TCONS_00013200 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013200
Unique NameTCONS_00013200
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1269

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013200 ID=TCONS_00013200|Name=TCONS_00013200|organism=Clytia hemisphaerica|type=transcript|length=1269bp
CCCTTAGCCCACGCGGGACGCACATGTGCGTCCGCGCCTATATACGAGGG
ACGCGTATACGCGTCTTTTATATGTATGGTCATTTAAGCAATGATATTTA
GTNAGAAATTCGTTTAATTTTGTGACCAAATGGTATTGAAACTATTACAG
AACAAAATGTTTCGAATTCTGAAAATGTATTGTTTTCTACCAAAAAAATA
GAGACATATTTACAAATTTGTTGgttgttttgaaattgataTTTACAATT
TAATCGTTTAATTATTTCATAAATATGAAAGATCCCGTAAATTAACAATG
ATGATTGTCAATGATGTTTATTAGGCCAGCGTTTATTAAGCAAGTGAatg
gtacgggtatgtgccacccttaagggtgTCTTTTTGGAACCTGACAGTCC
TTGTAGCGTTAGTCCTTactagtcccgctaagggtccgagggtcgtaACC
GACCACCCCCGTCATGCTATAAATGTAGTACGCCCGGGTTATTAGGTAAA
ACCATCTACACGTGCGCAAAGTTAACAATTCAAAAGTTCGGTCAACAACC
AAATGAGAATATTGCCGTTGACAATTAATATTTCCGAATAATTCAAGAGA
CGAACCAAGCTGGCCACCTAAAAGAACTTCGTAAGAAGTCTTTTGAGGAT
TATGCGACAGTTTGGTTTTTGTCTATGTGGCTGTACCGCAGTAGATGTTA
ATTTTGCGACTTTGGCGGGTTCGATTGTTAAGCGCACTTTTAGATTGTTA
GCCGTAAATACGGTATTATCAAGTCTAGCGAAACGAAGACTGTAGGaaaa
cttgagttttcttcaaacaaaatcaaaatgggCCCATCAGAGTATTGGAA
TTATTCATCGCCTTTTGTAAAGACAGGTGAGGTATCATAAAGGAGATTAA
CTTTCGAAACACANaaacaaaatcaaaatgttcGATCGGTCGAAGCTCCA
ATTTCTCAAGGGCCCATCAGAGTATTGGAATTATTCATCGCCTTTTGTAA
AGACAGGTGAGGTATCATAAGGAGATTAACTTTCGAAacacaaaataatt
ttagaCCTCAAAATTAAGTCTCAAAATGGACCAAAACCGCGTTAATTTGG
GATTTTCAACTCCATTTTCACATATTCTTTTAAACTCTGAAACGCGAAAC
TTTCCATCAATTTCTGAACTGGTTCTTTCATTCCTTCTCAATTATTGTAT
TCTTTtgctttttgaatgttttccaATAGTTTGGATCTTTTAACAAAGAG
GCTTGAAACGAAGTGATCG
Run BLAST on NCBI

transcript from alignment at sc0000163:118077..119402+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013200 ID=TCONS_00013200|Name=TCONS_00013200|organism=Clytia hemisphaerica|type=transcript|length=1326bp|location=Sequence derived from alignment at sc0000163:118077..119402+ (Clytia hemisphaerica)
CCCTTAGCCCACGCGGGACGCACATGTGCGTCCGCGCCTATATACGAGGG
ACGCGTATACGCGTCTTTTATATGTATGGTCATTTAAGCAATGATATTTA
GTNAGAAATTCGTTTAATTTTGTGACCAAATGGTATTGAAACTATTACAG
AACAAAATGTTTCGAATTCTGAAAATGTATTGTTTTCTACCAAAAAAATA
GAGACATATTTACAAATTTGTTGgttgttttgaaattgataTTTACAATT
TAATCGTTTAATTATTTCATAAATATGAAAGATCCCGTAAATTAACAATG
ATGATTGTCAATGATGTTTATTAGGCCNAATATGAAAGATCCCGTAAATT
AACAATGATGATTGTCAATGGTGTTTATTAGGCCAGCGTTTATTAAGCAA
GTGAatggtacgggtatgtgccacccttaagggtgTCTTTTTGGAACCTG
ACAGTCCTTGTAGCGTTAGTCCTTactagtcccgctaagggtccgagggt
cgtaACCGACCACCCCCGTCATGCTATAAATGTAGTACGCCCGGGTTATT
AGGTAAAACCATCTACACGTGCGCAAAGTTAACAATTCAAAAGTTCGGTC
AACAACCAAATGAGAATATTGCCGTTGACAATTAATATTTCCGAATAATT
CAAGAGACGAACCAAGCTGGCCACCTAAAAGAACTTCGTAAGAAGTCTTT
TGAGGATTATGCGACAGTTTGGTTTTTGTCTATGTGGCTGTACCGCAGTA
GATGTTAATTTTGCGACTTTGGCGGGTTCGATTGTTAAGCGCACTTTTAG
ATTGTTAGCCGTAAATACGGTATTATCAAGTCTAGCGAAACGAAGACTGT
AGGaaaacttgagttttcttcaaacaaaatcaaaatgggCCCATCAGAGT
ATTGGAATTATTCATCGCCTTTTGTAAAGACAGGTGAGGTATCATAAAGG
AGATTAACTTTCGAAACACANaaacaaaatcaaaatgttcGATCGGTCGA
AGCTCCAATTTCTCAAGGGCCCATCAGAGTATTGGAATTATTCATCGCCT
TTTGTAAAGACAGGTGAGGTATCATAAGGAGATTAACTTTCGAAacacaa
aataattttagaCCTCAAAATTAAGTCTCAAAATGGACCAAAACCGCGTT
AATTTGGGATTTTCAACTCCATTTTCACATATTCTTTTAAACTCTGAAAC
GCGAAACTTTCCATCAATTTCTGAACTGGTTCTTTCATTCCTTCTCAATT
ATTGTATTCTTTtgctttttgaatgttttccaATAGTTTGGATCTTTTAA
CAAAGAGGCTTGAAACGAAGTGATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007381XLOC_007381Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013200-exon-sc0000163-1491911889:118077..118400TCONS_00013200-exon-sc0000163-1491911889:118077..118400Clytia hemisphaericaexon
TCONS_00013200-exon-sc0000163-1510915933:118077..118400TCONS_00013200-exon-sc0000163-1510915933:118077..118400Clytia hemisphaericaexon
TCONS_00013200-exon-sc0000163-1575043694:118077..118400TCONS_00013200-exon-sc0000163-1575043694:118077..118400Clytia hemisphaericaexon
TCONS_00013200-exon-sc0000163-1491911889:118458..119402TCONS_00013200-exon-sc0000163-1491911889:118458..119402Clytia hemisphaericaexon
TCONS_00013200-exon-sc0000163-1510915933:118458..119402TCONS_00013200-exon-sc0000163-1510915933:118458..119402Clytia hemisphaericaexon
TCONS_00013200-exon-sc0000163-1575043694:118458..119402TCONS_00013200-exon-sc0000163-1575043694:118458..119402Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000163supercontigsc0000163:118077..119402 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.71564	0.994811	0.483022	0.840682	0.771925	0.777864	3.87531	2.82061	1.39472	1.17506	1.60504	1.04679	1.06567	1.79952	0.7026	0.265725	0.61207	0.56452	1.3117	1.34779	0.905484	0.906594	1.07142	0.930616	3.81619	3.10854	0.353975	0.74071	0.220095	0.0483001
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top