TCONS_00013290 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013290
Unique NameTCONS_00013290
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length792

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013290 ID=TCONS_00013290|Name=TCONS_00013290|organism=Clytia hemisphaerica|type=transcript|length=792bp
GCAAAACCTTCAGAGAAaggacagatccagaaatacaTCGCAGAACTTGG
CCGTGCAAAACAACAACATAAAGAGTTGGTGACGGACTACAAAACGAACA
CACAACATGTGATGAACGTCGACCAAGACATTGGTGGTCCTCGACTAAGA
GACATCATCGACCGTGATGGCGAACCGACCAAAGAACAAACATTGAATAA
TCTTTTACGGCGATTGGAAGAAAAACGTTCGTCCATCGGAAGGGCGCATG
AAATACTGgCAATGTCAAACGAACAGTTGAAGGAAGAGAAGTTAGCTGTT
CAAAAAGCTCTACTACAATACGAAAACATTCATGGAAGACCGgcaTCAAA
AGAAGATAAAACGCTCATGAGACCAATATACGACCGTTATCGAAAAATCA
AACGACTCATTGCTGCTTATAAGGACGATGGGACGATAGAGGAGCAAGAT
AGCAACATCAAAACGATCTACCAAAGCGATAATAATGAAGTGTCGGATTT
CGGAAGATCACGTGACCGTGCTAATTCCACAACACCTGAAAACGTTCTAA
CGGACGACCAAACACCTCATCAACACATCATGGATGATTCCACTCTTCCG
GGTGATACCTTCTCCGTAACAAACCGGTTACAGTATACTCCAGAACCCTT
CTCACCGACGCCGCTCGAATCGCTGCAAAATTTCGATGAATCAGTNGGAA
CCCTTCTCACCGACGCCGCTTGAATCGCTGCAGAATTTTGATGAATCAGT
ATTACATAATGCTTCGATGAGCGAGTTAATGGAACAGCTGAA
Run BLAST on NCBI

transcript from alignment at sc0000164:100001..106582-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013290 ID=TCONS_00013290|Name=TCONS_00013290|organism=Clytia hemisphaerica|type=transcript|length=6582bp|location=Sequence derived from alignment at sc0000164:100001..106582- (Clytia hemisphaerica)
GCAAAACCTTCAGAGAAAGGACAGATCCAGAAATACATCGCAGAACTTGG
CCGTGCAAAACAACAACATAAAGGTTTGTAGCAAAGCTACTTGTTTGTAA
AAAACGTTGATAATTTCCGGCTTAAGTGGCTTCTTGCAGGTCAAACTCTG
TAGGATTGATGACGAAGCATTGTGGGGAAGAGTGCTTACTGTTTAATTCT
CGACTCTTTATATGGATTGCAGCACTCTCCACCATGGGTGAATTCTCCTC
TCCATCTTCTGATGTAGGTTAATTTGAATAAAATGAATTTCCTTTCCCTC
CAGATCGAACAGCTTCGATCAGATTACGAAATCTGTCCCCTACTGTGAAC
GATCTTTCTCCAACAGTGATAAATTTAGCAATTCATTTTCACTGACAAAA
ACTTTAAAACAAATCTTTTGCAATTTTGTAACAATTTTCACGGATATCAA
TTATCCTCCTAAGCAGGGTGTTTTCAATAAGAGGGTGATTGATTCAGAGT
AAAAATGCGCAGCTGGCTTTTATTTTATCAGTTTTCTCTTTAATTCTGTA
ATTTATCGACTGATCTTTTCGTCTACTTTTTAATTAGCAATCAATTTGCT
AACATCGTTCGCTTTCGAACCTTCCGAGTTTTTCTTGTTCCTGTTTGGTT
TTGATTCACTTTGGTTATATACTCAAAGGTGCTTATTGCAACCACTTTTG
AAACTGTTTTGAAGTTTACGTTTCAAAGAATTCGTTACTATTTGTCCTGG
GAATAATTTTCATAATTGATGGAAAATGTTGACCTACCTTGTTGAAGATA
GAGTTCATGGAATATTTCCGAGTGAGTACATCAGAGAATTACCTTTTTAC
TGATTTTGTAACCCTGTAGAAACTTGATTGACTTTTGTAAGACGTTGCTT
TAGACATTTCGAACTTAGAACTCTGTATTAACCCAATGAAGGAATACAGA
ACTCAATAACTTACCTAGTAAATCAACCTCAATTTCATTCTGTAGAGTTG
GTGACGGACTACAAAACGAACACACAACATGTGATGAACGTCGACCAAGA
CATTGGTGGTCCTCGACTAAGAGGTAAAAACGATAAATTATGTAAACGGG
ATGAATTTGCTCGAAATTGTTTTGGTGTCTATGAATCAATGTTTTCCAAC
CACTTATTCTTTTATGGAAGGCAAAGCGCCCCCTCCCCTGTGCTTGCTAG
TTCTAAATGTGCTTATGACGTGACATTTTCATACTATGCTAAAAGACATG
ACAATAAAACAAAATGATCTCAAAATCTTTAGTTCAAACACCTCTAGACC
GGAACATGGTCTTTGGTCTTTTCACCATCCCTGCTTTTCTCATTCAGACA
TCATCGACCGTGATGGCGAACCGACCAAAGAACAAACATTGAATAATCTT
TTACGGCGATTGGAAGAAAAACGTTCGTCCATCGGAAGGGCGCATGAAAT
ACTGGTACGTTTGACTGATTTTGAATATCCAACAACTCTGGATATAATTT
TTAGAACTTTCCAATAATACCCCCTTTCTCGATGCCGAAAAACAGGATCT
TTAAATAGGATCAGAGCATCCATTAGTTAAATTTTAATATTGAAGAGTTG
AGAGCCCCAAAATATTTGTCCTCTATTGAAGTATTGGAACTTCCTAGGGC
CTTGGTGAACCACTGCCTATCTGACGTTGTAATTTTGTAAATTGCAGTCT
CGAGTTTATTCCACTGTCAAAATACTTAAACAGCATAAAGAGCCACGTTT
TTTACACCATCATTTTTATGAGCAGAAGCAAACACATACACCAGACTCTC
GCTTATTTGAACTAATACTATTCGAATATAGTTTGAACCGTAAATCTCGA
GTCAAGGAAAACCTTCTTAGAATACTTCCTATAATTCGATTCTCTCTGTA
ATTCGAACAAATAAGATTCCCCGTTCAAGTTCGAATTAGCGGGAGTCAAC
TGTATGATAATTAACACTCTTCGAAATTCACTTTTTTCAGGCAATGTCAA
ACGAACAGTTGAAGGAAGAGAAGTTAGCTGTTCAAAAAGCTCTACTACAA
TACGAAAACATTCATGGAAGACCGGTATGTCATCCTTCTTTCTACCCAAT
AATCCTGATGCGTAGTTTTTATGGCTTTGAAAGTAGGTGACAGCCTAATC
TTAGCTATATAATCTTTTTAGACAAATGCTCTTTTTACAAGAACACGGGT
CTGAAATTTAATCTAAAACCTAGCAACAAAATAAGACGAATCGGACAGCG
ATCTAAAGAAATTTCACAAATGACCCTCTTAAGCTATTAAATAAACAAAC
TAAGCGTATTAGAACACCTTCAGAACAAGCCTAAAAATTTCAAAATATAA
GAACTTGCTGAGGCTGGGCGAAGATTTTTAAACATTATTTTTAATTGGAA
TATTTTTCTTTTTTTCAGGCATCAAAAGAAGATAAAACGCTCATGAGACC
AATATACGACCGTTATCGAAAAATCAAACGACTCATTGCTGCTTATAAGG
TAGGTAAAGTCAATGCACTAAACATGTTCCTTAAGTGGATTAAAGGCCGG
TCTCCACTTGCGCGCGCTTCAATCGCTCTTCTTCGAGCAAAGCTTCCACG
CTATTGGTCAAAAGAAAAATGAAGCAACTCCATTGGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAAGCAACTCCATTGGTGCGATATGACGTAACGATCGCGC
GCTTGAAAAAAAAGTTGAAATACATTCAACTTTTTTTCCAAGCGCGCGCT
GCGTTTTTATAACGTAATCTTTTCTCCAAGCAAAAATGATTGAAGCCAAA
GTTGCGATCGCAGCGCGCGCAAGTGGAGACCGGCCTTAAATCCCGCATGG
ATTTATTTTCGCGAAATTTATAGTCCTCGCGAAAAATTTAAAATCAGCAA
TTATGCAAAAACTCCTGGGAAAATGAAAGAAATTAGGTGAAAAATAGGCC
GATTCGCGAAATTTTGTCCACGCAAAAATTTTAGATTCTCGATTCACAAA
AAAATTTCACGCCAAATTTAATCCACTCAACGTATTCAACAAGAAATATT
GGTAATTGCTAAAAAGTGCATGAAAATTATTTTATAAATGAGCTTTATAA
ATCCTGGAAGCAGTTTCTCAATTCCGACCAAGCAAGATCTTTCGAGTTTT
TTAGAAAATGGTTCCCTGATTGTACCACTACTCGATATAGGTATAAATGC
ACTCAGAGCGCTAGATCTACATTTTCTGGAGTCCTCGATGATGTAGCGCC
GTTTACCATTTATTTATGTGCAATGACTTCTTTGCGGGTATCACTTTCAA
AAACTCTAAATCAAAGATGTCGGAAATAGTTTAGTTTAGGGTTTATAAGT
GTCAGTGGGTTTTACCCGTCTTAAATACTTTTAAACCTCAAGTGAATAAT
ATTTAGTTTTTTAACACTTTTTGAATTCACAGGACGATGGGACGATAGAG
GAGCAAGATAGCAACATCAAAACGATCTACCAAAGCGATAATAATGGTAT
GTAAGCACATTTTTATAAGAACATCCAAACTTTTTGAAGCCTTTGGATTT
TCTCAACTTTTATAAGTTTTAAGACTAAAACTTTTCTTAAAATGTTCTTA
TTTTTAAAATTTGTGAGTATTTATTAAAAAATGGCGAAATAAAGTTATTT
GGGAAAAAACTGATTTGACGTATTGTCCTTTACGGAAGACTTATTTTCAT
TCAGTGTACACGGCTAATAATGTGTTTTTGGACCTACCCCGGTGGGCTGT
AGGTCCTATAAATTAACCTCTGTTCGTCCGTTCGTTCGTCCGTTTGTTAC
TAGCTTTTCTCGGGATTGGCTCATTAGTTTTTCCTAATTTTTGGCACAAA
GATGCAAAATGGTAATGCCCAAAATGTGACGGAGCCCGATTTTCGAAGAA
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTAAACGATATA
TTTTCTGACTGATTTTTTTCTCCTCGCATTGCTATCTAACTTTCATCATC
AGGTAGGTCCATTCAGCATCTAGCTTGTTGTTTTTGAAAGAAAAAGATAT
AGTGTATCTTTGACAGCAAAGAATATCTAATGTTTTTCTATTATCCTCAT
TCAAATCTCTTTTTAACAGAAGTGTCGGATTTCGGAAGATCACGTGACCG
TGCTAATTCCACAACACCTGAAAACGTTCTAACGGACGACCAAACACCTC
ATCAACACATCATGGATGATTCCACTCTTCCGGGTGATACCTTCTCCGTA
ACAAACCGGTTACAGTATACTCCAGAACCCTTCTCACCGACGCCGCTCGA
ATCGCTGCAAAATTTCGATGAATCAGTNGGAACCCTTCTCACCGACGCCG
CTTGAATCGCTGCAGAATTTTGATGAATCAGTATTACATAATGCTTCGAT
GTAAGAGATCTCTAATGTTCTTCGTTGTAATTTTTCAATCCTGGGTTAGA
GAAATGTAACTTTTTATGAATTTTCTAACCCCGCCCCTGCAGAATTACGT
CAATATTTTCCATTACTTGCATTTCTAAAACTTCGAGAATTGTAAGAAAT
ATCCTTCCATGGTGGCAGCTGGCATACAAAGTTGTTTCAACGTTCATCTA
ATGTTTACAGGATCTATATAACGTTAGATTGACGTTGTGTGCCAGCTGTG
AAACTGGTTTTAAAATTTGATTAAATTTTTCTGATGATGAAACTTTTTGT
TGTTACAGGAGCGAGTTAATGGAACAGCTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007427XLOC_007427Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013290-exon-sc0000164-1575043694:106510..106582TCONS_00013290-exon-sc0000164-1575043694:106510..106582Clytia hemisphaericaexon
TCONS_00013290-exon-sc0000164-1575043694:105510..105587TCONS_00013290-exon-sc0000164-1575043694:105510..105587Clytia hemisphaericaexon
TCONS_00013290-exon-sc0000164-1575043694:105129..105235TCONS_00013290-exon-sc0000164-1575043694:105129..105235Clytia hemisphaericaexon
TCONS_00013290-exon-sc0000164-1575043694:104509..104592TCONS_00013290-exon-sc0000164-1575043694:104509..104592Clytia hemisphaericaexon
TCONS_00013290-exon-sc0000164-1575043694:104084..104164TCONS_00013290-exon-sc0000164-1575043694:104084..104164Clytia hemisphaericaexon
TCONS_00013290-exon-sc0000164-1575043694:102487..102550TCONS_00013290-exon-sc0000164-1575043694:102487..102550Clytia hemisphaericaexon
TCONS_00013290-exon-sc0000164-1575043694:100333..100613TCONS_00013290-exon-sc0000164-1575043694:100333..100613Clytia hemisphaericaexon
TCONS_00013290-exon-sc0000164-1575043694:100001..100024TCONS_00013290-exon-sc0000164-1575043694:100001..100024Clytia hemisphaericaexon
TCONS_00013290-exon-sc0000164-1510915933:106510..106582TCONS_00013290-exon-sc0000164-1510915933:106510..106582Clytia hemisphaericaexon
TCONS_00013290-exon-sc0000164-1510915933:105510..105587TCONS_00013290-exon-sc0000164-1510915933:105510..105587Clytia hemisphaericaexon
TCONS_00013290-exon-sc0000164-1510915933:105129..105235TCONS_00013290-exon-sc0000164-1510915933:105129..105235Clytia hemisphaericaexon
TCONS_00013290-exon-sc0000164-1510915933:104509..104592TCONS_00013290-exon-sc0000164-1510915933:104509..104592Clytia hemisphaericaexon
TCONS_00013290-exon-sc0000164-1510915933:104084..104164TCONS_00013290-exon-sc0000164-1510915933:104084..104164Clytia hemisphaericaexon
TCONS_00013290-exon-sc0000164-1510915933:102487..102550TCONS_00013290-exon-sc0000164-1510915933:102487..102550Clytia hemisphaericaexon
TCONS_00013290-exon-sc0000164-1510915933:100333..100613TCONS_00013290-exon-sc0000164-1510915933:100333..100613Clytia hemisphaericaexon
TCONS_00013290-exon-sc0000164-1510915933:100001..100024TCONS_00013290-exon-sc0000164-1510915933:100001..100024Clytia hemisphaericaexon
TCONS_00013290-exon-sc0000164-1491911889:106510..106582TCONS_00013290-exon-sc0000164-1491911889:106510..106582Clytia hemisphaericaexon
TCONS_00013290-exon-sc0000164-1491911889:105510..105587TCONS_00013290-exon-sc0000164-1491911889:105510..105587Clytia hemisphaericaexon
TCONS_00013290-exon-sc0000164-1491911889:105129..105235TCONS_00013290-exon-sc0000164-1491911889:105129..105235Clytia hemisphaericaexon
TCONS_00013290-exon-sc0000164-1491911889:104509..104592TCONS_00013290-exon-sc0000164-1491911889:104509..104592Clytia hemisphaericaexon
TCONS_00013290-exon-sc0000164-1491911889:104084..104164TCONS_00013290-exon-sc0000164-1491911889:104084..104164Clytia hemisphaericaexon
TCONS_00013290-exon-sc0000164-1491911889:102487..102550TCONS_00013290-exon-sc0000164-1491911889:102487..102550Clytia hemisphaericaexon
TCONS_00013290-exon-sc0000164-1491911889:100333..100613TCONS_00013290-exon-sc0000164-1491911889:100333..100613Clytia hemisphaericaexon
TCONS_00013290-exon-sc0000164-1491911889:100001..100024TCONS_00013290-exon-sc0000164-1491911889:100001..100024Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000164supercontigsc0000164:100001..106582 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.89459	6.9205	5.34295	4.43564	18.2505	14.3109	17.4655	15.1678	12.0295	18.6998	12.3898	14.6358	17.3121	18.7027	5.85663	9.73173	16.9006	22.3476	16.4337	18.5544	15.1447	17.7453	6.5527	11.1224	58.7251	36.7104	9.07414	3.74	6.5801	8.14818
Blast
[Close]
BLAST of TCONS_00013290 vs. Swiss-Prot (Human)
Match: FA13A (Protein FAM13A OS=Homo sapiens GN=FAM13A PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.506e-16
Identity = 38/89 (42.70%), Postives = 68/89 (76.40%), Query Frame = 1 
Query:  148 RDIIDRDGEPTKEQTXXXXXXXXXXKRSSIGRAHEILAMSNEQLKEEKLAVQKALLQYENIHGRPASKEDKTLMRPIYDRYRKIKRLIA 414
            ++++D+  +P+ E TL ++ R+L+EKR+   R  +I  M+ +Q+  EK+A+QKALL YE+IHGRP +K ++ +M+P+YDRYR +K++++
Sbjct:  758 QELVDKAIKPSVEATLESIQRKLQEKRAESSRPEDIKDMTKDQIANEKVALQKALLYYESIHGRPVTKNERQVMKPLYDRYRLVKQILS 846
The following BLAST results are available for this feature:
BLAST of TCONS_00013290 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FA13A8.506e-1642.70Protein FAM13A OS=Homo sapiens GN=FAM13A PE=1 SV=2[more]
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