTTGGCCAATTCTTCGAGTAGGAGGGGGT
CCCACCGGGTCTGTGAGAAGGGTTATATTTCTGAAGTCTCAGAAAGCTAG
TTGAGTTCACAATGATCACTATAAACTAACAGAGAGTCCCACCAAAGCTA
TTTTATTATTCCACTGGAGAGAGCGTTATTCAGAAACTACAAGAAAACTA
CTTTGAATTTTGAATTTCTATCAAAAAATTTATTACGTTGAATGACCACA
TAAGGGAACCAGTTTTTTACGGTCTAGTCCATTTTCCTGGCTCCCAGAGA
AAATTGAAATGCTTTTTTTACCTCTATTAATTTAGAAGGTATTTACTGTA
ATTTAAATTTAAGAAAGACTGGAAAATAGATGTCTGCATCGTAACCACCT
TTTGTTTTGGAAAGTCAGGGAATCCCTTTTCGTTCTTAATTTTCCATCAT
GACATATTCACGACAGACTTAATTAATTCACCGTTTACATTGTGAAAAGA
AAACGTCATTTTAAGCTGTAAGCTCATCAGTGCACGCAAGTCACAAACAA
TACAACAGAAACAGTAGGAAACGAGCTCACGAGACACTTCATGTGCTTAT
ATATACCGAGTTCAACGGATTTAATGATGAAAAGAATATAAGAATAAAAT
GAAGTAACGAAATTCGTGAGTTCAACATGGGCTTGAAATTTCACGAAATC
GACCTAAGTCTTTTTCTTGACTTCCTTTTGAACAGTGAGAAATCCCCATT
CATTTCCACTAGGTGTGCGGGCTTCACTTTCAAGCATTTTATTCTCCATG
CTCACTCACTCGAAACACAGTCTTATGTACTGGAGATTTTTAAAACTTAA
ACTGTGAACACTGATAGCCCTGATAGCCTTCTCACCCAAAAAGGCCAGAT
CTCTTAAAGAGCGAGATTGAAGTTTTACTTGCTATTCTACTCGAAGTCAT
ATCCAAAAAAAGGGGAAAAGTAAAATTTCTCAAAAAAGAAAAAGAAACTG
CGAATCTCTAATAACTGATAAACTTTCAATCTTTTCAGGGATAATTTTAC
TTCAATGATTATATACACGAGTCTGAAACTTTGCGTGACTCCCACTCCAT
AATATATCTCCCTTTATTTATTTTCAGAAATCCCTGGCCTTGGGGACCGA
GAATTCACCCGCCGCACATGCGCACACTCACGACAATTATTGGAAGATCT
TTTCGAAAATAATCAGAATCCAAAAGACTCGATGGATAATGATAAGATGA
ACTTGAATCAACAACGTATGTTTAAAGTTTTAGAATGTGTGAACACGATA
CGTAAAGTTGAAGTGACTGATACTTTCTTTGTACCCATATTGAGACAGAC
CTCTATTGAGTACATCATACAAAAGGTTTTGAATGCAGAGAAAGATTGAG
CGGAGAATATTAATCCACGTTTTGGCTGGCAACTGCAATAGCAAATATAT
AATAGTAAAATAGCAAAAAACAAAAAAATAAACTATGAATAAAATAAAAC
CAACTTTGATTCTCAGACCTCTACAGATATACTTGAGGATTAGTATTGAT
CCAGAAGTTTTCCTGTGTTTGGCACTAAATGGGACAAAAGATTGAGTTTT
TCATTTTTAGAAAAACTTGATGGGTTGGAAACCCATAGAGAGCGAATTAG
CTGTAAAACCAATTTTTTTTCTGTTTTACTATGTTAAAAACGAAATTTTC
AAAACATAATTTTGGGATATTATTATTATTGTAAAAATTTAGTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007345XLOC_007345Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013155-exon-sc0000162-1575043694:250235..250273TCONS_00013155-exon-sc0000162-1575043694:250235..250273Clytia hemisphaericaexon
TCONS_00013155-exon-sc0000162-1575043694:248267..249184TCONS_00013155-exon-sc0000162-1575043694:248267..249184Clytia hemisphaericaexon
TCONS_00013155-exon-sc0000162-1575043694:246128..246746TCONS_00013155-exon-sc0000162-1575043694:246128..246746Clytia hemisphaericaexon
TCONS_00013155-exon-sc0000162-1510915933:250235..250273TCONS_00013155-exon-sc0000162-1510915933:250235..250273Clytia hemisphaericaexon
TCONS_00013155-exon-sc0000162-1510915933:248267..249184TCONS_00013155-exon-sc0000162-1510915933:248267..249184Clytia hemisphaericaexon
TCONS_00013155-exon-sc0000162-1510915933:246128..246746TCONS_00013155-exon-sc0000162-1510915933:246128..246746Clytia hemisphaericaexon
TCONS_00013155-exon-sc0000162-1491911889:250235..250273TCONS_00013155-exon-sc0000162-1491911889:250235..250273Clytia hemisphaericaexon
TCONS_00013155-exon-sc0000162-1491911889:248267..249184TCONS_00013155-exon-sc0000162-1491911889:248267..249184Clytia hemisphaericaexon
TCONS_00013155-exon-sc0000162-1491911889:246128..246746TCONS_00013155-exon-sc0000162-1491911889:246128..246746Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:246128..250273 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.268167	0.00906327	0	0.228591	0.0756132	1.00307	1.12563	1.10326	0	0	0.468999	0	0.0796793	0	0	2.21565e-08	0	7.13292e-09	0.300033	0.0924586	2.75596	1.34598	1.81915	1.98811	0	0.93703	0.388004	0.24966	0.171439	0.256345
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013155 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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