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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013205 ID=TCONS_00013205|Name=TCONS_00013205|organism=Clytia hemisphaerica|type=transcript|length=747bp AAGTGAAGTGTCGTTCACACGGGATTGTGTTTTTGTTTACAGtgaattca agatggcggcagTGGAAGCAAAAAAAGCTTTCGTTTTCGCCTCATTTCTT TTTTTCGAGATAAATTTGGTTTTTGGagcaacaaaagaaaagaaagatct TCAAATCATCATAGAGGAGAAACCAAGTGAATGTGAAGACTTTGCAAGAC CTGGTGATGTCGTTCATGTCCATTATACTGGTATGCTTACAGATGGTCAT ATTTTTGACACATCCATGAGAGAAAATCGGttaccatttaaatttcaaat ggggTCTGGAATGGTTATCAAAGGATGGGAACGTGGTTTGCATGGAATGT GCCCTGGAGAGAAAAGGAAGTTGGTTATTCCACCTCATTTGGGATATGGA AAAGATGGCATCATGGGAGTTGTTCCTCCTGAAGCAACATTACTTTTCCA AGTTCAATTGGTGGGTTTAGAACGCGAAACAATTGGCAGTCAAATGGAAA AATTCTTAATGTTTGCGATTTGGCCGGTTAGTTTTCTTATGGTTTTGTAC TATTTGTATCGTAAAATCACCACAAGTGAATCTGAACTTGATCGTAAAGC TGATAAACGAATGAACAAAAAGAAACGATAATTTTCTTTAATTCTTAAAG TCTTAATTTTGTTCAAGAATTAGTTTTTAGAAAGCATTAACTCACGTTAA ATTTGTAAGATTTTTAACCATCTAATCAATCTAGTAGTGTAACAGGg Run BLAST on NCBI transcript from alignment at sc0000163:320172..332051+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013205 ID=TCONS_00013205|Name=TCONS_00013205|organism=Clytia hemisphaerica|type=transcript|length=11880bp|location=Sequence derived from alignment at sc0000163:320172..332051+ (Clytia hemisphaerica) AAGTGAAGTGTCGTTCACACGGGATTGTGTTTTTGTTTACAGtgaattca
agatggcggcagTGGAAGCAAAAAAAGCTTTCGTTTTCGCCTCATTTCTT
TTTTTCGAGATAAATTTGGTTTTTGGagcaacaaaagaaaagaaagatct
TCAAATCATCATAGAGGTATACTCATTTTcagatttgaaaatattcactT
GTGCTTTGGATCAGTCTCTGCCTAAGACGActgcaaaaataaaatacatt
ttgttgaaattttgctgctttgttTTGATATGATTGTGGATTGAcagtct
gggaaatcctctcaattgcacgcttatgttccgagggcgtaagcgggcaa
ttgcatggttataatttacgcccgctcctgcctggttgaaattgcttagg
gatttcaaggggttcagaattctctaattcgggcgaaggcatggttttat
ataacgggcaatccatttttacggaatcttcttctacgataaattttgag
taaaactgccctaggcttttgaaattcaacagagctttcggaaggaattg
cgtgtcaaaaatataggaaaagcaaaagccgtcacccgtcaatcttgctt
aacgcttaccgcccgtttcagaacaatttcgataagcgtgtataaaaatt
ctgccattttgataaaccgtgcaattgcgcgcttacggcgCGCTTTGTTT
tgataagcgtgcaattgagaggatttcccagactgattGATCAGGCATTT
GATGGTTATGCAAGATTCCCTCCACTGTTGCAAGTTACCCAAGTTTACTT
TAAACTAGAAATACTAGATTACTAGAACTAGAAAAACCACGACTTCAGTT
TCTTTATCAGCCCTTGCATTTAACAGCCgtgcataattttttaaatatgc
acgatacagtaattatgcatgctgtatcattgtttttatgctggagtaca
taattattcaacacggctgcctctttaaaaaaaggtctataataaCATGA
TTGAATCACAAAAATATGAAACGataccgtgaagttgggtaacttgcatc
agtgcacagtggagggaaacttgaatagccatcaaatgaatgaccaatca
aagcagaaaaatttcaaaacaaatgaatgcagctccgctcgcagctctac
tttACCATTAACGTAGTCGTCTAAAAAAacggctattcttttttagaatt
aaccttacaatctagtttttatatttataaaaactagattgctgacgtgt
ggaaaggaatgtcaGCGTGACTGATCcctttgtttcgataataacatcaa
agcgggaactaattttcttctcgtttctttctttcctttttctttctcat
aaatTCAAGCTTTCCCTCGCACTctccaagcgtggttagctcaagcggtt
agagcgtctgtctcataagcatgggtttccgagttcgatcccactgggtg
tcaaatttttcaattcttcaaatttctttttttaattctctttctattat
aatgaaggtcaatcaaacaagtaactagcatatattacctccgctctctg
tgtaaggtttagataagctattatagcatcacttaataagaactttttta
agtttttttttcttatcttttttttaccacaagtgattattcaaggctga
gatatagaagaacaggtataggcgtttgcgcctgtgtttggtgactgaca
gtttcagtttcagtttcactactttcactttcactttcagccagcgagtg
agcgagcgattctttgtaagagaatcatcaaataacttctttcagaatca
ttcttgttttatactttaaagacagaatgataattgatttccgggtcaaa
atgtttgacacttgatccaatcgtttgcttatctttcttgcgttgtcgtc
atttgaatttcagtattcaatgcttataaaatacggttgttataatataa
gggtattaaactcctcactaagagggaacagatcatagattcgaattgaa
cacgtaattactaatagcaattaaTATTACATAATGCGTTGATATTTCTT
CACTTTCATGAAATgtgattcaaaattaaagtgatgcatagctgtcaact
ctcccgcattgaGCGGGAGACTCCCGCATGTCAACGCTTTCTCCCGCGTG
AAGAAAATTCTGCtaaatctcccgcatttttgggattttctcccgcatct
cccgcatttccaaaaattttccgattttggaaaaaccaaacaGCAAAATT
TCTGGATTTTGCAAGATCGGAACGAAAAATTCTCCAATTTCccgaaaaaa
tttccaataaaatcgaattttacgagaaaatttccccgatttcccgattt
cccgattttgaaaaatcggattatcggggaaaaattttcCGACTTGGAGC
TCTCCTGCATTTTTGTGAGgcaaagttgacagctatggTGATgagcacaa
aaacaaaatcaagaattggaNTTCCCATCCAATTTCTCTTTCgtttccca
tcacgccatcttttgctatatttttctaatgtggttgttttgatttacag
ccgccatctttatacCATAACAACAAAGCTTATTAGCAGGTGTTCATGCG
TGAGCGCTTTACACGCTATCATTAAGATTTTAGGaataacaaaagaacaa
aaagtgtcaattcaaaaatttttttttggctgaatgggggtacctaactc
aaagcaatttctcaaggggacctaaattgctaggggcaccatgctcaatg
ggggcacctgaaaagtgggctgaaaccatgacacgtaattactaatagca
attaacattacataacgcgtcgatatctcttcactttcatgaaatgttat
tcaaaattaaagtgatgagcacaaaaacaaaatcaagaattggaaaattt
gtCTCCCAGCgggatcgaactcggaaacccatgcttatgagacaggcgct
ctaaccgcttgagctaaccacgcttggagAGTGTGAGGGAAAGCTTGAat
ttatgagaaagaaaaaggaaagaaagaaacttagttcttgatgttattat
cgaaacaaaaggatcagtcacaatataaaaactagattgtaaggttgatt
ctaaaaaagaatagccgtttttttagacgactacgttcgtttttgttttg
atttaactttgtattttaatgaccaggccaggcccaattgatagtttggt
tcATGTCCTCCGACCAACTCTACCACTAAGTATTTGGGAAAAAATACTTC
ATTTTGAGTTGGAAAAATCAAATCCTTCTTTCCTTCTTTTCATGTGAGCG
TCAATTTCagcgtttttttctttataaacaacaACCACTTCGCgctcaaa
aaggaaaaaaataaggcACAGCTTACACCATTGTGAGCGAGCGGCAAAAA
TATCCCAGTGTAATCtatacttaaaaacaaaaattaagcaCCTAAAAGCA
GAGAGTTGTGGCTGTATTCCTTATAAGAACACGCAGCGAATGNCTTACAC
CATTGTGAGCGAGCGGCAAAAATATCCCAGTGTAATCTatacttaaaaaa
caaaaattaagcaCCTAAAAGCAGAGAGTTGTGGCTGTATTCCTCAATCT
GGATGCGTAGAAGTGATTTTGTGATCGTGGTGCGTACCTTTGTGGATCCA
GGGTTCAGGCTTTTTCTTTACATTCGCGGTTGGAATCCAGGATTGTGCGA
TTGCTTGAAGAATGaaggatttcaaaaattgaggttttggtgggaaaaat
taaaaaaaggttcAAATTTTAGCTACAGTACCGACCGACCATTTTTTTAA
AGCTTCTAGGACacaaaccaaacaatcaattgggcctggccccagctagg
tcattcatttgagggcaaGGCATGTACTAGCCTCCccctgatgcaagtta
cccgatctcacggtactgTTTTAAAAAGAACTTAGGATAGGTAAGGCTTA
AAAACCCAAAGTAGGACTTTCCTAACCAAACAGGCAAGTACTGAGGGAGC
GATATGAAACAGAAGgaaaaagaaacaattttacTGTTAACTACAATTTT
TTGAATTGATTGAAAGTTACCGGGCTTTCAAAGTGTGTGAATATGGATGA
TGACTACCATGGGCTAAATCTTTGTGCTAATTTTGGTTTTCCCCCGTCTT
CTCCCCTCctcgaaaatgaagaaaaagaaatctgTGGCATGGAATCATTG
TTTGTAATACATATATCTCAACACTTGAGCTATTTTATTGGATTATCACA
CAATACATTTTAAGTACATCTTCGtgattttatctttattttactTTAAG
GAGAAACCAAGTGAATGTGAAGACTTTGCAAGACCTGGTGATGTCGTTCA
TGTCCATTATACTGTAAGAGTTAAGAAAAccttaagagccagttttttta
agaatggggcagtttggggcagttccaatagtttgaaacttagatttttt
tcatttttggatatgttgttaagtacaatgaactgNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNCTCAAATCTTCAAAGGTGAACTTTACCAAcccc
ataaaacaattttgccaTCAACCTTTCTGCCCTTAAATACTTAGAGATAA
GtccaaaagtacaaaatattcTTAAACCTTTTCTTCTCTTTGGATAATTT
GAACTTTGAGCTCATTAACTGCATTTAAGAGCAAATAGGCTGatagcaaa
attgttttatggggttggtaaagttcagctttgaagatttgagagtttag
aagcacattttgacagacttgatccttaaatggtagatcaggaggtaaag
atcttgatgaatgTTTGTACTATCCCCATGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNATCTTTAGAagcacattttgacagacttga
tccttaaatggtagatcaggaggtaaagatcttgatgaatgtttgtacta
tccccatgaaacttttcaaaaaccaagattttattatctgagtgggctca
ttttctgttcaatcttgagcaaaaattgttgttttgagcaacattgtcaa
gatttttaggattgtagagttaaaactgactttgagctagccctcttctt
taaaagaaaagaaaaggttccaacttctgataaattcttgaactatctat
aggatgctttcacaaaatcaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttt
actcagttcattgtacttaacaacatatccaaaaatgaaaaaaatctaag
tttcaaactattggacctgccccgctcttaaaaaaactggctcttaaagA
CGCATAAACATCTgagatttttcttaaatcaccCCCCCctcttcttaaca
gaaaaaaaacCTTGCCTCGAAGGTCCTCCAGTAAACCCAGGTTTCATTTT
CGCAATTCATGCAATCACAAATCAGCTAGACTTATTAAGATTCGCGGTAT
TTATGCAAACCTTTGAGCGTTCTTTAGGTTTTATATTTCTCACAATTTGA
AATTGCATTATCTATCTAACAGCATACAACTATTCTTTCAGAGTTTTATT
GAGCTTAATTATCATCTTGAGTTTAATATTTCTTCTGTAGGGTATGCTTA
CAGATGGTCATATTTTTGACACATCCATGAGAGAAAATCGGttaccattt
aaatttcaaatggggTCTGGAATGGTTATCAAAGGATGGGAACGTGGTTT
GCATGGAATGTGCCCTGGgtaagtgacgtcatttttgattttctacgtgc
agtaccgtaagttggtctaatatcgacatccctcgtctaaatcCGACACC
CTTCTATAGAGACAGGAATAACATTAAAGTCTGAATcaatgattgaaaaa
ggattattcctcccTGACcattaagcaaagaaaaatagttttgacctttc
tatcaatttcagctgaagggtgtcgaaattagctgagggatgtcgaaatt
agaccaAGATACGGTATCGGATTGGAGGAGGTTTCCAAATTAGCGATAGA
GAGTCTTTATTTCCCCATAAGGATTATGGCTAAGATAAAAACTCTctatc
ataaattttgaaactcttTTTTAAATCCGCCACTGCCCAGTCTTTTTTAA
TTGTAGAAACTATACTGATATGGAgttaatgggctcttccagaaaaaatc
ggTTCATGGAGGTGGAGGAGATGTTGTTCACGGGTATTGAAAGAGGTGTG
AAAACCGTCATGTCCAAACTCGCAGTGTCCAGGCGGGGGTCAATTTAATG
AGACGTTGCCAGGGgataaaaaatcgaaatttacaGGGGTAGATCATTAA
AAAACAACATATATCCTCCATCCTCCACTCTACCATGAATGGatattacc
ttaagtggattagtTCTGGcgtgaatttaatttggcgattggccaaaata
gaattttggcggggattaaatttggcgatatatcaattttgtaaaattta
gcggggatttaatttgacgaattggaaattttgagaaatttaaaatatac
ttttcttaaaatttgtcaaattcgccaaatttaatatccgccaaaattaa
tccacttaaggtaattaCGAGAACCTAATCTTATCATCATTTCGTTTCTG
TAGAGAGAAAAGGAAGTTGGTTATTCCACCTCATTTGGGATATGGAAAAG
ATGGCATCATGGGAGTTGTTCCTCGTAAGTTATTTTGCATTTGCATTTGA
GCAAAAGATGATTTGATTTGCACTTTTACTTTTGTATTCAGTTTaggctc
tctaattcgatgatTAGACTATTTGATctgttctattattcgataatagT
GAAAGTCaacgtcaacaagaaactctcgtaATTGATACGTTTTCTTATTC
GATTAAAATGCTATTCAccttaaaaaattgaattagagaACGTTAACATT
ATCTATTAACCCTTAAAGCGTAAGGAGACTAGCCAAGAGTTTACCAGGTA
GAAATGCTGTCAAAATTCTTTGTCTATGCCTACGAGAAAAGTCAATGTAA
CCAATTCTGACATTTGACATTCATTTCTACTCGGTAAAATCGATATAACA
TCTTTAGACATTGGCTTAATTCTTGCTGGTTAATCTCTAACCCAGCCTCC
TAACGCTTTAATAAAGATTGTTAGGTGTGCTCTTATTAGGTTTACGATAC
TATTTTGATGATTAAGCTACTATAAACATGAAAGTTAATTATAAATTATC
aggttttggaaaaaattggaattttggGTAGTGTACTTtgtaaaagaaat
taatttgCAAAATTGATTTGGCGAACCAGTATTATTCAACCTAATTATCC
GTCCATGTtttattttgtgtttgttttggtgaaaatcgttgttgattttt
gaaagttctGGCACGCCATTCATTTTGGCAGTGATAATGTTTTATGTGCT
GAATCATTAATTGAATTCGAaattatgtttttgtttgtttttcatcGGTT
GACACGCGACCACTTGGCTGATTCACTTCTTTATAAGTACCCACTTTAGA
GAGGCTTTAATAAGCTGGCAACAAACTTTGAAATATAAATGTATCTCTGT
AATAAAGCAAAAATGATTAAACTTTCTTGAAATATCTGTATAATTTCATT
GGGAATTACGATTCATATAAACCATACTCAAATTATTGCCTTATTTTTGA
GTACCTACTTTAGAGAGGTCCTAATAAGCTggcaacaaaatttgaaataa
tgtaTCTCTTTAATAAAGTAAAAACGATTAAACTTTCTAAAATTTCTCCT
GTAATTTCATTGGGAATTACGATTCATATAAACCATACTCCAATTATTGC
CTTATTCTTGAGTACCCACTTTAGAGAGGTCCTAATAAGCTggcaacaaa
atttgaaataatgtaTCTCTGTAATAAAGCAAAAATGATTAAACATTCTT
GAAATATCTGTGTAATATCATTGGGAATTACGATTCATATAAACCATACT
CCAATTATTCCATTATTTTTGAGACTTTTAGAGGTATTCTAAttattaaa
atataaattttgaaataccgTATCTCTGTAATAAAGCAAAAACGATTAAA
CTTTCTAAAATTTCTCCTGTAATTTCATTGTGAATTACAATTCATATAAA
CCGTACTCCAATTATTGCCTTATTTTTGAGTACCTACTTTAGAGAGGTCC
TAATAAGCTggcaacaaaatttgaaataatttatctCTGTAATAAAGCAA
AAACGATTAAACTTTCTAAAATATCTCCTGTAATTTCATTGGGAATTACG
ATTCATATAAACCATACTCCAATTATTGCATTATTTTTGAGACTTTTAAA
GGTATTCTAATTattaaaacataaattttgagatACTGTATCTTTGTATT
AAAAAGATGTGCTAATCCAATTTAAACCCAAAATAAATGTAatgtacatt
tttttcaaaagaatatgACTAAAAAAGATCGTTTTCATACTTTTAAGATA
TAGGGGAAGCACGTAGGCTCAAACAAAACTATATTATGTAAATTAACCAT
TACTTTAACACACTTATGTTAACCCTTCTTAATTTTAAAAGTCTACGTAA
ACGCAACGGCCAGAACTAAGgttaagtaatttttttttgactgggTACTT
CCAGTACAGAAGTGAGTTCGGTCGCCGCATTATTGGATGGCAccgataga
tgtttttttgttaaattatctaatttccgccattatggaagcaaacgttc
aaTTTGCGCAAGagtacagattcgaacgttttgcttccataatggtggaa
attaaATAACTTAAACTTAACAGAAGTAACTTGACAAAACAGAAGAATGA
AATTACTATAGAGTTATTTCGTTCTACCATCGTGGTTGACGTTTCCCTGG
AATGGgccttaaagtttttttaaacttaTATACATAAtatgaatattttc
tttaacaATAGCTGAAGCAACATTACTTTTCCAAGTTCAATTGGTGGGTT
TAGAACGCGAAACAATTGGCAGTCAAATGGAAAAATTCTTAATGTTTGCG
ATTTGGCCGGTTAGTTTTCTTATGGTTTTGTACTATTTGTATCGTAAAAT
CACCACAAGTGAATCTGAACTTGATCGTAAAGCTGATAAACGAATGAACA
AAAAGAAACGATAATTTTCTTTAATTCTTAAAGTCTTAATTTTGTTCAAG
AATTAGTTTTTAGAAAGCATTAACTCACGTTAAATTTGTAAGATTTTTAA
CCATCTAATCAATCTAGTAGTGTAACAGGg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00013205-exon-sc0000163-1491911889:320172..320337 | TCONS_00013205-exon-sc0000163-1491911889:320172..320337 | Clytia hemisphaerica | exon |
TCONS_00013205-exon-sc0000163-1510915933:320172..320337 | TCONS_00013205-exon-sc0000163-1510915933:320172..320337 | Clytia hemisphaerica | exon |
TCONS_00013205-exon-sc0000163-1575043694:320172..320337 | TCONS_00013205-exon-sc0000163-1575043694:320172..320337 | Clytia hemisphaerica | exon |
TCONS_00013205-exon-sc0000163-1491911889:324472..324534 | TCONS_00013205-exon-sc0000163-1491911889:324472..324534 | Clytia hemisphaerica | exon |
TCONS_00013205-exon-sc0000163-1510915933:324472..324534 | TCONS_00013205-exon-sc0000163-1510915933:324472..324534 | Clytia hemisphaerica | exon |
TCONS_00013205-exon-sc0000163-1575043694:324472..324534 | TCONS_00013205-exon-sc0000163-1575043694:324472..324534 | Clytia hemisphaerica | exon |
TCONS_00013205-exon-sc0000163-1491911889:328412..328539 | TCONS_00013205-exon-sc0000163-1491911889:328412..328539 | Clytia hemisphaerica | exon |
TCONS_00013205-exon-sc0000163-1510915933:328412..328539 | TCONS_00013205-exon-sc0000163-1510915933:328412..328539 | Clytia hemisphaerica | exon |
TCONS_00013205-exon-sc0000163-1575043694:328412..328539 | TCONS_00013205-exon-sc0000163-1575043694:328412..328539 | Clytia hemisphaerica | exon |
TCONS_00013205-exon-sc0000163-1491911889:329425..329495 | TCONS_00013205-exon-sc0000163-1491911889:329425..329495 | Clytia hemisphaerica | exon |
TCONS_00013205-exon-sc0000163-1510915933:329425..329495 | TCONS_00013205-exon-sc0000163-1510915933:329425..329495 | Clytia hemisphaerica | exon |
TCONS_00013205-exon-sc0000163-1575043694:329425..329495 | TCONS_00013205-exon-sc0000163-1575043694:329425..329495 | Clytia hemisphaerica | exon |
TCONS_00013205-exon-sc0000163-1491911889:331733..332051 | TCONS_00013205-exon-sc0000163-1491911889:331733..332051 | Clytia hemisphaerica | exon |
TCONS_00013205-exon-sc0000163-1510915933:331733..332051 | TCONS_00013205-exon-sc0000163-1510915933:331733..332051 | Clytia hemisphaerica | exon |
TCONS_00013205-exon-sc0000163-1575043694:331733..332051 | TCONS_00013205-exon-sc0000163-1575043694:331733..332051 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000163 | supercontig | sc0000163:320172..332051 + |
Blast
BLAST of TCONS_00013205 vs. Swiss-Prot (Human)
Match: FKBP2 (Peptidyl-prolyl cis-trans isomerase FKBP2 OS=Homo sapiens GN=FKBP2 PE=1 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 3.700e-34 Identity = 60/114 (52.63%), Postives = 83/114 (72.81%), Query Frame = 2
Query: 140 KKDLQIIIEEKPSECEDFARPGDVVHVHYTGMLTDGHIFDTSMRENRLPFKFQMGSGMVIKGWERGLHGMCPGEKRKLVIPPHLGYGKDGIMGVVPPEATLLFQVQLVGLERET 481
K+ LQI ++++ C +R GDV+H+HYTG L DG FD+S+ +N+ PF F +G+G VIKGW++GL GMC GEKRKLVIP LGYG+ G +P ATL+F+V+L+ +ER T
Sbjct: 28 KRKLQIGVKKRVDHCPIKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQ-PFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKIERRT 140
The following BLAST results are available for this feature:
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