|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013216 ID=TCONS_00013216|Name=TCONS_00013216|organism=Clytia hemisphaerica|type=transcript|length=3415bpRun BLAST on NCBI transcript from alignment at sc0000163:418557..436516+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013216 ID=TCONS_00013216|Name=TCONS_00013216|organism=Clytia hemisphaerica|type=transcript|length=17960bp|location=Sequence derived from alignment at sc0000163:418557..436516+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00013216 vs. Swiss-Prot (Human)
Match: SPAG1 (Sperm-associated antigen 1 OS=Homo sapiens GN=SPAG1 PE=1 SV=3) HSP 1 Score: 346.28 bits (887), Expect = 6.709e-102 Identity = 300/993 (30.21%), Postives = 481/993 (48.44%), Query Frame = 3
Query: 78 FGVCKSDQSIPIEHLDYKFIGSCKDVELLQKLVKILRSGEEGIYPDLTHFAEEQLRKFSPKNPLLEKVNPEKSTSELGNEEQQNIVNDLKGFTKDTKTLQN-----------GNKDNLPPVRNSKT-LNVDADKENKPEVNKKSDNKRVTPRSYDEWSKLDKEIENSTNEDDIASSKGAKAKMNDTGKGSLKPDEMIGKLNTKDLTIEELAEQAEKEKNKGNEAFRSGDYKEALVYYNRSIELSPAPAVHNNRAMAYIKLEEYEKAIIDCNCVLKDESNNIKAFLRRGLAYQXXXXXXXXXXXFTMVVEIEPKNKRGKELYESVYKDLEXXXXXXXXXXXXXXRLVVEEIDSTQDE------------GDSKTTEPMKKSPGNRIVIEEVDSVSAPVQEVSQGPIKPAEEAPETVEVKEQQQIQEPTLESTASTGGIETQDNIMNXXXXXXXXXXVVYKELPQDALKWKNEGNDLYKNGQYQEAYQKYTFAIQILMDDVTGYKTALSSLFNNRAICQLKSGNCSECIKDCTKSLK-YLANIKAIQRRATAYETLEKYKDAYADFQIVYSRTRDPKVSQ-AMSRISNHLKSDYGRDWHDKLPARDALDWNDAPASAITSPPVKSSVQEEENTKQASTVEDQSPALVKQANNNIASQTXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXTIQEQFVETKEKGNSFVKQAKYSEAIPFYTQCISLLPSEVPSYTNRALCYLKVKEAKPLKAVEDCTQALKLQPGNIKALFRRAQGYRMLKKYKEALGDLASILKEEPKNKAAQKDMDECKDLYRTELREMXXXXXXXXXXXXXXXXXXXIEEVTSDTLASNKPPTKQSTKNKTCPLA-KGXXXXXXXXXXXXXXXXXXINAVEFMQMWNGIKSGKSSEY-AEILRQIEPTKLPELLSNKLDGKILENFVWAISDHFTSKENYKYGMTLLKSMHRVQRFSTMLMFLGTQEKTLLKSSMDTL 2972
FG K+ + IPIEHLD+K+I C DV+ L+K++ +LRSGEEG YP+LT F E+ L+ +P++ L K P + + EE + I D+K + + K ++ KDNLPPVR S + L+V +K +K KK TPR Y EW K D E E ++D K L E +++T LT +E A +EK KGNEAF SGDY+EA++YY RSI P +NNRA A IKL+ + A DC VL+ E N+KA LRR Y+ KL A +D + V+++EP N K+ V +DL+ ++ ++ + GKR+V++EI++++DE GD K EP + + + + ++ + ++G +PA AP Q+ Q P A + + + ++ K++GN+L+++GQ+ EA KY+ AI +L + LS L++NRA C LK GNCS CI+DC ++L+ + ++K + RRA AYETLE+Y AY D++ V +++ +++R+S L G +W +KL S I + P +Q K+ + KQA ++ + + +Q T ++ F KE+GN V Y +A+ Y++C+ + E YTNRALCYLK+ + + +A +DC QAL+L GN+KA +RRA ++ LK Y+++L DL ++ +P A+ +++E L + K + + + +K +K++I+EV +P + S C + KG + S K NA EF Q+ N + + K E A +L P LP LSNKL+G + ++ ++ K+ LL + + +RF ML + +K L++ + L
Sbjct: 12 FGTTKTFK-IPIEHLDFKYIEKCSDVKHLEKILCVLRSGEEGYYPELTEFCEKHLQALAPESRALRKDKPAATAASFTAEEWEKIDGDIKSWVSEIKKEEDKMHFHETETFPAMKDNLPPVRGSNSCLHVGKEKYSKRPTKKK------TPRDYAEWDKFDVEKECLKIDEDYKEK-------TVIDKSHLSKIET--RIDTAGLTEKEKDFLATREKEKGNEAFNSGDYEEAVMYYTRSISALPTVVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLREATEDLSKVLDVEPDNDLAKKTLSEVERDLK-NSEAASETQTKGKRMVIQEIENSEDEEGKSGRKHEDGGGDKKPAEPAGAARAAQPCV--MGNIQKKLTGKAEGGKRPARGAP--------QRGQTP----EAGADKRSPRRASAAAAAGGGATGHPGGGQGAENPAGLKSQGNELFRSGQFAEAAGKYSAAIALLEPAGSEIADDLSILYSNRAACYLKEGNCSGCIQDCNRALELHPFSMKPLLRRAMAYETLEQYGKAYVDYKTVLQIDCGLQLANDSVNRLSRILMELDGPNWREKL-------------SPIPAVPASVPLQAWHPAKE---------MISKQAGDSSSHR----------------------------------QQGITDEKTFKALKEEGNQCVNDKNYKDALSKYSECLKINNKECAIYTNRALCYLKLCQFE--EAKQDCDQALQLADGNVKAFYRRALAHKGLKNYQKSLIDLNKVILLDPSIIEAKMELEEVTRL-------LNLKDKTAPFNKEKERRKIEIQEVNEGKEEPGRPAGEVSM---GCLASEKGGKSSRSPEDPEKLPIAKPNNAYEFGQIINALSTRKDKEACAHLLAITAPKDLPMFLSNKLEGDTFLLLIQSLKNNLIEKDPSLVYQHLL-YLSKAERFKMMLTLISKGQKELIEQLFEDL 904 The following BLAST results are available for this feature:
BLAST of TCONS_00013216 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.