TCONS_00013180 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013180
Unique NameTCONS_00013180
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length834

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013180 ID=TCONS_00013180|Name=TCONS_00013180|organism=Clytia hemisphaerica|type=transcript|length=834bp
CTGGAGGCTGATTCATCGAATTCTCAATCCAACAAAAAGTGTGATAAATA
TCCAACCATCCGTACTAAATGCACACTACCTATCCACTGCACCAAGAATC
CTTGGATCGCAACCAACTTCCACTGAAGAAATTCAACATCTTCTTTGAAA
TTTCGTTACTGAGGTTGATCAGGAATTTGAGTTTCAACCTGTCACTTATG
ATCAAGTCGTCAAAGAGATAAAGAATCTTCGAAGTGACTGCTCTGCCGGG
TATGACAATCTACCAGTATCACTGATCAAACCTATCGCCGACCATCTAGC
GTCACCACTAACTCACATCATAAACACAGGGATCGCTCAAACCACTTTCC
ATCAGCAATGGAAAATCCGTAAAGTAACACCGATTCCAAAAAATGAACAG
TCCGTCACTCCTGACTAATTCAGACCTGTCACTGTTTTGCCTATCTTATC
AAAACTTTACAAACGTTTAATGGCAAAGCAGATTGTTGAGTACATCGAAA
GAAAGCAGATATATCAACAAACCATGTCTGGTTTCCGCAAGCGTCATTCT
ACCGAACACTCCTAATGAAGATACGAGACGACATCATTGGTGCAATGAAC
AAAAGCGANCAGTACATCGAAAGAAACCAGATATGTCTGGTTTCCGCAAG
CGTTATTCTACCGAGACACTCCTAATGAAGATAAGAGACGACATCATTGA
TGTGATTAACAAAAGCGAAGTCACACTAGCCGCCTTTCTTGATTATTCTA
AAGCCTTCGATACCGTCGATTACAAAACGCTACTGGTAAAACTACGAAAG
ATAGGCTTTTCGGACAGTACTGCCATGCTTATGC
Run BLAST on NCBI

transcript from alignment at sc0000162:167501..168334

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013180 ID=TCONS_00013180|Name=TCONS_00013180|organism=Clytia hemisphaerica|type=transcript|length=834bp|location=Sequence derived from alignment at sc0000162:167501..168334 (Clytia hemisphaerica)
GCATAAGCATGGCAGTACTGTCCGAAAAGCCTATCTTTCGTAGTTTTACC
AGTAGCGTTTTGTAATCGACGGTATCGAAGGCTTTAGAATAATCAAGAAA
GGCGGCTAGTGTGACTTCGCTTTTGTTAATCACATCAATGATGTCGTCTC
TTATCTTCATTAGGAGTGTCTCGGTAGAATAACGCTTGCGGAAACCAGAC
ATATCTGGTTTCTTTCGATGTACTGNTCGCTTTTGTTCATTGCACCAATG
ATGTCGTCTCGTATCTTCATTAGGAGTGTTCGGTAGAATGACGCTTGCGG
AAACCAGACATGGTTTGTTGATATATCTGCTTTCTTTCGATGTACTCAAC
AATCTGCTTTGCCATTAAACGTTTGTAAAGTTTTGATAAGATAGGCAAAA
CAGTGACAGGTCTGAATTAGTCAGGAGTGACGGACTGTTCATTTTTTGGA
ATCGGTGTTACTTTACGGATTTTCCATTGCTGATGGAAAGTGGTTTGAGC
GATCCCTGTGTTTATGATGTGAGTTAGTGGTGACGCTAGATGGTCGGCGA
TAGGTTTGATCAGTGATACTGGTAGATTGTCATACCCGGCAGAGCAGTCA
CTTCGAAGATTCTTTATCTCTTTGACGACTTGATCATAAGTGACAGGTTG
AAACTCAAATTCCTGATCAACCTCAGTAACGAAATTTCAAAGAAGATGTT
GAATTTCTTCAGTGGAAGTTGGTTGCGATCCAAGGATTCTTGGTGCAGTG
GATAGGTAGTGTGCATTTAGTACGGATGGTTGGATATTTATCACACTTTT
TGTTGGATTGAGAATTCGATGAATCAGCCTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007361XLOC_007361Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013180-exon-sc0000162-1491911889:167501..168334TCONS_00013180-exon-sc0000162-1491911889:167501..168334Clytia hemisphaericaexon
TCONS_00013180-exon-sc0000162-1510915933:167501..168334TCONS_00013180-exon-sc0000162-1510915933:167501..168334Clytia hemisphaericaexon
TCONS_00013180-exon-sc0000162-1575043694:167501..168334TCONS_00013180-exon-sc0000162-1575043694:167501..168334Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:167501..168334 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.93177	0.0993239	1.50245	1.01734	0.174849	0.303249	0.363591	0.265298	0.224218	0	0.23632	0.344442	0.351516	0.229641	0.512961	0.394884	0.824027	0.0641242	0.163931	0.598663	0.761685	0.239903	0.373288	0	0.545161	1.002	0.482713	0.33109	0.534784	0.228657
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013180 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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