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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013222 ID=TCONS_00013222|Name=TCONS_00013222|organism=Clytia hemisphaerica|type=transcript|length=3292bpRun BLAST on NCBI protein sequence of protein phosphatase 3 (formerly 2B), catalytic subunit >TCONS_00013222-protein ID=TCONS_00013222-protein|Name=protein phosphatase 3 (formerly 2B), catalytic subunit|organism=Clytia hemisphaerica|type=polypeptide|length=483bp MATGEDKQPIPERISKNVPMPPTHRLTVKEVFDSDSKPRIDVLKAHFILERun BLAST on NCBI transcript from alignment at sc0000163:15304..31104- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013222 ID=TCONS_00013222|Name=TCONS_00013222|organism=Clytia hemisphaerica|type=transcript|length=15801bp|location=Sequence derived from alignment at sc0000163:15304..31104- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000163:15304..31104- >TCONS_00013222 ID=TCONS_00013222|Name=TCONS_00013222|organism=Clytia hemisphaerica|type=CDS|length=15972bp|location=Sequence derived from alignment at sc0000163:15304..31104- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013222 vs. Swiss-Prot (Human)
Match: PP2BA (Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform OS=Homo sapiens GN=PPP3CA PE=1 SV=1) HSP 1 Score: 782.711 bits (2020), Expect = 0.000e+0 Identity = 377/472 (79.87%), Postives = 420/472 (88.98%), Query Frame = 2
Query: 245 ERISKNVPMPPTHRLTVKEVFDSDSKPRIDVLKAHFILEGRVDKEVALKLIENGANILRQENTMLDIDAPITVCGDIHGQFYDLMKLFEVGGSPATTRYLFLGDYVDRGYFSIECVLYLWALKILYQKTLFLLRGNHECRHLTEYFTFKTECKMKYSEEIYDACMDAFDCLPLAAVMNQQFLCVHGGLSPEIHTLDDIRKIDRFREPPAFGPMCDMLWSDPLEDYGNEKSAEHFTHNSVRGCSYFYSYQASCDFLQRNNLLSIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMNIRQFNCTPHPYWLPNFMDVFTWSIPFVGEKVTEMLVNVLNICTDDELDEPVDEQD--ESAKRKEVIRNKIRAIGKMARVFTXXXXXXXXXXXXKGLTPSGTLPVGLLSGGRDSLNSA-LSDLSMDSGHK-----NKIQGFADAKTLDRVNERMPPR 1636
+R+ K VP PP+HRLT KEVFD+D KPR+D+LKAH + EGR+++ VAL++I GA+ILRQE +LDIDAP+TVCGDIHGQF+DLMKLFEVGGSPA TRYLFLGDYVDRGYFSIECVLYLWALKILY KTLFLLRGNHECRHLTEYFTFK ECK+KYSE +YDACMDAFDCLPLAA+MNQQFLCVHGGLSPEI+TLDDIRK+DRF+EPPA+GPMCD+LWSDPLED+GNEK+ EHFTHN+VRGCSYFYSY A C+FLQ NNLLSI+RAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMNIRQFNC+PHPYWLPNFMDVFTWS+PFVGEKVTEMLVNVLNIC+DDEL D D +A RKEVIRNKIRAIGKMARVF+VLREESESVL LKGLTP+G LP G+LSGG+ +L SA + + D K +KI F +AK LDR+NERMPPR
Sbjct: 15 DRVVKAVPFPPSHRLTAKEVFDNDGKPRVDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVTEMLVNVLNICSDDELGSEEDGFDGATAAARKEVIRNKIRAIGKMARVFSVLREESESVLTLKGLTPTGMLPSGVLSGGKQTLQSATVEAIEADEAIKGFSPQHKITSFEEAKGLDRINERMPPR 486 The following BLAST results are available for this feature:
BLAST of TCONS_00013222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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