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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013204 ID=TCONS_00013204|Name=TCONS_00013204|organism=Clytia hemisphaerica|type=transcript|length=5937bpRun BLAST on NCBI transcript from alignment at sc0000163:284676..306772+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013204 ID=TCONS_00013204|Name=TCONS_00013204|organism=Clytia hemisphaerica|type=transcript|length=22097bp|location=Sequence derived from alignment at sc0000163:284676..306772+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00013204 vs. Swiss-Prot (Human)
Match: ADCY3 (Adenylate cyclase type 3 OS=Homo sapiens GN=ADCY3 PE=1 SV=3) HSP 1 Score: 342.813 bits (878), Expect = 6.190e-97 Identity = 223/712 (31.32%), Postives = 370/712 (51.97%), Query Frame = 1
Query: 343 ASVSLSGFIDLITSTFDSPALESIYQNYFSKRRRTSIRFLLSLVVLYNLVQMIITAIDYSKDKTQTHXXXXXXXXXXXXXXXXXXXXLFS-RPTLRSTNYTIQSGXXXXXXXXXXXXXXVASTKPLLASDSVGLFIFFIYVTYAMITFRLYASIIVSLIAMITHCIIVSATLDHVT------TNITKQIISNVLLFLAVNVIGVMNYLVTDVNQRRSFLDTREAIQVKMSFEKEEKNQRRLLQSILPATVANKIIEDMRTDGTILNESEGFKKIYIKSYDKCSILFADIVGFTNYSSKVTAEKLIYMLNELFANFDKLAKRNLCQRIKILGDCYYCISGFDEGTNGDSNVDKLTHAENSVEMGLAMVKHIKKVREDINVSIDMRVGIHSGHVLAGILGQKKWQFDVWSNDVTLANQMESGGIPGRVHITEATYQLIKDSYEVEDGKGGERNQYLKENKVQTYLITEAKSNFKEKRNTGTXXXXXXXXXXXXXXETDQENCGGGTLARISSAFAKASEKRKSEVHHHIDSNEMSDPDVTAVVADELTTNTAAYNFK-QNAHQNTDDINSEENRINAMLAEELAHRNS-ELTDAAN--FITLRFKKNDIEVEYYREKKMFCLISLAGPLAITLFSFLVELTVYDRRTVNYVTFASSMFILLTFWLITWIGRYSNVIPPTLTKLSNLFHYFAPVRNIIAFVSVLVVIFAEVIDII 2445
+ + L F+ L TF +LE++YQ YF ++R ++ L+ L++ +++ A+ +S DK + V I + I+ L L R T R Y + +I + + ASD+VG +FF++ + + L +I+S+++ + H +++ T+ + ++I++NV L+L +G+M+Y + D R++FL+ R++++VKM+ E++ + Q L+ SILP VA+++++DM+ D + ++ + F +Y+ ++ SILFADIVGFT SS +A++L+ +LNELFA FDKLA + RIKILGDCYYCI G D D HA S+ MGLAMV+ I VRE +DMRVG+H+G VL G+LGQK+WQ+DVWS DVT+AN+ME+GGIPGRVHI+++T +K ++VE G GG R YL+E ++TYLI +K E + T T + + G A S+ E ++ H + P+ AD + + Q+ D + +E+ +N +L E L R S ++ N +++RF ++E Y EK+ + + + L + LVE+ + NYVTF +LL + + + P L S RN A +++ +++ A V+D++
Sbjct: 45 SCLCLPRFMRL---TFVPESLENLYQTYFKRQRHETLLVLVVFAALFDCYVVVMCAVVFSSDKLASLAVAGIGLVLDIILFVLCKKGLLPDRVTRRVLPYVLW----LLITAQIFSYLGLNFARAHAASDTVGWQVFFVFSFFITLPLSLSPIVIISVVSCVVHTLVLGVTVAQQQQEELKGMQLLREILANVFLYLCAIAVGIMSYYMADRKHRKAFLEARQSLEVKMNLEEQSQQQENLMLSILPKHVADEMLKDMKKDESQKDQQQ-FNTMYMYRHENVSILFADIVGFTQLSSACSAQELVKLLNELFARFDKLAAKYHQLRIKILGDCYYCICGLP-----DYRED---HAVCSILMGLAMVEAISYVREKTKTGVDMRVGVHTGTVLGGVLGQKRWQYDVWSTDVTVANKMEAGGIPGRVHISQSTMDCLKGEFDVEPGDGGSRCDYLEEKGIETYLIIASKP---EVKKTATQNGL------------NGSALPNGAPASSKSSSPALIETKEPNGSAHSSGSTSEKPEEQDAQADNPSFPNPRRRLRLQDLADRVVDASEDEHELNQLLNEALLERESAQVVKKRNTFLLSMRFMDPEMETRYSVEKEKQSGAAFSCSCVVLLCTALVEILIDPWLMTNYVTFMVGEILLLILTICSLAAIFPRAFPKKLVAFSTWIDRTRWARNTWAMLAIFILVMANVVDML 725 HSP 2 Score: 305.449 bits (781), Expect = 9.575e-85 Identity = 151/269 (56.13%), Postives = 189/269 (70.26%), Query Frame = 1
Query: 2737 FHSRQSEANARVLMLWKKQALDNKQNVESLRHRNEALMQNILPIHVIEHFLQVDNKDETELYSKSYNSVGVIFASIPNFSQFYTEESYNNGGIECMRVLNEIISDFDEVLRDKKFSLIEKIKTVNSCYMAASGLVHH-------ESNSPDIIRGDPWQHLVDLTDFALALRQKLDAMNAESFNNFELRVGIANGPVVAGVIGAKKPHYDIWGNTVNIASRMESTGKSGTIQVLGDTYEVLKDRGFEFEQRGYVPVKGKGNLLTYILISR 3522
+ SR E AR L LWK + D K+ V +R NEAL+ N+LP HV HFL +DE ELYS++Y+ +GV+FAS+PNF+ FYTEES NNGGIEC+R LNEIISDFD +L + KF +I KIKT+ S YMAASG+ SN D + WQHL DL DFALA++ L +N +SFNNF LR+G+ G V+AGVIGA+KPHYDIWGNTVN+ASRMESTG G IQV+ +T +L++ GF F +RG + VKGKG LLT+ L R
Sbjct: 855 YFSRHVEKLARTLFLWKIEVHDQKERVYEMRRWNEALVTNMLPEHVARHFLGSKKRDE-ELYSQTYDEIGVMFASLPNFADFYTEESINNGGIECLRFLNEIISDFDSLLDNPKFRVITKIKTIGSTYMAASGVTPDVNTNGFASSNKEDKSERERWQHLADLADFALAMKDTLTNINNQSFNNFMLRIGMNKGGVLAGVIGARKPHYDIWGNTVNVASRMESTGVMGNIQVVEETQVILREYGFRFVRRGPIFVKGKGELLTFFLKGR 1122 HSP 3 Score: 102.449 bits (254), Expect = 1.786e-21 Identity = 71/232 (30.60%), Postives = 116/232 (50.00%), Query Frame = 1
Query: 2767 RVLMLWKKQALDNKQNVESLRHRNEALMQNILPIHVIEHFLQVDNKDETE--------LYSKSYNSVGVIFASIPNFSQFYTEESYNNGGIECMRVLNEIISDFDEVLRDKKFSLIEKIKTVNSCYMAASGLVHHESNSPDIIRGDPWQHLVDLTDFALALRQKLDAMNAESFNNFELRVGIANGPVVAGVIGAKKPHYDIWGNTVNIASRMESTGKSGTIQVLGDTYEVLK 3438
R L +Q+L+ K N+E + E LM +ILP HV + L+ KDE++ +Y + +V ++FA I F+Q + S E +++LNE+ + FD+ L K L +IK + CY GL PD R D H V LA+ + + + ++ ++RVG+ G V+ GV+G K+ YD+W V +A++ME+ G G + + T + LK
Sbjct: 252 RKAFLEARQSLEVKMNLEEQSQQQENLMLSILPKHVADEMLKDMKKDESQKDQQQFNTMYMYRHENVSILFADIVGFTQLSSACSAQ----ELVKLLNELFARFDK-LAAKYHQL--RIKILGDCYYCICGL-------PDY-RED---HAVCSILMGLAMVEAISYVREKTKTGVDMRVGVHTGTVLGGVLGQKRWQYDVWSTDVTVANKMEAGGIPGRVHISQSTMDCLK 465 HSP 4 Score: 88.1965 bits (217), Expect = 3.530e-17 Identity = 55/215 (25.58%), Postives = 108/215 (50.23%), Query Frame = 1
Query: 1042 LLQSILPATVANKIIEDMRTDGTILNESEGFKKIYIKSYDKCSILFADIVGFTNYSSKVTAE----KLIYMLNELFANFDKL---AKRNLCQRIKILGDCYYCISGF--DEGTNG--------DSNVDKLTHAENSVEMGLAMVKHIKKVREDINVSIDMRVGIHSGHVLAGILGQKKWQFDVWSNDVTLANQMESGGIPGRVHITEATYQLIKD 1635
L+ ++LP VA + + D +++Y ++YD+ ++FA + F ++ ++ + + + LNE+ ++FD L K + +IK +G Y SG D TNG S ++ H + + LAM + + + +R+G++ G VLAG++G +K +D+W N V +A++MES G+ G + + E T ++++
Sbjct: 891 LVTNMLPEHVARHFLGSKKRD----------EELYSQTYDEIGVMFASLPNFADFYTEESINNGGIECLRFLNEIISDFDSLLDNPKFRVITKIKTIGSTYMAASGVTPDVNTNGFASSNKEDKSERERWQHLADLADFALAMKDTLTNINNQSFNNFMLRIGMNKGGVLAGVIGARKPHYDIWGNTVNVASRMESTGVMGNIQVVEETQVILRE 1095 The following BLAST results are available for this feature:
BLAST of TCONS_00013204 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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