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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013171 ID=TCONS_00013171|Name=TCONS_00013171|organism=Clytia hemisphaerica|type=transcript|length=6047bpRun BLAST on NCBI transcript from alignment at sc0000162:472705..492369- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013171 ID=TCONS_00013171|Name=TCONS_00013171|organism=Clytia hemisphaerica|type=transcript|length=19665bp|location=Sequence derived from alignment at sc0000162:472705..492369- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00013171 vs. Swiss-Prot (Human)
Match: TSC2 (Tuberin OS=Homo sapiens GN=TSC2 PE=1 SV=2) HSP 1 Score: 266.544 bits (680), Expect = 1.993e-71 Identity = 155/511 (30.33%), Postives = 271/511 (53.03%), Query Frame = 2
Query: 5 SISTILGYYEDRIDPNTVEWSDIFEQILITNLKQETRSGVKVRVLETIKNIYSRYRHRHEDDILSYILHGHVSDMVYDNDKDIRKSVGYLLSYILKHCCADKYPEVLKVVAEFLSYISLG-------KDVTRFNV-MEDISIVVDALINTFESRLFEPSNIYIVGMLEILIKHLNDHFTINITSIAAGKIRRKIFELLLALRSNEYHFLGIKLKENGVKFSTHAIFKPLDSEIFN-NSASRPY-----------------FVDFDFQQAFEGLLKCLKNELDWNVLELVLKSIVKQLEDKNLYVYCQCNMNKLCAVLCTIINDKTFFNKMKNVPTTMTMSELRNLIFPILSTLSTYHSYLVKDRQVELLTSIEFGLQTRSALTCVSCLTVCVLEMQGIMKRILPSMLVKLSQIASSEMMSNAILKFLSTLKEIPSLYSNFVEEQYMSIFAMALPYTDCLKYTRYIVTLAHQVIADWFTRCKLMFRKDFVSIIVAALKSH-------TTEKD 1438
S+ ++ Y I P W + ++ + E+R V+++VL+ + + R +E+++++ ++ +S + D D +RK LL + + C + +L ++ + ++ SL +DV ++ +ED+ V L+ +++L+ + + E+L+ H+ H+ + T A IR + F+ LL LR++ H LG+ K+ V+FS + + ++ E + S P + F LL+CLK E DW VL+LVL + + L K L C++++LC+ LC++++ +++ P + ++L + P+L+ L +YH+YL K +Q E++ +E GL R A CV L++C +EM I+ + LP ++VKL+ I+++ M+ +L+FLSTL +P LY NF EQY S+FA++LPYT+ K+ +YIV LAH VIA WF RC+L FRKDFV I L+S+ T EKD
Sbjct: 422 SLLNLISYRAQSIHPAKDGWIQNLQALMERFFRSESRGAVRIKVLDVLSFVLLINRQFYEEELINSVVISQLSHIPEDKDHQVRKLATQLLVDLAEGCHTHHFNSLLDIIEKVMAR-SLSPPPELEERDVAAYSASLEDVKTAVLGLLVILQTKLYTLPASHATRVYEMLVSHIQLHYKHSYTLPIASSIRLQAFDFLLLLRADSLHRLGLPNKDGVVRFSPYCVCDYMEPERGSEKKTSGPLSPPTGPPGPAPAGPAVRLGSVPYSLLFRVLLQCLKQESDWKVLKLVLGRLPESLRYKVLIFTSPCSVDQLCSALCSMLSGPKTLERLRGAPEGFSRTDLHLAVVPVLTALISYHNYLDKTKQREMVYCLEQGLIHRCASQCVVALSICSVEMPDIIIKALPVLVVKLTHISATASMAVPLLEFLSTLARLPHLYRNFAAEQYASVFAISLPYTNPSKFNQYIVCLAHHVIAMWFIRCRLPFRKDFVPFITKGLRSNVLLSFDDTPEKD 931 HSP 2 Score: 255.758 bits (652), Expect = 3.330e-68 Identity = 127/293 (43.34%), Postives = 189/293 (64.51%), Query Frame = 3
Query: 2676 VNKDSNDNKDSTQTKAENF--WSPNFVFLQLFYSSFGNVFENAPILL-DQTEAMQRTIKILHKIPAFNTHKFGVLYVGQGQENSEIDILENDFGSIRYTNFLVGLGEIISLSNSTED-YYTGGLS-PGEDGKFACVWKDDTTQVIFHVATLMPFKTTDTKCISKKRHIGNDFVTIIYDDSENGYSFGTIKGQFNYAEIVIRPVEYANNVVYVRLKQNSKIICLDS--QTISDSNLAILVRQMAIHTNMALVTEKGGEKTTNAFASNWLQRLRQIKRIRTKVDNEA---NKTLP 3524
V +D+ ++ +T + AE +P+FVFLQL++S F N PILL +++++ +R++++L +IP+++THK VLYVG+GQ NSE+ IL N+ GS RYT FL GLG +I L + D Y GGL GEDG+F W DD Q +FH+ATLMP K D KKRH+GNDFV+I+Y+DS + GTIKGQFN+ +++ P++Y N+V ++ +++ + + S + +SD NL + RQMA+H NMA T+ + S W+ RLR IKR+R ++ EA N +LP
Sbjct: 1475 VERDALKSR-ATASNAEKVPGINPSFVFLQLYHSPFFGDESNKPILLPNESQSFERSVQLLDQIPSYDTHKIAVLYVGEGQSNSELAILSNEHGSYRYTEFLTGLGRLIELKDCQPDKVYLGGLDVCGEDGQFTYCWHDDIMQAVFHIATLMPTKDVDKHRCDKKRHLGNDFVSIVYNDSGEDFKLGTIKGQFNFVHVIVTPLDYECNLVSLQCRKDMEGLVDTSVAKIVSDRNLPFVARQMALHANMASQVHHSRSNPTDIYPSKWIARLRHIKRLRQRICEEAAYSNPSLP 1766 The following BLAST results are available for this feature:
BLAST of TCONS_00013171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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