TCONS_00013158 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013158
Unique NameTCONS_00013158
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length442

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013158 ID=TCONS_00013158|Name=TCONS_00013158|organism=Clytia hemisphaerica|type=transcript|length=442bp
GGTTCTATAGTGTTACTAATAAAATTCACCATCATCATCTTTTATGTTCT
TAGGTCTTCTACACGATTAAAGCAATTTAAACTTTTGCAAACATTCTTTC
CTAGACTAgtacacaaaaacaaacaaagcaTAATCGCCACCGCAATCACT
ccagaaaaactaaatttgatGGTGTCAAATGTGGATTTCAAGATATGACC
ATTAGTTGTAGTCCATCCGAAGAGGTTTTGAATCATGGAATTTGCGGTCA
GGAACAAAGTTATAATGACAGCAGTAGTGAGGAAGCAATTGGACCATCCT
TTTTGTGGAGCAGATGCCATAAATTGTGGATCGTTCAAACAGATCAATAG
ACAGATAGAAAAGAAGGGGAGAAGACAACCATTGAACACCTAAATTAGAT
TCAAAGGTTGACGCACAAATCAGTTGTTGGAGAACGTTTTCA
Run BLAST on NCBI

transcript from alignment at sc0000162:269184..269718-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013158 ID=TCONS_00013158|Name=TCONS_00013158|organism=Clytia hemisphaerica|type=transcript|length=535bp|location=Sequence derived from alignment at sc0000162:269184..269718- (Clytia hemisphaerica)
GGTTCTATAGTGTTACTAATAAAATTCACCATCATCATCTTTTATGTTCT
TAGGTCTTCTACACGATTAAAGCAATTTAAACTTTTGCAAACATTCTTTC
CTAGACTAGTACACAAAAACAAACAAAGCATAATCGCCACCGCAATCACT
CCAGAAAAACTAAATTTGATGGTGTCAAATGTGGATTTCAAGATATGACC
ATTAGTTGTAGTCCATCCGAAGAGGTTTTGAATCATGGAATTTGCGGTCA
GGAACAAAGTTATAATGACAGCAGTAGTGAGGAAGCAATTGGACCATCCT
TTTTGTGGAGCAGATGCCATAAATTGTGGATCGTTCAAACAGATCAATAG
ACAGATAGAAAAGAAGGGGAGAAGACAACCATTGAACACCTAAATTAGAT
TCAAAGGTACTTCAATTAATGAAAAAATCCATGAACATTATATAAACTTC
AGTTGCTTAGTGTAGATAAGATAATTTTCCAGCTTATTTCTTACTTCAGG
TTGACGCACAAATCAGTTGTTGGAGAACGTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007346XLOC_007346Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013158-exon-sc0000162-1575043694:269313..269718TCONS_00013158-exon-sc0000162-1575043694:269313..269718Clytia hemisphaericaexon
TCONS_00013158-exon-sc0000162-1575043694:269184..269219TCONS_00013158-exon-sc0000162-1575043694:269184..269219Clytia hemisphaericaexon
TCONS_00013158-exon-sc0000162-1510915933:269313..269718TCONS_00013158-exon-sc0000162-1510915933:269313..269718Clytia hemisphaericaexon
TCONS_00013158-exon-sc0000162-1510915933:269184..269219TCONS_00013158-exon-sc0000162-1510915933:269184..269219Clytia hemisphaericaexon
TCONS_00013158-exon-sc0000162-1491911889:269313..269718TCONS_00013158-exon-sc0000162-1491911889:269313..269718Clytia hemisphaericaexon
TCONS_00013158-exon-sc0000162-1491911889:269184..269219TCONS_00013158-exon-sc0000162-1491911889:269184..269219Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:269184..269718 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.985637	0.0110133	0.0608369	0.021723	1.21984	1.13583	0.956855	1.19409	0.266139	0.438876	0	0.350553	15.1411	6.28798	9.3845	13.6031	1.27418	1.52327	5.04701	3.61006	0.631259	1.22273	1.04736	0.235413	0.946353	2.32426	0.484882	0.349779	0.659766	1.2312
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013158 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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