TCONS_00013211 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013211
Unique NameTCONS_00013211
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1823

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013211 ID=TCONS_00013211|Name=TCONS_00013211|organism=Clytia hemisphaerica|type=transcript|length=1823bp
caaaAAGGGAATCAATAGAAAGGGCAATATATTAAAGAGTGAAAGATTAC
CGCATCCAACAAAAGAAAATACCTTGTTATAAGAATTTGTATACAAAAGA
CACTGCATGGTCCATTTACATCATTTATATCTATCGACGTGTCAAGCTCG
CTACTAAATGTTGGTTAAATTGGTATTAGGTATACATCAAGATCCCTAAG
AATAACTGAACGAGTGgatttttgattattgattGCTTATTGATTAAGAG
ACGTACTGAACTATTCAAAAGAATTTTACTTCATTCAAATTACATTTTGT
AATCAAGAATCAGTTTAGttttattttgagaataaaGAAATCGAATTTCG
CTTGAGTATATGGATCTTGGTTTTGATGGAGCTATACACACATTTCAGAA
AAAGattggTACATACGATAAAGCTAATTGGGAAATTATAGTGGAGAAGC
AGTCCATACCACAGattgacAAAACTTCCAGTGACGCTAAACTACCCACA
GACTTACTGGATGTTGATTTGCTTCGAGGCTCTTCCTTTACAAAGTCTAA
ACCTGGATATCATTGGACGCAAGTAACAACCAGTGGACTCCTGAagatca
tcttattcccaattTATTACAGCtgGTGGAAGTCACAAATCACACAATGG
GTTTGGATGTTTATGAGTCTTTATTTTCTGCAGCTTTTTGGTTTGgtaat
ttattttgtttacCAAGCAGATGAATCACTTGTGGATATAACTTGGCCAG
AAGCCTTTGTGCCGATCATGGCGTTGATATTAGTAGGGGAGTTGTATATC
CATGTTGTTTCATCTAACTTCACCAAGCCGATGGCTCATAAGATAAAGAA
AACCAACAAGAAGAGAAGCCATGATACCAAACGACCGGGACGCGGAAAAG
ACAGAAAGAAAAGCAGTAAAAATGTAACTATCAAACGCAATGCGGACACA
ATCAGCGATGAAGGGATCGAAAGCTACGATGGCCGAAGGCCTAATGACAC
AAGCCCTGAACGACACTCCAGTCGCGCGGAGAGCGTTGAGCGTAAACTGG
AAAGTGATGATGAAAATTCGATCTTGTGCAAAGCCAGTCACCCTGAAAGG
TGCCTCCAAGGCGCTAGTAATTCACTCGGGTACGAGGTCAGGAAGCGTAT
TGTTACTAGCAAATCCATAGATTCAAATGAAGACATCGAGACTCATCAAC
CCACCGAAAACGTAGAAAAAATTACATCACCGCCTACAAAATCTTCGCAA
CGCTCATCACCAAACAAACGTcaaaatttcaaccaatcaacATCTATTTC
TGCGACAGCCGACGAATCATCATCTAGCGATGAATCAACCGACTCGTCGG
GTTCGTCGTCAACATTGTCGGAAAACGAGGAGCAAATGACGGAGATGGTG
GAACTTTTTCGGAGTCCGTTGAGCCTGAATAATGCAACTCCGTCCGATAA
CAAGTTGGTGCATGCCGTACCAAGCGCTATGACAAGACCAGGAAGTAGCG
ATAAAATTACTGTGTCCATTTGGTCTGGGAATTCATTCAAGAAACTGAAA
TTGACGTTTTATGAGATTGGTTTAGAAGTTGTCAATCAAGTGGAAATTCG
AATGAATCATACTGGATCTGATTATGTGAAATTTtcgctgatgtcagcat
ttttgatTGGTATGCTTCCCATGTTGTTTCGTGTATACAAATCACAAGTT
GGTAAACACGCAGACATCACATGTACTAAAGCGGCAAGcgaagtaaatat
ttttttggattaAAACTCTAATCAGTAAAATAAGTAACGGTCAATATTTA
ATGTATATCAATTTGTGAAGCCA
Run BLAST on NCBI

transcript from alignment at sc0000163:369171..383478+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013211 ID=TCONS_00013211|Name=TCONS_00013211|organism=Clytia hemisphaerica|type=transcript|length=14308bp|location=Sequence derived from alignment at sc0000163:369171..383478+ (Clytia hemisphaerica)
caaaAAGGGAATCAATAGAAAGGGCAATATATTAAAGAGTGAAAGATTAC
CGCATCCAACAAAAGAAAATACCTTGTTATAAGAATTTGTATACAAAAGA
CACTGCATGGTCCATTTACATCATTTATATCTATCGACGTGTCAAGCTCG
CTACTAAATGTTGGTTAAATTGGTATTAGGTATACATCAAGATCCCTAAG
AATAACTGAACGAGTGgatttttgattattgattGCTTATTGATTAAGAG
ACGTACTGAACTATTCAAAAGAATTTTACTTCATTCAAATTACATTTTGT
AATCAAGAATCAGTTTAGttttattttgagaataaaGAAATCGAATTTCG
CTTGAGTATATGGATCTTGGTTTTGATGGAGCTATACACACATTTCAGAA
AAAGGTATGTCGTATTTTTTTGTtatcaatttttctttggtGAGTCTTAA
CCACAATacagagagaaaaaaaatacatttacaAATGTAACTTTTCCCCT
TGCCCCAATGTTTGACGGGTTTTTCGCATAAGTCTCCAACATTGAGACTA
GGGGAGAGCaactttttttcatgaaatttttagCAAACATATTATTTGTC
CAACTATAGAAAGGTATTTTACAgtgttttttacatttttgctttttaaa
ggaTCTCAGGCCTAATTTACATTTTCAGCAATTTGCTAGTGAATTGTTTT
ACTCTCTgtcatatcaaaatttgaatgcaATATTGACACCCCCAGGGGGA
ATGTGAATGTtttaaatataagaaatatgatattaagaaaatttaaaaaa
tatttctgctCAAACGGCATATTTTTCCCTAATCGTTCGAGTGGAACATG
AAtccacgtttttttataagaacatccaaaatttttgaagccttgggatg
atcttaactttttgagatttaaacctaaaaatgttcttaacatgttctca
ttttcgccattttttgagtatttttgtctattttcctaagaaatcgggtg
ttatAGAAtccgtaaagccttaaaatgcttttaacttgttcttaatattt
tgaccatcgaagcctcgtgttcttatatagtttgctcttatNtttttaac
ttgttcttaacattttgaccatcgaagcctcgtgttcttatagttttctc
ttataaaaaaacgtgtattttttggATGGAAtgttcaaagaaaaattgtc
aaaattatcTGTTGAAACCTCTCTTAGGCGGTGGTCTTGTTTACTCAGCT
CAACCATATGTCATGATTTTTGAACACTTTCCAAATGTCCGAATTCCTGG
GCAATAATTACAGTGCTTCATTAAAATTTTGGCACAATGAACAATGAACA
ATAGAGGAATTACTACAGCTGATAAAAATACTCGACATTCCTACATTACC
CTTTTAAGAAAATCCGATCAGTGAAAATtgatacagtttttgaaaatgga
atttcCTTTTCCTCTTgctatcaatcaatcaattgacCACAACTAACTTA
CTAATGACTTCGGAGAGAAAGACTAACGAAGGCTAACGAGTCTACACTAA
TGCgataatgattttcttaatgaACAGTTAATAATCTTTTTACttctctt
ttttgaaaataccattGTCTTGTTAAGCCCTTTTTAAAATGCCGAACGGC
CACACACAGGCTGAATTTGATGTAGAGATAAACTATAAGTTCAGCAAGCC
ATGTTAATAGgctcttccaaaaaaaagaaaatccgtTATTCATGGGAAAT
ATTCTCCATGGGTATTGGAAATTTTCGTAAAACCGTCATTTTCAATGACC
AAGGGGTTTGATtcgatgcttgtccaggggtaaaatAATTTGCTAAGTAT
TCCATAGTCTCCCCTTAGTATTGAAATTGAAAGCCCGGGTGGATAACTAG
TTGTGCCTTCTGAGCAATGTACCTTATTCATCCCCTTTTAGTTCCTAGCC
AAAGAGAAAAACTAGTCCTTATATATTAGATTGCATTTGTAAAGGCAATA
ATCCCTTGCAGGGTGTCCGTTTAGAGAGCTTTGATGTATAAAGGGTTTTG
GTATTTCAACTCCATTCAGGATCTCATTGGCGGCTTGACTGTAAAGCGGA
CCCAATATCtacggaaatttcaaattgacgTAGTACTACGCTCTGTTAAA
CTTTAGATACACTCCAGGTACTGAGTAATCAACGGCACATCCCCAAAGTT
AAGGGCAGTAATGAAAGGATGTTTTATCGAGATTTATTCTGGTACGAGTT
AATCAATAATCTGAATTGCACTAAGTAACGTTTTATATAGTTATAGAATT
GTAGCGATTTTTATGCAATAGATTTTTGAATaattgaaaaagtaaaaatt
tgaccTGACCTGACCTGACCTGACCTGACCAATTGaccttttttataaat
tatttaaaattgtCCGTCTCTAAAAAGGGACAAATATTGGTGTTGCAAGT
AACGATATATAATTTAATATGTCGATAGCAGCGCAAGCTATGGctactta
tcagcgccatccagtctatcaaaaagcaatAAGTGGCCCTCGGTCAAGGA
CCTAGCAGacctttctaatttttttaatttaatttaattttaatttaatt
tacagtaatatatttctcaggtctatcgacctctatgaaataatcatgct
taacattttacaattttacagttgTAGGCGCACGGTGGGCCTCTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcttctttctcttctttga
tgaaattcttgatctttacctcttgtttctttagctcatctttagTAATG
CTAGCGTATGTCTGTTGTTGCTTTGATTCTATATCTTGGTCTATtttctt
tagctcatctttagCGATGCTAGCGTATGTCTGCTGTTGTTTGGATCCTT
TAACGACATCATCTTTGTTTACAAGATTTCTGAGATGGTTAGTACAGGGC
GCTCTGAAATAAAAGAGAAGCTCATAACATGTCAAAAGTAGATATATTTT
TGTGATTTATATTGTGttttaacaaaaagaaagcGCGATGACATTAAATT
TCTACTTTAATTTGTATATCTGTTTtggctttttcctttttttccggaca
ccctgtagattTGCGAATTGCGTATGGAAAAAATAACCTGTGTCATGGTT
GTATACGATTTGAAAGGTTGTTTTTGGAGTAATTATATGCCTTATTACAa
attagcttagatttgtaaaggacgagcggggcgataaatccgtaatagcc
ccgcttttttgtaatcgccctaatgaatacaaaaatttctattggttgaa
agaaaagtatcgtacgatattttgattggttaagaaaatatcgtacgaaa
tttttaagccaatcaaagtaagagtgtcagtcgaatgtttttttattgtt
tcgaatgtttttataagtttcgaaaagaatagcgattgagtgttcttcaa
ttctttttttgaccatataattaacgcggaataacatggtattctcgggt
gattttggattaataacccctcgttttcaatgttttcaatgaacctcggg
gttattaatcccaaatcaccctctaaaccatgttattacaaAAACATAGA
TATTGGAAAATATAGCATCCAGCATGCTAGACGGTTTTTTTAGTCAGAAT
AAAAAAcacataaaaaataaaggaaGAGTAAAACTGATATTATGCCGTAA
CAATTATcttattatcatataacacccatattactgtattataaGGAGAC
TACCTTGTTACACGAacattactagtcattttattgacacgaattgaaaa
atttcgtgttaaaaaaaaacccttaattaaaaccagccgctgtttccttg
aaaaagtagaaaaattcgtgttaatttcagatcgtgcTAATTTCAAGGCT
GttaaatacttgcctagtaatattcgttaATAGTAATATATTAAGTTGTT
ATTTCTTTTGAATTatgtttctttctttcttttttcagattggTACATAC
GATAAAGCTAATTGGGAAATTATAGTGGAGAAGCAGTCCATACCACAGGT
AATAATTTACAACAAATCTTAAAATGGATCTCAGAcgacctcgtccccgt
gtattctaGGCTTTacttacgttactgattgacgccagagaatttTATCT
GGCACTATCAATAAGTATCAAAAAGCTGAGAATACGCAGGGAGCGAGGTT
GGATCTaatattatttttctaaagGTTAAAGACCCGCTTAATCATTAGTT
ATTAGTTGTTGGGTATGACTCCAGAGTCCAATACTTTTAAGTTTCTAACT
TATACTTTAAGTCACAGAATCCGATCTAAAGTTACGAAAAGAGTGCAGAA
AATCAGATCATTGCTTCTCGCTGCACAATTTCTTTTAGAGAAAGTTGTTT
GAGAAATGAATTTTTCCACGTTAACTTTATCATCTTTTAAGTAACCTTCT
AAGATTCCCCAAACTTGGAAGTTTGTATCATTGTTAGAAAAGATTTTGAT
CTTCTAACTTGAAAGTTTTTtagatgttttaatttttttttcagattgac
AAAACTTCCAGTGACGCTAAACTACCCACAGACTTACTGGATGTTGATTT
GCTTCGAGGTAAACCTTTCTTTCTATTACCAATGGGCCTCAGGTCAAGCT
ACAATCTTCACTAAAGATAACTTTAACCAAAGGCTGGCAAGTATTTTACA
GCTCTGTGTGGCAAGCTGGATCTCTCATAAGACTGTTTTTTTCCAGTTAT
TTATACGAACTAACATTTTTCCGTAAAATAGTCATATAACATATATACCG
TCAACTCACTCTAATTCGAAACTCTGTTCTTATTCGAGCTTAAAATATTG
CTCCCCTCAGCTGATGAAAAccggtttaaattactctctgtaatttggat
ctttctctaattcaaagaaaatttttgatccTATGAAGATTGaattaccc
agctggcacacaacgttcttttaacgtttatctaacgttcacaacgtcca
taaaatgtttgatgaacgttgaaacaacgttgtgtgccagctgggtagag
AAAGTTAACTGTATTACTGTATGATTATAAACGGCTCCAGTGTATCATCT
GGCTGCTTACTTGCTTGTTTAcgattataaaaaataaaacttgaagcCAC
TCAgcctacatgttttttcttttataagcataacgtttataagcatatgc
aggctcagtatttggtacctaaacaatggctctattgtttgagaacaata
gaatgctaagcataatgcgagcctgatgtagggacagacacttgcttgta
aaaaaaaacaacatgtattGCTCAAGCATCCCATAATTCCCTTTTTGTTT
TGTCACAGGCTCTTCCTTTACAAAGTCTAAACCTGGATATCATTGGACGC
AAGTAACAACCAGTGGACTCCTGAagatcatcttattcccaattTATTAC
AGCtggtaaaagctttttaaacttttaattgTCTGTAAACAGAGCCGTTA
tctagggaaatttcaaaattcattgctgtaGAGATCACTAATGTACTACA
cgcttctttataagaacatgaggctgaaAAAGCActaattttaacagatt
tttaaCACATTTCAAGTTTTCAAGTAAAGAAAATAAGCATATTATATTAA
GGACATCAGCCTGAgccaaaaatttactggttcttataaaaaaaagcgtt
taatCTACGCTATTACCCAGTTTATGTATgcgtgtttttctgcgacggag
acggtaaggttctaatttgactagatcctgaccagctgaggacgacggta
aatcagcaatTTTACCGCCCTCGATTTTTCGGGTCAGaattgcgggttat
tccaaatcgcttcagtcactctaccgtcctcaaaagcgcaaatacataaa
ctcgctattattgAGTTACAGAGACTTAAGTGCGGACCATTAAAATAAAA
GTTGAATTCGGCTAAATATCCGTAATGATCCTCGATTTTTTTCTAGGTGG
AAGTCACAAATCACACAATGGGTTTGGATGTTTATGAGTCTTTATTTTCT
GCAGCTTTTTGGTTTGgtaatttattttgtttacCAAGCAGATGAATCAC
TTGTGGTTAGTGTATTGACTACTGGGGTTTTCCCCTACTTTTTACTACTA
GTTGTAGACTAcacggtttttttttttattagaacccagtttataagaac
atttaggctgagattcgtcgaaaaattaagaacatcgtaagaacatgccc
agcctcagtttggaaaaaaatgacaagaaactacaattttttcctctttt
caagcagttttaacccaacttaggcatggattttctaaaatcgagagtca
aatttTGTCCAGATTGTACCAATTTTatatgctctttattttgcatgata
ttgtcgatttagagtagtctgaaaaattaagaacgcgtttaagaacattt
aaggctgaaaattgctaaaataataagcacatccaggctcagccaaattt
taggtgttctaataaaaaaaaaacgtgtactgggGTCTCTTTCTCCCTCC
TGTTTATCTTGTCTTACAAATAGATGGGGAGGCCGGGGAGAGAGATGGAA
AAAGAAGGGGGAGGGGGTGACTATTTTACCcataattttgacaatttttg
ataAACTTATTCCTTTTGAAGGTCGATTTACACTGCCATATGATGTTGta
atattcaaatttaattagcATGGAGACGTCTATTTGGGAGAGAAGAGTAA
AAGGGCTAGAAACCAAAAGTATAATTTCCCCACATAGTTAATTTTAATTG
CTTCAGAATTTCTTCGACCTTGAACTCGAACTTTATTCGAACACTTTGAT
ATTCAAATTGAATAATAATGAAacgaccaaaatattaaaatcatcaCATA
GAAGATTTTAGTTGGATATTGGGTTTGTTTAAGATTTTGTTTTCGGGCTT
TGTTCTAATTCTAGCCATATTTTGACggcttatttttttgtaatttattt
ttcttcatttctgtAGGATATAACTTGGCCAGAAGCCTTTGTGCCGATCA
TGGTAAAGAATGTTTAATTTTCAGCTCTTTCTAAATGTAacattttatca
gaaaaattttgcgcaaatttggaaggagaagaaaaggaaaattgGCGCAT
TCACACCAAAAGTTTTACCCATTCATTTAATCAAAAAGTCGATTCTcgct
tttaaatttttcaattcacaCTTTCTATCTTTAAAAACTATTATATAAGT
ATAGCACAAGCGGGTAccgagaaaatgttaaaaaggcTAAGAGCCTGGTT
ACATTGTCATTATTTTCTGCTTCGACCTTAGGCGTTGATATTAGTAGGGG
AGTTGTATATCCATGTTGTTTCATCTAACTTCACCAAGCCGATGGCTCAT
AAGATAAAGAAAACCAACAAGAAGAGAAGGTACTACCTACACTGCCATTA
ATAAATAATAAACTGATAAAGTGGAGTTTACACTAAGCTGCCGGAATTcc
actgatttttttttgctataacaTTTAGTATTTTAGTGATACACGCTTCA
CTGCAACAAATTGTTGATCATAAGGCAATGGTTCTATAGAGACTATATGA
TAAATATAATTCGTCTCGCTGTAATTGAGCCTATACTGAGCTGTCACTGA
ACGCCATAATTATTCCGATTTATGTCAGCGATATTCGAGTGGTCTGAGGA
GTCAGCACTGCAAACCGGAGGATTACCGGTTCGAATTCCCGGTCCTTCCA
ATGtttcgttcagttcatagatagtcGAGCCAGCTGGTCGTATATCCCTT
AAATACAATTAAGAGGCTGTCTTAAGTCTTAGAATCTTGGCTATCCTCGT
AAAACATCGACTCTatctaacgtccatataacgttattaACGAATTGTTT
TCCTTATCTTAGCCATGATACCAAACGACCGGGACGCGGAAAAGACAGAA
AGAAAAGCAGTAAAAATGTAACTATCAAACGCAATGCGGACACAATCAGC
GATGAAGGGATCGAAAGCTACGATGGCCGAAGGCCTAATGACACAAGCCC
TGAACGACACTCCAGTCGCGCGGAGAGCGTTGAGCGTAAACTGGAAAGTG
ATGATGAAAATTCGATCTTGTGCAAAGCCAGTCACCCTGAAAGGTGCCTC
CAAGGCGCTAGTAATTCACTCGGGTACGAGGTCAGGAAGCGTATTGTTAC
TAGCAAATCCATAGGTCAGTCAGTTCTTTCTAATCTTTCAGGAATTTGGT
ACACGCTTTTATTCTATATCTAAAAGTCATTTAATAATCCTTTCTTCTAG
GGGTACATAAAAACATTGCGGGCCTTGTTTCAAGCACTTCATTTGACATT
TTACACATTTTAAATGACCGTCATCATCAACTTTGCTACAAAAATTCTAA
CATCCTCAAACGCTTGAAATACGTCTGTCAACCCTTAGTGGTGCGGTCAG
CTTCTAAAGGGTTTGGTAATGAAGTTACAAGGAATTGAACTCAAAATCTA
TCATCTATAAAGATGTCAACGACTTCAGGTATTTTGACGGTATTCCTTCC
TTGAAAACTAGAACCCAATCTCCCCACGCTTCAAAGATTGATCGCTGTAT
TAACGTCGTATGCCATTGTTGTATTATTATTAAACGTGGCCCAATGGCAA
TGGTTTTACGTTTCTCGGGACGGGGTGTGTTGAAGATATTATAGATAAAG
ATTAAAAGCGTGTACCATAATTTCCATATTTTATTGTTGTGTATTATATA
TTGTTTTATGAGTTTTGTattttctgttctttttttcttattgtttAGAA
CAGTTTGTTCTCCTCTTCTATACGTCAGAGAAATTTGTGATCTGTTGCTA
TTTGGTGTAAGTAAAAACCTCTCAAAAGAGAAGGGGGGACGCCTGCTACC
CTTGCTACTGTATACCTTAGCTAAAGAAACCCCAGGGTTTTATCCACAAA
CCTGATGTGATACCCGACcgactggaaaatttggccgaaatttcACCCCA
AATAATCGGAAATCGACTCGGAAAATTTCAATGTAAAGTATTTCACTCCA
AAATCATcctcattggatttttttagctTAGAGAAATAGATTTTCCATCT
TCATTGGGCTTTGTACCAACGTGTTTTCATAACGACTGCGGGAGAAAGTT
CAACCGGAGCGGTGTGTGTTTTTACTCTTGGGTGAAGGCTTATACAGCAT
TTCTGATTTCTGATTCCGATTTCCAATTTCAAACACTTTCAATGAATTAA
CTAACAAATGGTTGTTACCTTTAAAGTTAAGTGTCGGGATATATATTGTA
TCAGACACCTTACACTACACTTACACTCACAAGGATCTAAGATTTTGTCA
ATTATTGAAACCCGAATGAGAATCCATTGTTTTCATTGCATCACATATCG
AACATTCGTTAAAATTCCATATAACATTTTTCTTGATATACAGATTCAAA
TGAAGACATCGAGACTCATCAACCCACCGAAAACGTAGAAAAAATTACAT
CGCCGCCGACAAAATCTTCGCAACGCTCATCACCAAACAAACGTcaaaat
ttcaaccaatcaacATCTATTTCTGCGACAGCCGACGAATCATCATCTAG
CGATGAATCAACCGACTCGTCGGGTTCGTCGTCAACATTGTCGGAAAACG
AGGAGCAAATGACGGAGATGGTGGAACTTTTTCGGAGTCCGTTGAGCCTG
AATAATGCAACTCCGTCCGATAACAAGTTGGTGCATGCCGTACCAAGCGC
TATGACAAGACCTGGAAGTAGCGATAAAAGTAAGTTTGTGTCCCAGAAAC
CAAACTTTTGTTTGCCTCCTTGAAAGAAGAAGGGCAGCTTTTAGTACATT
TAGTGCCATTCGGATAATGGATTGAATCcagcactttctttgttttcacc
tTTTATacgtttctttttttaattttggtggtaAATGTTAAATTTATGAA
AACCACGCGGGCGGCGCAACTTATGTAGGAAACAAGTGGGAAACAAGTGG
CTTCAAATCTTACATAGGAGATTCGACTTAACCCTTCGACTATATTTTAC
AGGTCTGTTTCCTAGTAGAGTAGTAATAGGGTGAAGAGTTGTATAAAATC
GAACTCCAGAAATTTCATAGATGCAGTCGAAATATCCTAACTTATGTGCG
CTTAATCCAAATGGATCCTTTGATACTTCAAGGTCATAAACTCTTTCCCA
GATTTCTCTATCGTCGGCCGGCTGTTCTGTTTTCAGCAGTGGAATGCCAG
TGTCTTCCCAGATGAGATCtctaataataaaatcaaataataTCAATCAT
TTTAATATCCCATTTTCAGTCACTGTGTCCATTTGGTCTGGGAATTCATT
CAAGAAACTGAAATTGACCTTTTATGAGATTGGTTTAGAAGTTGTCAATC
AAGTGGTAAGTTTCAATTTCCTTTCTTCGAAACAGAAAGTCGTATAATTT
TCCTTTGAAGCAATGGGATTGAATCGTTTCGAGAGGAAAATACACTATGG
TTTAACTAGAAGTTGTCAAACAAGTGGTAAGTTTCTAGATCTATTCTCTT
CGAAACGGTATAAGTCATGTAAAGTACTTTTGAACCAATGGGACTGAATC
ATTTGAGAGGTAAAAAACACTATGGTTAAAACTTTCCTGAATCAAATGAA
TGGGTAGTCATGACTTGGTTGCCAAAATTACAAGCAATCTCATTTTACTG
CTAAGGGTGCATTGATAGGTTTTGCAATGCAATTACACAAAATAATTGCA
TAAAATTTGACAGGctacattttgttttgaaatttctgatGCGTATGAAA
CACAGTGTAAATTGTGCAGCCACGACGCTGTAATGTAATATTTTCGGAAA
TTTATGAATAAACTGTGATTCGGTTTGCATATTTTACCCGATTTATATTT
CCTGAATTTACCATTAGATATATattttaaaatcgatttttcgatttttc
aaaacattaccTTTTAAGTTTCACGCCATGAATATTTAGATGTACGTTTT
CTAACTATCTCAGGAAATTCGAATGAATCATACTGGATCTGATTATGTGA
AATTTtcgctgatgtcagcatttttgatTGGTATGCTTCCCATGTTGTTT
CGTGTATACAAATCACAAGTTGGTAAACACGCAGACATCACATGTACTAA
AGCGGCAAGcgaagtaaatatttttttggattaAAACTCTAATCAGTAAA
ATAAGTAACGGTCAATATTTAATGTATATCAATTTGTGAAGCCAGTTAAC
TCCACAGACCCGGCTACCGTTCAAGGAAAAATGCCCACCGGGTGAAACGA
GGGTGAAAAATTGTGTTTGGGATATCCTTTCCTCTCATTAACTATGATGG
AGTTCTGTATTAGacctagcctggagatccatgctatgatttcttattct
atatactgatggcgaaatatataacatggtatgggctgagagttattctt
ttactggtcacactttcttagagaaagcgcaagttccgaaatttggtttt
tattttagtaagtgaggacagcgctaaattcgaatttcccactgtaaatt
ttttgaggcagaaatctgcctcacaggtcatacccgtcctgtatacatca
gattaaaaaaatacaggacggttctcctgtctatATTAGACCCTGTATCA
TCAACGATGTCACTCCCCTGGTTAGTTTTAGCTCATATAAACAAAGTTGC
ATCTTTATGTTACTACTTTTTTCTTTACCTTAGCTATATCGTCAAGTTCA
AACTTGGGATGGAATGGTTTCAATCTTCCTCCAACTCGTTGGGCCGACCA
TTCAGTAAGTgggttttgtttgtttgtttgtttgtttgtttgtttgtttg
tttgtttgttttacctcttcaatatttttttgtgatcattttcttatttg
aaataACCAACAAACTAACATGCCCTAAGATGTCGAATTCCATTGACATT
GCAGTAGCAATAACTCACCAAAAAACGGGATCATTTATTCTCCGTTCCCT
TGTGGGTTCCACTTTGATGAATTTCGTAAAAAAGAAGTCTATctagtgtt
ttgacgcaaatttagatttttttcgcTACTGCAGTACTTTCACCCTGACC
CACAGAATGCAGTTGCCTCACAGGATTCaggttttttagaaaattggctA
TTTTGACAAAGATATTTTACTGGGATAAATAGAAATGTTTTGGAGAAATG
CAGTCCCTTTAAAGATCTATACCAGACGATCCCCACCTACCTTTTAATTG
TCCTCTAAAATAATATTTGATTTGCGGTCAAAGTTTAAGATCTGGGCTCG
AGATGCTGCTGACAACAGTCATGGTGGCCACGCTCCTGGAAATTCCTGGA
ATATCCTGANTAATCGTTAAAATTCCATATAACATTTTTCTTGATATACA
GATTCAAATGAAGACATCGAGACTCATCAACCCACCGAAAGCGTAGAAAA
AATTACATCACCGCCTACAAAATCTTCGCAACGCTCATCACCAAACAAAC
GTcaaaatttcaaccaatcaacATCTATTTCTGCGACAGCCGACGAATCA
TCATCTAGCGATGAATCAACCGACTCGTCGGGTTCGTCGTCAACATTGTC
GGAAAACGAGGAGCAAATGACGGAGATGGTGGAACTTTTTCGGAGTCCGT
TGAGCCTGAATAATGCAACTCCGTCCGATAACAAGTTGGTGCATGCCGTA
CCAAGCGCTATGACAAGACCAGGAAGTAGCGATAAAAGTAAGTCTGTGTT
CCAAATAAACCTTTGTTGGCCTCCTTGAAAGAGAAAGAGCGACTTTTAAA
CTTGGCTTTTAATACGTTACATTTTTTTGTTCGAAATTGACTTACACACC
CTAACTTTGTCATTAAATCAGTGATTATTGTTATAATATCGCTCATTTTA
ATATCCCATTTTCAGTTACTGTGTCCATTTGGTCTGGGAATTCATTCAAG
AAACTGAAATTGACGTTTTATGAGATTGGTTTAGAAGTTGTCAATCAAGT
GGTAAGTTTCTAGATCTATTTTCTTCGAAACGGTATAAGTCATGTAAAGT
ACTTTTAAACCAATGGGACTGAATCATTTGAGAGGTAAAAAACGCTACGG
TTATAACTTTCCTGAATCAAATGAATGGGTAGTCATGACTTGGTTGCCAA
AATTACAAGCAATCTCATTGTACTGCTAAGGGTGCATTGATAGGTTTTGC
AATGCAATTACACAAAATAGTTGCATAAAATTTGACATGctacattttgt
tttgaaatttctgacGCGCATGAAACACAATGTAAATTGTGCTGCCACGA
CGCTGTAATGTAATATTTTCGGAAATTTATGAATAAACTGTGATTCGGTT
TGCATATTTTACCCGATTTATATTTCCTGAATGTACCATTAGATATATat
tttaaaatcgatttttcgatttttcaaaacattaccTTTTAAGTTTCACG
CCATAAATAGATGTACGTTTTTCTCAGGAAATTCGAATGAATCATACTGG
ATCTGATTATGTGAAATTTtcgctgatgtcagcatttttgatTGGTATGC
TTCCCATGTTGTTTCGTGTATACAAATCACAAGTTGGTAAACACGCAGAC
ATCACATGTACTAAAGCGGCAAGcgaagtaaatatttttttggattaAAA
CTCTAATCAGTAAAATAAGTAACGGTCAATATTTAATGTATATCAATTTG
TGAAGCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007386XLOC_007386Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013211-exon-sc0000163-1491911889:369171..369574TCONS_00013211-exon-sc0000163-1491911889:369171..369574Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1510915933:369171..369574TCONS_00013211-exon-sc0000163-1510915933:369171..369574Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1575043694:369171..369574TCONS_00013211-exon-sc0000163-1575043694:369171..369574Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1491911889:373759..373818TCONS_00013211-exon-sc0000163-1491911889:373759..373818Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1510915933:373759..373818TCONS_00013211-exon-sc0000163-1510915933:373759..373818Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1575043694:373759..373818TCONS_00013211-exon-sc0000163-1575043694:373759..373818Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1491911889:374315..374378TCONS_00013211-exon-sc0000163-1491911889:374315..374378Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1510915933:374315..374378TCONS_00013211-exon-sc0000163-1510915933:374315..374378Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1575043694:374315..374378TCONS_00013211-exon-sc0000163-1575043694:374315..374378Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1491911889:375129..375225TCONS_00013211-exon-sc0000163-1491911889:375129..375225Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1510915933:375129..375225TCONS_00013211-exon-sc0000163-1510915933:375129..375225Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1575043694:375129..375225TCONS_00013211-exon-sc0000163-1575043694:375129..375225Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1491911889:375767..375875TCONS_00013211-exon-sc0000163-1491911889:375767..375875Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1510915933:375767..375875TCONS_00013211-exon-sc0000163-1510915933:375767..375875Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1575043694:375767..375875TCONS_00013211-exon-sc0000163-1575043694:375767..375875Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1491911889:376787..376822TCONS_00013211-exon-sc0000163-1491911889:376787..376822Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1510915933:376787..376822TCONS_00013211-exon-sc0000163-1510915933:376787..376822Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1575043694:376787..376822TCONS_00013211-exon-sc0000163-1575043694:376787..376822Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1491911889:377102..377199TCONS_00013211-exon-sc0000163-1491911889:377102..377199Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1510915933:377102..377199TCONS_00013211-exon-sc0000163-1510915933:377102..377199Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1575043694:377102..377199TCONS_00013211-exon-sc0000163-1575043694:377102..377199Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1491911889:377683..377984TCONS_00013211-exon-sc0000163-1491911889:377683..377984Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1510915933:377683..377984TCONS_00013211-exon-sc0000163-1510915933:377683..377984Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1575043694:377683..377984TCONS_00013211-exon-sc0000163-1575043694:377683..377984Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1491911889:379214..379268TCONS_00013211-exon-sc0000163-1491911889:379214..379268Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1510915933:379214..379268TCONS_00013211-exon-sc0000163-1510915933:379214..379268Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1575043694:379214..379268TCONS_00013211-exon-sc0000163-1575043694:379214..379268Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1491911889:382227..382507TCONS_00013211-exon-sc0000163-1491911889:382227..382507Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1510915933:382227..382507TCONS_00013211-exon-sc0000163-1510915933:382227..382507Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1575043694:382227..382507TCONS_00013211-exon-sc0000163-1575043694:382227..382507Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1491911889:382686..382771TCONS_00013211-exon-sc0000163-1491911889:382686..382771Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1510915933:382686..382771TCONS_00013211-exon-sc0000163-1510915933:382686..382771Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1575043694:382686..382771TCONS_00013211-exon-sc0000163-1575043694:382686..382771Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1491911889:383248..383478TCONS_00013211-exon-sc0000163-1491911889:383248..383478Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1510915933:383248..383478TCONS_00013211-exon-sc0000163-1510915933:383248..383478Clytia hemisphaericaexon
TCONS_00013211-exon-sc0000163-1575043694:383248..383478TCONS_00013211-exon-sc0000163-1575043694:383248..383478Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000163supercontigsc0000163:369171..383478 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.40873	4.4903	2.73918	2.57528	1.52639	3.54697	3.12726	3.96517	5.18231	3.45498	2.31135	4.38097	3.52783	2.94234	4.2748	4.71527	21.78	11.4275	8.89922	10.0616	16.4926	17.8593	6.55521	8.69177	0	0	4.04396	4.70729	1.09896	2.16336
Blast
[Close]
BLAST of TCONS_00013211 vs. Swiss-Prot (Human)
Match: PHTF1 (Putative homeodomain transcription factor 1 OS=Homo sapiens GN=PHTF1 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.463e-25
Identity = 61/186 (32.80%), Postives = 106/186 (56.99%), Query Frame = 3 
Query:  381 AIHTFQKKIGTYDKANWEIIVEKQSIPQI-DKTSSDAKLPTDLLDVDLLRGSSFTKSKPGYHWTQVTTSGLLKIILFPIYYSWWKSQITQ---WVWMFMSLYFLQLFGLVIYFVYQADESLVDITWPEAFVPIMALILVGELYIHVVSSNFTKPMAHKIKKTNKKRSHDTKRPGRGKDRKKSSKNV 926
            AI  +QKKIG YD+  WE  +E+  I  + +K      +  DL+DVDL+RGS+F K+KP   WT +T  GL++++ FP++ +WW  Q+T    +VW+ + LYF+Q+  +V+Y +      +V+I+  E   P+  ++L+G ++  +VS+  T+P  +   +  +K        G  ++   SS  V
Sbjct:    8 AISWYQKKIGAYDQQIWEKSIEQTQIKGLKNKPKKMGHIKPDLIDVDLIRGSTFAKAKPEIPWTSLTRKGLVRVVFFPLFSNWW-IQVTSLRIFVWLLL-LYFMQVIAIVLYLMM----PIVNIS--EVLGPLCLMLLMGTVHCQIVSTQITRPSGNNGNRRRRKLRKTVNGDGSRENGNNSSDKV 185
The following BLAST results are available for this feature:
BLAST of TCONS_00013211 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PHTF11.463e-2532.80Putative homeodomain transcription factor 1 OS=Hom... [more]
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