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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013162 ID=TCONS_00013162|Name=TCONS_00013162|organism=Clytia hemisphaerica|type=transcript|length=2646bpRun BLAST on NCBI protein sequence of TCONS_00013162-protein >TCONS_00013162-protein ID=TCONS_00013162-protein|Name=TCONS_00013162-protein|organism=Clytia hemisphaerica|type=polypeptide|length=565bp EILLLEHQKSKAKVSLKIMEEFVQTHVHEDVSVVTIRTVTKMFKQGLTIPRun BLAST on NCBI transcript from alignment at sc0000162:272142..284350- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013162 ID=TCONS_00013162|Name=TCONS_00013162|organism=Clytia hemisphaerica|type=transcript|length=12209bp|location=Sequence derived from alignment at sc0000162:272142..284350- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000162:272142..284350- >TCONS_00013162 ID=TCONS_00013162|Name=TCONS_00013162|organism=Clytia hemisphaerica|type=CDS|length=25470bp|location=Sequence derived from alignment at sc0000162:272142..284350- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013162 vs. Swiss-Prot (Human)
Match: SRBD1 (S1 RNA-binding domain-containing protein 1 OS=Homo sapiens GN=SRBD1 PE=1 SV=2) HSP 1 Score: 339.732 bits (870), Expect = 8.198e-101 Identity = 193/533 (36.21%), Postives = 314/533 (58.91%), Query Frame = 2
Query: 116 VTKMFKQGLTIPYIARYQKDRIDGADAKTLRQVEEGMHAYDNLQGRISKVLKSIENL-EVSQGYINQIKAATTLDDVEALYQPYKKGGKGTYAERAKKLGLNDAAQHLL-KGQQVNIEQLVNQEAKGLQSLAEVKKGISHIVAGEIANKNE---IFQKLFQEAYTYV-FVLTKRTKDGVDKNE--KFKDYYDIKRNITNLKEHQILAINRAEKQSIITVKLQIHEAQRNRFIYWIKQTYNCNKN-------NLVNEAIEDGFKRLLEPRFFRKIRSKLKKEAEVKSMNIFSENIRKLLLIAPIREKVL-SIDPGFKNGCKIAVLDKNAKMLTTAVIHPFTQSNKNNQAETVLIELIQKHRIKHIAIGNGTACRETERLVAKLIESNKIAA---KYSIVDESGASIYSITEDASKEFGHLDPNLISAVSIGRRLQDPLLEICKLDPKTIGVGMYQHDVDQKTLSGVLEHSLSDVVNMVGVDVNSCSIHMLKRISGLSTKQAQAIIEYRTKKNGIHNRQELLQIKGIGQISYKNA 1657
+ ++F TIP+I RY+K+ I+ DA +LR+V++ + + ++ ++ I+ ++S+ + + T +++E + PYK G KGT A+RA++LGL AA+ LL K ++++ + + KGL +L +++ G+ HI+A IA + + L Q+ + + L K + V++ + KF Y NI N+ HQILAINR E ++TVK+ I + ++ F W Q ++ ++ ++ D FKRL+ P R+ R+KL +AE +S+ +F N+R+LLL +P+ + L +DPG+K+GCK+A++ +++L T V+ + + + + L+ + IGNGTACRETE A LI N A Y IV E+GASIYS++ +A+KE LDPNL SAVSI RR+QDPL E+ K++PK IGVGMYQHDV Q L L+ + + V+ VGVD+N CS +L+ I+GL+ +A+ IIE+R K NR++L ++KG+G S++
Sbjct: 232 IIRLFNDDNTIPFIIRYRKELINNLDADSLREVQQTLEELRAVAKKVHSTIQKIKKEGKMSECLLKAMLNCKTFEELEHVSAPYKTGSKGTKAQRARQLGLEGAARALLEKPGELSLLSYIRPDVKGLSTLQDIEIGVQHILADMIAKDKDTLDFIRNLCQKRHVCIQSSLAKVSSKKVNEKDVDKFLLYQHFSCNIRNIHHHQILAINRGENLKVLTVKVNISDGVKDEFCRWCIQNRWRPRSFARPELMKILYNSLNDSFKRLIYPLLCREFRAKLTSDAEKESVMMFGRNLRQLLLTSPVPGRTLMGVDPGYKHGCKLAIISPTSQILHTDVV--YLHCGQGFREAEKIKTLLLNFNCSTVVIGNGTACRETEAYFADLIMKNYFAPLDVVYCIVSEAGASIYSVSPEANKEMPGLDPNLRSAVSIARRVQDPLAELVKIEPKHIGVGMYQHDVSQTLLKATLDSVVEECVSFVGVDINICSEVLLRHIAGLNANRAKNIIEWREKNGPFINREQLKKVKGLGPKSFQQC 762 HSP 2 Score: 115.931 bits (289), Expect = 2.878e-26 Identity = 80/239 (33.47%), Postives = 128/239 (53.56%), Query Frame = 1
Query: 1684 GIGQISYKNACGFLRILPDTLQEVIEIDDSESEPNEDVSIGXXXXXXXXXXXXXXXXXGSACQL----EPLDRTIIHPESYDIANKLLKHLKTSADVIGTRKMVELTQNLDPK----RLAKEIGTSHHTMELILTAYKQTEE-SFRKDFSKPVFKSSIININDLKIGTLCDGVVRNVTSFGAFIDIGVNKNALLHV--------SKFCGR---SFGPGDRVRCKVDSLDIEKGRISLLL 2340
G+G S++ GF+RI D ++ S + V++ + ++ + + K K+ +A + PLD+T IHPESYDIA + L + + +G +M + + K ++A+ + T+ HT+++I+ Q E FR DF KP FK SI+ + DL+IGT+ G V N T FG F+DIGV K+ L+ + SK R GPG+RV +V ++DI + RI+L L
Sbjct: 753 GLGPKSFQQCAGFIRINQDYIRTFCSQQTETSGQIQGVAVTSSADVEVTNEKQGKKKSKTAVNVLLKPNPLDQTCIHPESYDIAMRFLSSIGGTLYEVGKPEMQQKINSFLEKEGMEKIAERLQTTVHTLQVIIDGLSQPESFDFRTDFDKPDFKRSIVCLEDLQIGTVLTGKVENATLFGIFVDIGVGKSGLIPIRNVTEAKLSKTKKRRSLGLGPGERVEVQVLNIDIPRSRITLDL 991 The following BLAST results are available for this feature:
BLAST of TCONS_00013162 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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