TCONS_00013276 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013276
Unique NameTCONS_00013276
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length784

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013276 ID=TCONS_00013276|Name=TCONS_00013276|organism=Clytia hemisphaerica|type=transcript|length=784bp
ACAAGATCGTTCACATTTTGATTCAAAAGCATGACATTACCCCCTGAATG
AACTAATGAAGAAGTAGGGGCTAAAGGGTATATAAAGAGCCACTGAGCAT
AGCCAAAACCTCAAGGAAATACATAAGAAGAAAACATGGCTCGTTTAGGT
TTGATCGCTTTGTTGGCAACTCTTGTAGCTTGCTCCTACGCTGCTAAGTT
CTCTGACTGTGGAGGATCACACGCTAGATTTTTAGCCATTGGTGTTCCAT
CAACAATCAAAGTTCAGGAAGGTTTCACCTTAAGCGTCCCATTCCATGCA
CGTGTAAGCAGGGCCTTCACTTCAACCAGCCTTCAAGTCAAATTAAAGAT
CGAAAGAAGTTTGGGATGGTTCGGTCATCAAAATATTTGCGGATTAACTG
GAGGCTTCTGtgaCCGAAGAGTCAACTGCGCACAATTGAATGATGTCGTC
AACAAATTCTTGCTCGCACCCAAACCACACTTCGAATGTCCCTTCACCGT
CGGAGATTATAACTTCCCTTTGAATATCAAAGTACCAAAACTCGATATCC
CAGGAGCCATCAAAGTCTTAGGAGCAGGTACATACAGATTGACCGCGGAA
TTCTACGACAATGGTCGAAAAACTGGATGTTTCAAACTTGAAGACGTCAG
AGTacaattttaaataattttttcgtgtaattttttaaatcgaAGTCTAT
TTTTTTAAGTACAGTTACAagatgaaattattttcaatacttATAACAAC
CCAATGTTAAACTATTTTGCCTAAGTTATGTCTC
Run BLAST on NCBI

protein sequence of TCONS_00013276-protein

>TCONS_00013276-protein ID=TCONS_00013276-protein|Name=TCONS_00013276-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MARLGLIALLATLVACSYAAKFSDCGGSHARFLAIGVPSTIKVQEGFTLS
VPFHARVSRAFTSTSLQVKLKIERSLGWFGHQNICGLTGGFCDRRVNCAQ
LNDVVNKFLLAPKPHFECPFTVGDYNFPLNIKVPKLDIPGAIKVLGAGTY
RLTAEFYDNGRKTGCFKLEDVRVQF
Run BLAST on NCBI

transcript from alignment at sc0000164:69100..72264+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013276 ID=TCONS_00013276|Name=TCONS_00013276|organism=Clytia hemisphaerica|type=transcript|length=3165bp|location=Sequence derived from alignment at sc0000164:69100..72264+ (Clytia hemisphaerica)
ACAAGATCGTTCACATTTTGATTCAAAAGCATGACATTACCCCCTGAATG
AACTAATGAAGAAGTAGGGGCTAAAGGGTATATAAAGAGCCACTGAGCAT
AGCCAAAACCTCAAGGAAATACATAAGAAGAAAACATGGCTCGTTTAGGT
TTGATCGCTTTGTTGGCAACTCTTGTAGCTTGCTCCTACGCTGCTAAGTT
CTCTGACTGTGGAGGTAAGCGATTATTGTGCTTTTCCTTGAATAATTTAA
CTTTTAGTTGGTATTGCTTCGAAAACTAAcagtatagaccttttcataaa
ttctagacgactaattcagacgtGGTagaaaagtaatggagggaacagtt
ttagtttatacaaactaaatcccgtaacaataatcgtattatcgtATAAC
GCtaatactactgtattacacgcattataaacgactccagtccaATATTT
TGCTAAATTCTAAGGCGGAAAAGCCTCTGTTTAAACTTCGccgagacgga
aatccgtccaAGAGGAAAGAAGTATGAACACTGAGCTATATCTAAAGTAA
AATATATTCGTTTTCTTTCAGGATCACACGCTAGATTTTTAGCCATTGGT
GTTCCATCAACAATCAAAGTTCAGGAAGGTTTCACCTTAAGCGTCCCATT
CCATGCACGTGTAAGCAGGGCCTTCACTTCAACCAGCCTTCAAGTCAAAT
TAAAGATCGAAAGAAGTTTGGGATGGTTCGGTCATCAAAATATTTGCGGA
TTAACTGGAGGCTTCTGGTGAGAATTTCCGTTTTCATAAAATACAGTACA
GTCTCGAacctttacaattagaatgtcTCTTGGAGTCGATCTTcaacgtg
gatagcccagtaaatCTAGGCAGTTATTCGATTATTTTCAcagggtccac
ggccagccggctcaGCTATCTATGagctgaacggaacattggaaggaacg
gggattcgaaccgcgaatCCCTGGTTTGAAACGCTGACACCTTTGACTAC
TTGGCCATCGCGCCATTCACTCATCCCTCCACTTAACACTGCCTCTTAAG
CCTTATAGAGACTCAACTGGATTATTTCGATAGTTTGAACCTAACATCAA
ATCATTAGCCCAATTTAATAATAGTTGAATCGAAAAGCTTAATGCAATTA
AAACACCCTCCGATCTCACTGACGATACAGCAAGAGTAGTTGATATTTTA
CGCGAAGAAGGTCGTCCAGGACTTTAAAAGACTGTCTTTATTGATATAGC
AAATCTGCTCGCGATTAGAGAGCAGGTAGGGGCAAAATCGGGGACTCGGG
GACTGATTATTCCTTAGAAATATTCTAATgatgatttcaatttttcagtg
aCCGAAGAGTCAACTGCGCACAATTGAATGATGTCGTCAACAAATTCTTG
CTCGCACCCAAACCACACTTCGAATGTCCCTTCACCGTCGGAGATTATAA
CTTCCCTTTGAATATCAAAGTACCAAAACTCGATATCCCAGGAGCCATCA
AAGTCTTAGGAGCAGTAAGTTTATGTTAACTTTTCTCCTACAgtgaactc
tcgctaattcgaaccgctattattcgaatctttctatagttCGAACTTAT
TCTTAGTCCCGTCAAATCctcgtaaaatgttttctataatctgaatcttt
ctgtaatttgatcaaataagattccccgttcgacTTCGAGTTAGCGAGAG
ATAATAATAAGTATCTgattaaccctttccgtgtcGATCCTTACTTTAGC
ACGTCAACCTATTTGCCACGACTTTTAAAAAGATGACAATTCTATTGCCG
AGAAAAATTATAatcaaaaatagattttcatgTGTTTCCTATTTTGCCAa
cgtcggatatatccgacaaaTTTTTCCCAGAAATATTGGCACTACTGGGA
CCAGCATTTAGCGCCAAAATGATGCTTTATCTTAGACAGTCTGGAAACGC
CAAAAATGGTCAGACCAGCTTGGTATTTGGCATACTTGTTCCTTGGGTTG
ATAGATAAGACCCTTGTTTTCatttatggaaaattttcaatttggagCTT
AGAGAGAGATTTAATGCATATCGGATATATCCAACACTGGGAAATATAGA
TAAAATGCGCGTGTCGAATATATCCGACAGTGGTACGGAAAGGGttaata
gcgagattatgtatcggagatattctacagctacggttgcggggctgcct
gTACGGGTCGTCaacaaaggcgacatgtcgttgtctactttgctctgtac
gggaaaaacaccaaaacaccgtataagcaaagtcgacataatgtcgtacg
tcaaatatcgaacttgctttcacccgccattacttgNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccgccat
tacttgccttactcgccatttccctcgccactttagctgtagccgtagag
aattccagatacataatctcgctaataaCATCAAGTCAGTACTAGAAATT
GGACAAATTTTGACTCTGGTAATCTCGATTGTCGTCACGCAGTCTCATCA
AATAACATTCAAATAAAAACGTCAATAACGTTCGCCCTGGGATCGATGGT
GCCTTGATACGACAATTTAAACCTTTTATTCGTAAGCGTTCTATTGGACC
TTTTTGCGATCCCTGGATTAATGCTCTGTTTCGACTACGGTCGACCCTCT
TCCTAATTTGATCTTTAAAGAACCCAGAATTCTCCCATAAAAGGGATGTC
ccaaaagattcgaattacagaggtttacattaaaaaaaacaccccctttG
TCACAGATTGGGTAAAccacccactggaaaaattggccatcgagtttttt
ttttttacccttACCGGTAGTCTGTTAATGAGAGGGATGTATAGAGAGTT
GAATCCCGTACCAAAAAAGCTAAGTATTTGAAATTGATTTGTATTTCTTC
TTCTCAGGGTACATACAGATTGACCGCGGAATTCTACGACAATGGTCGAA
AAACTGGATGTTTCAAACTTGAAGACGTCAGAGTacaattttaaataatt
ttttcgtgtaattttttaaatcgaAGTCTATTTTTTTAAGTACAGTTACA
agatgaaattattttcaatacttATAACAACCCAATGTTAAACTATTTTG
CCTAAGTTATGTCTC

Coding sequence (CDS) from alignment at sc0000164:69100..72264+

>TCONS_00013276 ID=TCONS_00013276|Name=TCONS_00013276|organism=Clytia hemisphaerica|type=CDS|length=2112bp|location=Sequence derived from alignment at sc0000164:69100..72264+ (Clytia hemisphaerica)
ATGGCTCGTTTAGGTTTGATCGCTTTGTTGGCAACTCTTGTAGCTTGCTC
CTACGCTGCTAAGTTCTCTGACTGTGGAGGATCACACGCTAGATTTTTAG
CCATTGGTGTTCCATCAACAATCAAAGTTCAGGAAGGTTTCACCTTAAGC
GTCCCATTCCATGCACGTGTAAGCAGGGCCTTCACTTCAACCAGCCTTCA
AGTCAAATTAAAGATCGAAAGAAGTTTGGGATGGTTCGGTCATCAAAATA
TTTGCGGATTAACTGGAGGCTTCTGtgaCCGAAGAGTCAACTGCGCACAA
TTGAATGATGTCGTCAACAAATTCTTGCTCGCACCCAAACCACACTTCGA
ATGTCCCTTCACCGTCGGAGATTATAACTTCCCTTTGAATATCAAAGTAC
CAAAACTCGATATCCCAGGAGCCATCAAAGTCTTAGGAGCAGGTACATAC
AGATTGACCGCGGAATTCTACGACAATGGTCGAAAAACTGGATGTTTCAA
ACTTGAAGACGTCAGAGTacaattttaaATGGCTCGTTTAGGTTTGATCG
CTTTGTTGGCAACTCTTGTAGCTTGCTCCTACGCTGCTAAGTTCTCTGAC
TGTGGAGGATCACACGCTAGATTTTTAGCCATTGGTGTTCCATCAACAAT
CAAAGTTCAGGAAGGTTTCACCTTAAGCGTCCCATTCCATGCACGTGTAA
GCAGGGCCTTCACTTCAACCAGCCTTCAAGTCAAATTAAAGATCGAAAGA
AGTTTGGGATGGTTCGGTCATCAAAATATTTGCGGATTAACTGGAGGCTT
CTGtgaCCGAAGAGTCAACTGCGCACAATTGAATGATGTCGTCAACAAAT
TCTTGCTCGCACCCAAACCACACTTCGAATGTCCCTTCACCGTCGGAGAT
TATAACTTCCCTTTGAATATCAAAGTACCAAAACTCGATATCCCAGGAGC
CATCAAAGTCTTAGGAGCAGGTACATACAGATTGACCGCGGAATTCTACG
ACAATGGTCGAAAAACTGGATGTTTCAAACTTGAAGACGTCAGAGTacaa
ttttaaATGGCTCGTTTAGGTTTGATCGCTTTGTTGGCAACTCTTGTAGC
TTGCTCCTACGCTGCTAAGTTCTCTGACTGTGGAGGATCACACGCTAGAT
TTTTAGCCATTGGTGTTCCATCAACAATCAAAGTTCAGGAAGGTTTCACC
TTAAGCGTCCCATTCCATGCACGTGTAAGCAGGGCCTTCACTTCAACCAG
CCTTCAAGTCAAATTAAAGATCGAAAGAAGTTTGGGATGGTTCGGTCATC
AAAATATTTGCGGATTAACTGGAGGCTTCTGtgaCCGAAGAGTCAACTGC
GCACAATTGAATGATGTCGTCAACAAATTCTTGCTCGCACCCAAACCACA
CTTCGAATGTCCCTTCACCGTCGGAGATTATAACTTCCCTTTGAATATCA
AAGTACCAAAACTCGATATCCCAGGAGCCATCAAAGTCTTAGGAGCAGGT
ACATACAGATTGACCGCGGAATTCTACGACAATGGTCGAAAAACTGGATG
TTTCAAACTTGAAGACGTCAGAGTacaattttaaATGGCTCGTTTAGGTT
TGATCGCTTTGTTGGCAACTCTTGTAGCTTGCTCCTACGCTGCTAAGTTC
TCTGACTGTGGAGGATCACACGCTAGATTTTTAGCCATTGGTGTTCCATC
AACAATCAAAGTTCAGGAAGGTTTCACCTTAAGCGTCCCATTCCATGCAC
GTGTAAGCAGGGCCTTCACTTCAACCAGCCTTCAAGTCAAATTAAAGATC
GAAAGAAGTTTGGGATGGTTCGGTCATCAAAATATTTGCGGATTAACTGG
AGGCTTCTGtgaCCGAAGAGTCAACTGCGCACAATTGAATGATGTCGTCA
ACAAATTCTTGCTCGCACCCAAACCACACTTCGAATGTCCCTTCACCGTC
GGAGATTATAACTTCCCTTTGAATATCAAAGTACCAAAACTCGATATCCC
AGGAGCCATCAAAGTCTTAGGAGCAGGTACATACAGATTGACCGCGGAAT
TCTACGACAATGGTCGAAAAACTGGATGTTTCAAACTTGAAGACGTCAGA
GTacaattttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007415XLOC_007415Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013276-exon-sc0000164-1491911889:69100..69313TCONS_00013276-exon-sc0000164-1491911889:69100..69313Clytia hemisphaericaexon
TCONS_00013276-exon-sc0000164-1510915933:69100..69313TCONS_00013276-exon-sc0000164-1510915933:69100..69313Clytia hemisphaericaexon
TCONS_00013276-exon-sc0000164-1575043694:69100..69313TCONS_00013276-exon-sc0000164-1575043694:69100..69313Clytia hemisphaericaexon
TCONS_00013276-exon-sc0000164-1491911889:69671..69866TCONS_00013276-exon-sc0000164-1491911889:69671..69866Clytia hemisphaericaexon
TCONS_00013276-exon-sc0000164-1510915933:69671..69866TCONS_00013276-exon-sc0000164-1510915933:69671..69866Clytia hemisphaericaexon
TCONS_00013276-exon-sc0000164-1575043694:69671..69866TCONS_00013276-exon-sc0000164-1575043694:69671..69866Clytia hemisphaericaexon
TCONS_00013276-exon-sc0000164-1491911889:70448..70613TCONS_00013276-exon-sc0000164-1491911889:70448..70613Clytia hemisphaericaexon
TCONS_00013276-exon-sc0000164-1510915933:70448..70613TCONS_00013276-exon-sc0000164-1510915933:70448..70613Clytia hemisphaericaexon
TCONS_00013276-exon-sc0000164-1575043694:70448..70613TCONS_00013276-exon-sc0000164-1575043694:70448..70613Clytia hemisphaericaexon
TCONS_00013276-exon-sc0000164-1491911889:72057..72264TCONS_00013276-exon-sc0000164-1491911889:72057..72264Clytia hemisphaericaexon
TCONS_00013276-exon-sc0000164-1510915933:72057..72264TCONS_00013276-exon-sc0000164-1510915933:72057..72264Clytia hemisphaericaexon
TCONS_00013276-exon-sc0000164-1575043694:72057..72264TCONS_00013276-exon-sc0000164-1575043694:72057..72264Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013276-proteinTCONS_00013276-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000164supercontigsc0000164:69100..72264 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.185101	0	0	0.136695	0	0	0	0	0	0.0644027	0	0.0821843	177.517	203.744	93.2996	192.204	43.9097	36.1757	1184.08	1068.08	261.47	247.914	737.511	813.739	829.388	884.289	1.09985	1.98641	33.6935	39.5613
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028996GM2-AP
Vocabulary: Biological Process
TermDefinition
GO:0006689ganglioside catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008047enzyme activator activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006689 ganglioside catabolic process
molecular_function GO:0008047 enzyme activator activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013276 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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