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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013225 ID=TCONS_00013225|Name=TCONS_00013225|organism=Clytia hemisphaerica|type=transcript|length=5587bpRun BLAST on NCBI protein sequence of TCONS_00013225-protein >TCONS_00013225-protein ID=TCONS_00013225-protein|Name=TCONS_00013225-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1312bp ELMLLDAKLKGLAAPSNLSMNQTLEGHSDTVKVITWNEKHHKLTTSDQKGRun BLAST on NCBI transcript from alignment at sc0000163:32273..107606- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013225 ID=TCONS_00013225|Name=TCONS_00013225|organism=Clytia hemisphaerica|type=transcript|length=75334bp|location=Sequence derived from alignment at sc0000163:32273..107606- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000163:32273..107606- >TCONS_00013225 ID=TCONS_00013225|Name=TCONS_00013225|organism=Clytia hemisphaerica|type=CDS|length=133926bp|location=Sequence derived from alignment at sc0000163:32273..107606- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013225 vs. Swiss-Prot (Human)
Match: WDR35 (WD repeat-containing protein 35 OS=Homo sapiens GN=WDR35 PE=1 SV=3) HSP 1 Score: 1317.37 bits (3408), Expect = 0.000e+0 Identity = 630/1079 (58.39%), Postives = 819/1079 (75.90%), Query Frame = 1
Query: 736 YNPFGQHLRTLXCIAYEDGAIIMGSVDWNRIWGKELKGIKLSKVEWSPDSKIILFGTNTGEVHIYDNIGNSIGAVSLPCLEGEVSGYNLVSVEWYNGKSGYLEENCPQLAIAYDIGRCQIMRHEFDDEPVLLNITMTIVSLKWSCKGDVLAIAGSQKTSSQDRDVNIVQFYNPFGQHLRTLKVPGKEMKAVSWEGSSLRISLAVDSFIYFANIRPDYKWGYFANTLVYAFTKPERSEWVVIFWDTKSNERYVKYVRNLISITAAAEHCVLVTRADDANMQH-----------VLVLCNAIGTPLDSRYIGIEPCFMAMTAGYVVAASREAFYTWNYKSTRKFNTSELTQTITRKRDGTEKLFHADDVPSGAGEGIQDIKKALASTSDPVCAVCVSEKLVVLGRESGTIQCYSLPRLGLENKYVLNCRPYQFTMNSNSTKLAIIDISGILTFFDFEAKTTNIQTGREQYGEHLKFERKDAWDMKWADDNPDLFAMTEKTRMYIFRNLEPEEPIVCSGYICQFNDLQIQSILLDEIMKDPENPTKESIIDIETKSLRDTRDLLDKVGIDDTYQFVMDNPHPRLWRLLAESALEKLDLEVAEKAFVKCQDYQGIKFVKKLNKLDVEAIRSAEVCAYFQRYDEAEKTYLDADRWDLAVEMRMKLGDWFRVVQLVKWGGG-GDDALLEKAWNAIGDYYCDHQKWANAVQYYVEGRNEERISECYYMLEDYKGLEKFSEQLPENHKLLKSIGQMFAGVGLCEQAVSAFTKTGEVKLAIDTCVTLNQWDLAVKLAKQHKHQEINSLLAKYASHLLEKDKKLEAIELYRKASHFIDAAKLIFQLASDIAKTRAHPMRAKKMYVLGGIMIENYHEMMKEXXXXXXXXXXXXXXXXXXXLAGLLQEDYTSSGDSYFIDNAWRGAEAFHFYLLAQRQLYEGRPDAALRTAMQLKXXXXXXXXXXAYSLIALTACSNKAFGVCSKAFIRLENIETLSEDERKRYEELALSIFTRYGAKDGAAPTVECTSCGSHIPEWSTACPSCDSKFSACIVSGRPLMEYQFWMCRLCKHRAHEEEISSYSACPLCHTAL 3936
+N GQ + CI YEDGA+I+GSVD NRIWGK+LKGI+LS V WS DSK++LFG GE+HIYDN GN + + L CL ++ + WY+G GY+E +CP LA+ +D GRCQIMRHE D PVL++ M +V ++W+ G VLA+AG QK + QD+DVNIVQFY PFG+HL TLKVPGKE+ A+SWEG L+I+LAVDSFIYFANIRP+YKWGY +NT+VYA+T+P+R E+ V+FWDTK+NE+YVKYV+ LISIT + C+L T+AD+ + Q VLVLCN+IGTPLD +YI I P F+AMT +V+AAS+EAFYTW Y+ +K E+ Q +++G E+++H DD PSG+ +G+ D K + T DP+CA+ S+K++++GRESGTIQ YSLP +GL KY LNCR YQ ++N NS++LAIIDISG+LTFFD +A+ T+ TG++ GE LK ER+D WDMKWA DNPDLFAM EKTRMY+FRNL+PEEPI SGYIC F DL+I+S+LLDEI+KDPE+P K+ +I+ E +SLRD+R L++KVGI D QF+ DNPHPRLWRLLAE+AL+KLDL AE+AFV+C+DYQGIKFVK+L KL E+++ AEV YF R++EAE+TYL+ DR DLA+ +R+KLGDWFRV+QL+K G G DD+LLE+A NAIGDY+ D QKW NAVQYYV+GRN+ER++ECYYMLEDY+GLE + LPENHKLL I QMF VG+CEQAV+AF K + K A+DTCV LNQW+ AV+LAK H +EI SLLA+YASHLLEK+K L+AIELYRKA++F DAAKL+F++A + AK + P+R KK+YVL ++IE YHE MK A + K K TS LAGLL+E+ S+ D F DNAWRGAEA+HF++LAQRQLYEG D AL+TA+ LKDY+DII P++ YSL+AL AC+++AFG CSKAFI+L+++ETLS +++++YE+LAL IFT++ +KD P ++ G + K C+ +G P+ EYQFWMC +CKH +EIS YS CPLCH+ +
Sbjct: 123 WNADGQKI----CIVYEDGAVIVGSVDGNRIWGKDLKGIQLSHVTWSADSKVLLFGMANGEIHIYDNQGNFMIKMKLSCLVNVTGAISIAGIHWYHGTEGYVEPDCPCLAVCFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHMGSVLAVAGFQKAAMQDKDVNIVQFYTPFGEHLGTLKVPGKEISALSWEGGGLKIALAVDSFIYFANIRPNYKWGYCSNTVVYAYTRPDRPEYCVVFWDTKNNEKYVKYVKGLISITTCGDFCILATKADENHPQEENEMETFGATFVLVLCNSIGTPLDPKYIDIVPLFVAMTKTHVIAASKEAFYTWQYRVAKKLTALEINQITRSRKEGRERIYHVDDTPSGSMDGVLDYSKTIQGTRDPICAITASDKILIVGRESGTIQRYSLPNVGLIQKYSLNCRAYQLSLNCNSSRLAIIDISGVLTFFDLDARVTD-STGQQVVGELLKLERRDVWDMKWAKDNPDLFAMMEKTRMYVFRNLDPEEPIQTSGYICNFEDLEIKSVLLDEILKDPEHPNKDYLINFEIRSLRDSRALIEKVGIKDASQFIEDNPHPRLWRLLAEAALQKLDLYTAEQAFVRCKDYQGIKFVKRLGKLLSESMKQAEVVGYFGRFEEAERTYLEMDRRDLAIGLRLKLGDWFRVLQLLKTGSGDADDSLLEQANNAIGDYFADRQKWLNAVQYYVQGRNQERLAECYYMLEDYEGLENLAISLPENHKLLPEIAQMFVRVGMCEQAVTAFLKCSQPKAAVDTCVHLNQWNKAVELAKNHSMKEIGSLLARYASHLLEKNKTLDAIELYRKANYFFDAAKLMFKIADEEAKKGSKPLRVKKLYVLSALLIEQYHEQMKN---AQRGKVKGKSSEATSALAGLLEEEVLSTTDR-FTDNAWRGAEAYHFFILAQRQLYEGCVDTALKTALHLKDYEDIIPPVEIYSLLALCACASRAFGTCSKAFIKLKSLETLSSEQKQQYEDLALEIFTKHTSKDNRKPELDSLMEGG------------EGKLPTCVATGSPITEYQFWMCSVCKHGVLAQEISHYSFCPLCHSPV 1180 HSP 2 Score: 357.451 bits (916), Expect = 1.065e-101 Identity = 163/261 (62.45%), Postives = 202/261 (77.39%), Query Frame = 1
Query: 16 DAKLKGLAAPSNLSMNQTLEGHSDTVKVITWNEKHHKLTTSDQKGLIIVWILYKGAWYEEMINDRNKSVVCDMKWNTEGQKICIAYEDGAIIMGSVDGNRIWGKELKGIKLSKVEWSPDSKIILFGTNTGEVHIYDNIGNSIGAVSLPCLEGEVSGYNLVSVEWYNGKSGYLEENCPQLAIAYDIGRCQIMRHEFDDEPVLLNITMTIVSLKWSCKGDVLAIAGSQKTSSQDRDVNIVQFYNPFGQHLRTLXCIAYEDGAI 798
DAKL+GLAAPSNLSMNQTLEGHS +V+V+TWNE++ KLTTSD+ GLIIVW+LYKG+W EEMIN+RNKSVV M WN +GQKICI YEDGA+I+GSVDGNRIWGK+LKGI+LS V WS DSK++LFG GE+HIYDN GN + + L CL ++ + WY+G GY+E +CP LA+ +D GRCQIMRHE D PVL++ M +V ++W+ G VLA+AG QK + QD+DVNIVQFY PFG+HL TL E A+
Sbjct: 49 DAKLRGLAAPSNLSMNQTLEGHSGSVQVVTWNEQYQKLTTSDENGLIIVWMLYKGSWIEEMINNRNKSVVRSMSWNADGQKICIVYEDGAVIVGSVDGNRIWGKDLKGIQLSHVTWSADSKVLLFGMANGEIHIYDNQGNFMIKMKLSCLVNVTGAISIAGIHWYHGTEGYVEPDCPCLAVCFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHMGSVLAVAGFQKAAMQDKDVNIVQFYTPFGEHLGTLKVPGKEISAL 309 The following BLAST results are available for this feature:
BLAST of TCONS_00013225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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