TCONS_00013252 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013252
Unique NameTCONS_00013252
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2205

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013252 ID=TCONS_00013252|Name=TCONS_00013252|organism=Clytia hemisphaerica|type=transcript|length=2205bp
aattttatttcacgatttatattttttttgcgaTGGTGTCTTTTTTTCAC
AAATGAGGTTTATAGTGTTGTGTGTGTCTGATATTGAGCAGATATGGGAT
ATCTGTTAGGAATCTACTGCGTCCGAAAAACTAAACGCGTCGTTTTGGAG
GCATCATCTCAAGAGTTGTCTACAAGTTCAGCAGAAAGAGTTGAGGAGTG
GTTGAGTAACCATAAGacGGACCCGTTACTATCATCAGAGAATATCCCAT
CAACTGTTAAATCCGTTTCGCCCGATTCCAGTTGTACTTTCGGAACACAT
TATCCAAATCGGATTTTCGTCGGTCATTTACCAGGCAAAGCAAACGCTAC
AGACTTAGCAGATTTCTTTCGAACTTATGGTACAGTTTTAGAAGGAAAAG
TTGTTCTGGATTCCTTTGGTCGAAGCAGAAGATTTGGTTTTGTCACATTT
GCGACGCAAGATGACGTTCAAAAAGTGTTATCCAAATGCCCATTcttctt
taaaggaaagaaaattaaTGTGGGACCTGCTGTTAAGAAAATGTTCGGTG
CTGAATTCTCACCACCAACCAGTCCATTAGGAGGAGGAGGTGCACAAACC
ACAGAAACTGGAAGTGAACTCTCCTCCTCCGAGGTTGAAGATAAAGAGAG
CAGTGGATCCACTATTGTAACTGTTCCTCCAGTCAATGAACCTAAAGATC
CAACTTCACCTAATACACCGAAGAGCGGAAATGTATGGCTTAAAGTGAAT
GCCAAACCCAAAATTTCGCCAAAAAAAGAGACTCACACTACAAAACCAAT
GTACCATCCATCACACCATTTTGTTTACCCAACCGTTACATCAACGCCAC
CAGTACAATCACACATCAGTCCTTACCAACAGGGCGGTGCTGGTAACATG
CAGTTTTATTATCCCCCTGTTTACActacaaaccaacctttcaactACCA
AGGTCCTTATTACACCCAATCACCTGTACCTTATTACGAAAATGGACAAG
CGTATTTTTTAAAGCCCGTGACAAACTATGGTGCGCCTCAAACCATGTAT
TTACCTGGATCGCTAACGGTAGCTTGAATATTTGAAATGTGGATGGGGCT
TTATGATTTTTAGTAGTTTTAGCCTGAGGATTGCAGGTTCATGAATGAGG
AATCGAGACTATTGAACATAATatgtaagaaaaaaagaaaactctgTTGA
TTTGGTGATTTTTAAACAGAGAGTTAGAGAGGGTTGActcaaaaaaaaac
ttgctGATTTATGTATAATTGacgaaaatttatttgaaactttatttTAG
AAGAGGAATTTTGTAtatgatttgttttgttttttttccactTTATCAAT
TACATTGCAGctatttttaagaaaacataTCATTTGAGAATTGAACTATA
CCTTTAGGCCACAATACTGTATTTTCCACGCTCCAAAAGATTTATAGCGA
ATTCGTTAACTTATGAACTAAAATCATATTTGACACCGTtgtaaaagatt
taaaatttaacaGTGTAAGTTAGTTAGAATTCCAATAGAATAATACTTAG
TCCAGGCCCATACTAATTATTACTCCATcacgaaaatgaaaatttgtata
GTGATATTTAGAGATTTGAAATCCAACTGTTAAAAAAATTGGTCCacaat
tttttggcaaaatttggcgGATactccaccgggtctgtgacacagaggtG
TAATATTGTAACTCATATTTTAcagaatttattttttacaaaacgaTACA
CAATTTTTATTTATCTCATATTACCGctaatatttttatcatttccCCTT
ACATAATCAATACAAGCCgctgaaatagaaaaaataaacgaGTCTGTAGT
TATTCAAGACTTTTGACTTCAGCTTActccatttttttatttctcgaGCG
TTACCTGGTTGGACTAGAGGCTTGACCATAAGATAATGTGTTTTTGTGTC
ATTTATTCTGAGTTTTTGGTGTTAATATTTGTAACTATTAGTTTATATTA
TGTTTGTTCGTGATTTTTTCGTTTATAGAATAgagattttactttttata
agatGGGTTAATTAggattttctgtaatttttgacgcattattttttagt
ttaattttccattgtttttttttcgagtttttcattttgattctcatcat
ttcatttgtattttatttgttAAACCTTTTATTCTCGTATAGCCAAAGGC
TGTCA
Run BLAST on NCBI

transcript from alignment at sc0000163:202785..207627-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013252 ID=TCONS_00013252|Name=TCONS_00013252|organism=Clytia hemisphaerica|type=transcript|length=4843bp|location=Sequence derived from alignment at sc0000163:202785..207627- (Clytia hemisphaerica)
AATTTTATTTCACGATTTATATTTTTTTTGCGATGGTGTCTTTTTTTCAC
AAATGAGGTTTATAGTGTTGTGTGTGTCTGATATTGAGCAGATATGGGAT
ATCTGTTAGGAATCTACTGCGTCCGAAAAACTAAACGCGTCGTTTTGGAG
GCATCATCTCAAGAGTTGTCTACAAGTTCAGCAGAAAGAGTTGAGGAGTG
GTTGAGTAACCATAAGGTGATATGCACTCTTTTTTTATAAGAACATCCAA
AACTTTTGAAGCCTTTGGGATGTTCTTAACTTCTTGGGTTTCAACCCTAA
AATTGTTCTTAAAATGTTCTTATTTTTACCATTTTGTGACCATTTTTACC
CATTTTTCTAAGAAAACGGGTGTTTTGAGTCCATAAAGCCTTAAAATGTT
CTTAAAATGTTCTTAGCTTGTTCTTAACATTTTTTTCATCGGAGTTCTTA
TGGTATAGTTTGTTCTCTATAAAAAAACGTGTATGTACTCTTTTTTTAAG
AACATTTATATAAGAACAATGAGGGTCGTACAATCTAAGAACAAAAGCAA
GCCAGGGATGGCTGAATTTACTGCTTCTTAAGGTTCATACCATTTTGGTC
AAAAAAGTGAAACCGGGGGTTTTTTAAATGCATTGAATTCATTCAAAAGT
TTACGGTATTTTTTGTGTGTTTTCTTTGTTCGCTAAACCAAACAGACTAT
ATACCATTCGATTTTTTGTTTTGGTAAACCATGATTTTAACCAAGCACTA
CACCTTATGAAAGTAGAATGTAAGATCAGTTTTATTAAGAGTGCTTTGGC
TACTTGATATCAATGTGCTTTGGATTTGTGTAGAAGAAAATTAAAGTTGT
CTATAGTCTCTTTGCTAACAATAGTGGCAAATTTTATACAGCTTTTGTCT
TGTTTTAATTTGCCACTACTGGCTATCCGTAGAAAACATTTCGTCATGAA
TATCATGAATTGAGAAAATGTTTGTAAACCTCTGACTAACAGCCATAAGT
AAAAGTGAGGAAGAAGAATCATGATGTCCCCATGGCATTCATGCATCTTG
AAGCAATTTGAATTTTAATTTTTTTTTTAATTTCAGACGGACCCGTTACT
ATCATCAGAGAATATCCCATCAACTGTTAAATCCGTTTCGCCCGATTCCA
GTTGTACTTTCGGAACACATTATCCAAATCGGATTTTCGTCGGTCATTTA
CCAGGCAAAGCAAACGCTACAGACTTAGCAGATTTCTTTCGAACTTATGG
TACAGTTTTAGAAGGAAAAGTTGTTCTGGATTCCTTTGGTCGAAGCAGAA
GGTAATGGGAAATTTTACTTTGCAATTTCTTTACTCGACTTAAACGACAG
AGTTGATATTTTTCATAGATAGCACTATATTATGGAATCTTTCAATAAAT
TCTTATGAGCTCCTTTGTAGAGGTTGGCAAAATACACAATGTGTTTTAGC
AATTAAAATTTTTTTGACCGTAGCCGCCAATTGCCTACTCTGTACCAGAG
TGAAGCTCACTATTATCGTAGCGATGAATTTTGAAATTAGCCGTATATAT
CGGGTTTGTGTACAGACAACCAATTGCCGCACGGGCATTTTTTTGTCCGC
TTTACCCTACTAAAACCGTCCCAGTCCTTTTTTCGCACCTACAGACAATA
GAAAAATTGTAGGATTTGATCGAGCTTAGGGGATGATTAAATAATTAAGT
GACACACGCGCCTGACCGCGCGTCGAAAAGGTGTATTAAAATTGTTTCGA
TTATTTTAACTACTCTCTCAGTTATTTATGAACCAAAAAATGAAGAGTCT
AAATCCTTGCTTTGACCATTTTAAGACAAAATGTTGATCTTCCAGACTCA
TCTTCGTCAGAGCTAACAAGAAGACCTAAAGGCAGGCCTGAGTCTTGGAG
CCTTTAGCTAGGTTCCGTCTTTCTAAGGAATGATTTTTTTTTAATTTGAT
GCATGTATGATTAACAGTGCCGTAGCAACTGGGGGGCAAGGGGGGCTATT
CCCCCCCCAATAATTTTTTCAAAAATGGTTATTTTGCAAAATGCAAATAT
TTCTTTTTTAATTTGTCATAATTTTCTTTTAAGTGCATGTTTTGAGTGTA
TTTTCAAGCAATGTAGAGCTCAAATTTTCAAAATTTTCCCCCTCGGACCA
AACCATGGCTGGCCCTTGCGGTGTCACTAAACTGCAGCCCCCCCCCCCAA
TATGAAAATGCTTCCTACAGCACTGACTAATAGCTGTTTTTTTTTTACCG
TTTTCAGATTTGGTTTTGTCACATTTGCGACGCAAGATGACGTTCAAAAA
GTGTTATCCAAATGCCCATTCTTCTTTAAAGGAAAGAAAATTAATGTGGG
ACCTGCTGTTAAGAAAATGGTAAGATTCTTCCATTTTAAATATTTCTTAC
TGGTCTCTTTGGTATGTTTGTTCAAGGAGCCAACAGATTATGTGGCTAAA
TTCCAGGCAAATTCAAAAGGGATTTGAGACTTTTATTTTGTATTATATTG
CGAAGAGAAGCATGGGGACTTGGACCAGTCTTCTGTCTTACCAGTAATAT
GACGGTTGTAGAGTTTGAATGCAATGAAACAGATCAAGACCGCCTTTTTG
AACAGTTGCTACTAGGATTTAATTAAGTACTTTATGCTCATTTCATCTTT
CTCTCATCTCTAGTTCGGTGCTGAATTCTCACCACCAACCAGTCCATTAG
GAGGAGGAGGTGCACAAACCACAGAAACTGGAAGTGAACTCTCCTCCTCC
GAGGTTGAAGATAAAGAGAGCAGTGGATCCACTATTGTAACTGTTCCTCC
AGTCAATGAACCTAAAGATCCAACTTCACCTAATACACCGAAGAGCGGAA
ATGTATGGCTTAAAGTGAATGCCAAACCCAAAATTGTAAGTGAATACCTA
TATACCTATCAATCCTCTTAAAGCGTGAAAAGAGGCCTGGTTAGATTTTA
TCAAGATTTGTAGTGTTTTGGCGGTTCATTGGGCTTAAGTTTACAAGGTT
GCTAATGACGTCAGATGTACCTAATCGAACCCGTTAAACTGTTTAAGCTT
GATTTCGTTTTGAGGGGATCAATATACCATAATAACAATTTAAAAAGTCT
TTATAACTTAAGGTCGGAGGAATCAATAATCTCAAGTTATAGATTATATC
TTTCGAAAATTCATGAATGAATTTTCGAAAGATATAATCTATGATTCGCT
CTACGAAGTATTGAGCACTATTTTAATGGTTGTCCAACCAAGATGTTATA
ATCTCAAGTTAATGAAAGCTAATTATTATTTTTTATATAGAGTTCAAGTA
TAAGGCAGGCAACATGATTCAAAAGCTTTCTTTCAAGAAAACAACAAAGT
CTTAGGTTATGAAGAGACGTAAGAGATGTAATTTTTCAACTTTTTAATTC
CAGTCGCCAAAAAAAGAGACTCACACTACAAAACCAATGTACCATCCATC
ACACCATTTTGTTTACCCAACCGTTACATCAACGCCACCAGTACAATCAC
ACATCAGTCCTTACCAACAGGGCGGTGCTGGTAACATGCAGTTTTATTAT
CCCCCTGTTTACACTACAAACCAACCTTTCAACTACCAAGGTCCTTATTA
CACCCAATCACCTGTACCTTATTACGAAAATGGACAAGCGTATTTTTTAA
AGCCCGTGACAAACTATGGTGCGCCTCAAACCATGTATTTACCTGGATCG
CTAACGGTAGCTTGAATATTTGAAATGTGGATGGGGCTTTATGATTTTTA
GTAGTTTTAGCCTGAGGATTGCAGGTTCATGAATGAGGAATCGAGACTAT
TGAACATAATATGTAAGAAAAAAAGAAAACTCTGTTGATTTGGTGATTTT
TAAACAGAGAGTTAGAGAGGGTTGACTCAAAAAAAAACTTGCTGATTTAT
GTATAATTGACGAAAATTTATTTGAAACTTTATTTTAGAAGAGGAATTTT
GTATATGATTTGTTTTGTTTTTTTTCCACTTTATCAATTACATTGCAGCT
ATTTTTAAGAAAACATATCATTTGAGAATTGAACTATACCTTTAGGCCAC
AATACTGTATTTTCCACGCTCCAAAAGATTTATAGCGAATTCGTTAACTT
ATGAACTAAAATCATATTTGACACCGTTGTAAAAGATTTAAAATTTAACA
GTGTAAGTTAGTTAGAATTCCAATAGAATAATACTTAGTCCAGGCCCATA
CTAATTATTACTCCATCACGAAAATGAAAATTTGTATAGTGATATTTAGA
GATTTGAAATCCAACTGTTAAAAAAATTGGTCCACAATTTTTTGGCAAAA
TTTGGCGGATACTCCACCGGGTCTGTGACACAGAGGTGTAATATTGTAAC
TCATATTTTACAGAATTTATTTTTTACAAAACGATACACAATTTTTATTT
ATCTCATATTACCGCTAATATTTTTATCATTTCCCCTTACATAATCAATA
CAAGCCGCTGAAATAGAAAAAATAAACGAGTCTGTAGTTATTCAAGACTT
TTGACTTCAGCTTACTCCATTTTTTTATTTCTCGAGCGTTACCTGGTTGG
ACTAGAGGCTTGACCATAAGATAATGTGTTTTTGTGTCATTTATTCTGAG
TTTTTGGTGTTAATATTTGTAACTATTAGTTTATATTATGTTTGTTCGTG
ATTTTTTCGTTTATAGAATAGAGATTTTACTTTTTATAAGATGGGTTAAT
TAGGATTTTCTGTAATTTTTGACGCATTATTTTTTAGTTTAATTTTCCAT
TGTTTTTTTTTCGAGTTTTTCATTTTGATTCTCATCATTTCATTTGTATT
TTATTTGTTAAACCTTTTATTCTCGTATAGCCAAAGGCTGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007396XLOC_007396Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013252-exon-sc0000163-1575043694:207412..207627TCONS_00013252-exon-sc0000163-1575043694:207412..207627Clytia hemisphaericaexon
TCONS_00013252-exon-sc0000163-1575043694:206327..206541TCONS_00013252-exon-sc0000163-1575043694:206327..206541Clytia hemisphaericaexon
TCONS_00013252-exon-sc0000163-1575043694:205259..205370TCONS_00013252-exon-sc0000163-1575043694:205259..205370Clytia hemisphaericaexon
TCONS_00013252-exon-sc0000163-1575043694:204743..204964TCONS_00013252-exon-sc0000163-1575043694:204743..204964Clytia hemisphaericaexon
TCONS_00013252-exon-sc0000163-1575043694:202785..204224TCONS_00013252-exon-sc0000163-1575043694:202785..204224Clytia hemisphaericaexon
TCONS_00013252-exon-sc0000163-1510915933:207412..207627TCONS_00013252-exon-sc0000163-1510915933:207412..207627Clytia hemisphaericaexon
TCONS_00013252-exon-sc0000163-1510915933:206327..206541TCONS_00013252-exon-sc0000163-1510915933:206327..206541Clytia hemisphaericaexon
TCONS_00013252-exon-sc0000163-1510915933:205259..205370TCONS_00013252-exon-sc0000163-1510915933:205259..205370Clytia hemisphaericaexon
TCONS_00013252-exon-sc0000163-1510915933:204743..204964TCONS_00013252-exon-sc0000163-1510915933:204743..204964Clytia hemisphaericaexon
TCONS_00013252-exon-sc0000163-1510915933:202785..204224TCONS_00013252-exon-sc0000163-1510915933:202785..204224Clytia hemisphaericaexon
TCONS_00013252-exon-sc0000163-1491911889:207412..207627TCONS_00013252-exon-sc0000163-1491911889:207412..207627Clytia hemisphaericaexon
TCONS_00013252-exon-sc0000163-1491911889:206327..206541TCONS_00013252-exon-sc0000163-1491911889:206327..206541Clytia hemisphaericaexon
TCONS_00013252-exon-sc0000163-1491911889:205259..205370TCONS_00013252-exon-sc0000163-1491911889:205259..205370Clytia hemisphaericaexon
TCONS_00013252-exon-sc0000163-1491911889:204743..204964TCONS_00013252-exon-sc0000163-1491911889:204743..204964Clytia hemisphaericaexon
TCONS_00013252-exon-sc0000163-1491911889:202785..204224TCONS_00013252-exon-sc0000163-1491911889:202785..204224Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000163supercontigsc0000163:202785..207627 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.201251	0.0984464	0.463033	0.53891	26.2752	25.5838	16.5284	18.9395	12.9883	13.8507	0.601284	0.825752	0.291257	0.829137	2.78823	2.2386	0.359781	0	1.31352	1.30959	0	0	0	0	0	0	0.270479	0.244198
Blast
[Close]
BLAST of TCONS_00013252 vs. Swiss-Prot (Human)
Match: BOLL (Protein boule-like OS=Homo sapiens GN=BOLL PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.496e-20
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:  268 SPDSSCTFGTHYPNRIFVGHLPGKANATDLADFFRTYGTVLEGKVVLDSFGRSRRFGFVTFATQDDVQKVLSKCP-FFFKGKKINVGPAVKK 540
            +P S+  +GT  PNRIFVG +  K N +DL  FF  YG+V E K+V D  G S+ +GFVTF TQ+D QK+L +     +K KK+N+GPA++K
Sbjct:   20 NPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRK 111
The following BLAST results are available for this feature:
BLAST of TCONS_00013252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BOLL2.496e-2048.91Protein boule-like OS=Homo sapiens GN=BOLL PE=1 SV... [more]
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