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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013294 ID=TCONS_00013294|Name=TCONS_00013294|organism=Clytia hemisphaerica|type=transcript|length=1324bpRun BLAST on NCBI protein sequence of TCONS_00013294-protein >TCONS_00013294-protein ID=TCONS_00013294-protein|Name=TCONS_00013294-protein|organism=Clytia hemisphaerica|type=polypeptide|length=419bp MASSEAMKTLLSDDVPYRARRPMTAMNNRTSYNNSMQNRRPVTGHHCSRDRun BLAST on NCBI transcript from alignment at sc0000164:194385..199049- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013294 ID=TCONS_00013294|Name=TCONS_00013294|organism=Clytia hemisphaerica|type=transcript|length=4665bp|location=Sequence derived from alignment at sc0000164:194385..199049- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000164:194385..199049- >TCONS_00013294 ID=TCONS_00013294|Name=TCONS_00013294|organism=Clytia hemisphaerica|type=CDS|length=10056bp|location=Sequence derived from alignment at sc0000164:194385..199049- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013294 vs. Swiss-Prot (Human)
Match: LOXH1 (Lipoxygenase homology domain-containing protein 1 OS=Homo sapiens GN=LOXHD1 PE=2 SV=3) HSP 1 Score: 147.517 bits (371), Expect = 2.158e-37 Identity = 87/278 (31.29%), Postives = 143/278 (51.44%), Query Frame = 3
Query: 534 YSVTVITGDKRNAGTNANVFINLRGT-LGRINKQHLMKELDADAMEIDDDETFQFKRATSERFTVSGVDIGDLISVEIEHDGVERNQSWFLEEVSVKKYETKQTWVLPCKKWLSLYEDDCQVKRILKPLPPEQARPE-----------------------RVVYEVEVLTGDVRGAGTDAHVFITIYGERGNTGRVQLVNR--NVDTFERSRTDLFKIKVKYLGKLQRILIEHDNTGFAAGWFLDRVTITNSDSPKEKWYFVCNKWLSKDDGDGEISR 1289
Y V V+TG+ AGT+ANV++ + G G ++ L K D++ +F++ ++ FT+ +D+G L + I HD WFL+ + + + T+ PC++WL++ EDD Q+ R L P+ P+ + V + TG + AGTDA+VFIT++G + +TG L + N D FER ++F ++ LG L ++ + HDNTG A GWF+D V + ++ S + F C +WL+K++ DG I R
Sbjct: 746 YEVQVVTGNVPKAGTDANVYLTIYGEEYGDTGERPLKKS----------DKSNKFEQGQTDTFTIYAIDLGALTKIRIRHDNTGNRAGWFLDRIDITDMNNEITYYFPCQRWLAVEEDDGQLSRELLPVDESYVLPQSEEGRGGGDNNPLDNLALEQKDKSTTFSVTIKTGVKKNAGTDANVFITLFGTQDDTGMTLLKSSKTNSDKFERDSIEIFTVETLDLGDLWKVRLGHDNTGKAPGWFVDWVEV-DAPSLGKCMTFPCGRWLAKNEDDGSIIR 1012 HSP 2 Score: 140.198 bits (352), Expect = 4.538e-35 Identity = 86/283 (30.39%), Postives = 143/283 (50.53%), Query Frame = 3
Query: 525 YIAYSVTVITGDKRNAGTNANVFINLRGTLGRINKQHLMKELDADAMEIDDDETFQFKRATSERFTVSGVDIGDLIS-VEIEHDGVERNQSWFLEEVSVKKY----ETKQTWVLPCKKWLSLYEDDCQVKRILKPLPPEQARPER--------------------VVYEVEVLTGDVRGAGTDAHVFITIYGERGNTGRVQL--VNRNVDTFERSRTDLFKIKVKYLGKLQRILIEHDNTGFAAGWFLDRVTITNSDSPKEKWYFVCNKWLSKDDGDGEISRL 1292
++ Y +T+ T D AGT+AN+FI + G +Q + + + F+R ++ RF V D+G++I + I H+ N W V +++ + +T PC +WL+ EDD K+ ++ L P E+ V+Y V++ TG++ GAGTDA V+ITIYG+ G+TG L + FER D F I+ LG + +I + HDN+ + A W++++V I N D+ ++++ F+C +WLS DG + RL
Sbjct: 1027 FVPYEITLYTSDVFAAGTDANIFIIIYGCDAVCTQQKYLCTNKREQKQF-------FERKSASRFIVELEDVGEIIEKIRIGHNNTGMNPGWHCSHVDIRRLLPDKDGAETLTFPCDRWLATSEDD---KKTIRELVPYDIFTEKYMKDGSLRQVYKEVEEPLDIVLYSVQIFTGNIPGAGTDAKVYITIYGDLGDTGERYLGKSENRTNKFERGTADTFIIEAADLGVIYKIKLRHDNSKWCADWYVEKVEIWN-DTNEDEFLFLCGRWLSLKKEDGRLERL 1298 HSP 3 Score: 133.265 bits (334), Expect = 7.786e-33 Identity = 87/255 (34.12%), Postives = 135/255 (52.94%), Query Frame = 3
Query: 534 YSVTVITGDKRNAGTNANVFINLRGTLGRINKQHLMKELDADAMEIDDDETFQFKRATSERFTVSGVDIGDLISVEIEHDGVERNQSWFLEEVSVKKYETKQT--WVLPCKKWLSLYEDDCQVKRILKPLPPEQARPERVVYEVEVLTGDVRGAGTDAHVFITIYGERGNT-GRVQLVNRN--VDTFERSRTDLFKIKVKYLGKLQRILIEHDNTGFAAGWFLDRVTITNSDSPKEKWYFVCNKWLSKDDGDGEI 1283
Y VTV TG+ AGT+ANV++ L G +G ++ L + T F++ ++ FT+ V + ++ V I HDG W+L+ V V++ ++ PC +WL +DD Q+ R L P A + Y + + TGDV GA TD+ V+I +YG++ +T +V LV+ N D FER R D F ++ +G + R++I HD+TG A WFL V I K+ + F N+WL K+ DG +
Sbjct: 277 YHVTVCTGELEGAGTDANVYLCLFGDVGDTGERLLYN---------CRNNTDLFEKGNADEFTIESVTMRNVRRVRIRHDGKGSGSGWYLDRVLVREEGQPESDNVEFPCLRWLDKDKDDGQLVRELLP-SDSSATLKNFRYHISLKTGDVSGASTDSRVYIKLYGDKSDTIKQVLLVSDNNLKDYFERGRVDEFTLETLNIGNINRLVIGHDSTGMHASWFLGSVQIRVPRQGKQ-YTFPANRWLDKNQADGRL 520 HSP 4 Score: 132.494 bits (332), Expect = 1.433e-32 Identity = 81/256 (31.64%), Postives = 129/256 (50.39%), Query Frame = 3
Query: 534 YSVTVITGDKRNAGTNANVFINLRGTLGRINKQHLMKELDADAMEIDDDETFQFKRATSERFTVSGVDIGDLISVEIEHDGVERNQSWFLEEVSVKKYETKQTWVLPCKKWLSLYEDDCQVKRILKPLPPEQARPERVV-YEVEVLTGDVRGAGTDAHVFITIYGERGNTGRVQLVN--RNVDTFERSRTDLFKIKVKYLGKLQRILIEHDNTGFAAGWFLDRVTITNSDSPK-EKWYFVCNKWLSKDDGDGEISR 1289
+S+ V T D + AGTN+ +FI + G GR D + ++ + + FK E+F + D+G + + HD W LE +++ K + C +WL EDD ++ R + P R + Y V V TG++ GAGTDA+V++ ++G+ G+TG L N N D FE+ D F I+ + ++R+ I HD G +GW+LDRV + P+ + F C +WL KD DG++ R
Sbjct: 149 WSLWVWTTDLKKAGTNSPIFIQIYGQKGR-----------TDEILLNPNNKW-FKPGIIEKFRIELPDLGRFYKIRVWHDKRSSGSGWHLERMTLMNTLNKDKYNFNCNRWLDANEDDNEIVREMTAEGPTVRRIMGMARYHVTVCTGELEGAGTDANVYLCLFGDVGDTGERLLYNCRNNTDLFEKGNADEFTIESVTMRNVRRVRIRHDGKGSGSGWYLDRVLVREEGQPESDNVEFPCLRWLDKDKDDGQLVR 392 HSP 5 Score: 132.109 bits (331), Expect = 1.884e-32 Identity = 85/258 (32.95%), Postives = 130/258 (50.39%), Query Frame = 3
Query: 522 VYIAYSVTVITGDKRNAGTNANVFINLRGTLGRINKQHLMKELDADAMEIDDDETFQFKRATSERFTVSGVDIGDLISVEIEHDGVERNQSWFLEEVSVKKYETKQTWVLPCKKWLSLYEDDCQVKRILKPLPPEQARPERVVYEVEVLTGDVRGAGTDAHVFITIYGERGNTGRVQL-VNRNVDTFERSRTDLFKI-KVKYLGKLQRILIEHDNTGFAAGWFLDRVTITNSDSPKEKWYFVCNKWLSKDDGDGEISR 1289
V + Y +TV TGD GT++N+F+ L G G + L D + +F+R ++ F + +DI + I DG+ WFLE + +K T + WLS + + + + E+ E Y V V T D+ GAGTDA+VFI I+GE G++G + L + N + FER+ TD F + LG L ++ + HDN G GW L V + + +S E ++F C+ WLSK +GDG+ R
Sbjct: 1478 VKVLYEMTVWTGDVVGGGTDSNIFMTLYGINGSTEEMQL------------DKKKARFEREQNDTFIMEILDIAPFTKMRIRIDGLGSRPEWFLERILLKNMNTGDLTMFYYGDWLSQRKGKKTLVCEMCAVIDEEEMMEWTSYTVAVKTSDILGAGTDANVFIIIFGENGDSGTLALKQSANWNKFERNNTDTFNFPDMLSLGHLCKLRVWHDNKGIFPGWHLSYVDVKD-NSRDETFHFQCDCWLSKSEGDGQTVR 1722 HSP 6 Score: 121.324 bits (303), Expect = 5.340e-29 Identity = 89/262 (33.97%), Postives = 129/262 (49.24%), Query Frame = 3
Query: 534 YSVTVITGDKRNAGTNANVFINLRGTLGRINKQHLMKELDADAMEIDDDETFQFKRATSERFTVSGVDIGDLISVEIEHDGVERNQSWFLEEVSVKKYETKQTWVLPCKKWLSLYEDDCQVKRIL--KPLPPEQARPERVVYEVEVLTGDVRGAGTDAHVFITIYGERGNTGRVQLVNRN----VDTFERSRTDLFKIKVKYLGK-LQRILIEHDNTGFAAGWFLDRVTITNSDSPK---EKWYFVCNKWLSKDDGDGEISR 1289
+SVT+ TG K+NAGT+ANVFI L GT M L + D +F+R + E FTV +D+GDL V + HD + WF++ V V + PC +WL+ EDD + R L L P V YE+ + T DV AGTDA++FI IYG + + + N FER F ++++ +G+ +++I I H+NTG GW V I K E F C++WL+ + D + R
Sbjct: 899 FSVTIKTGVKKNAGTDANVFITLFGT----QDDTGMTLLKSSKTNSD-----KFERDSIEIFTVETLDLGDLWKVRLGHDNTGKAPGWFVDWVEVDAPSLGKCMTFPCGRWLAKNEDDGSIIRDLFHAELQTRLYTP-FVPYEITLYTSDVFAAGTDANIFIIIYGCDAVCTQQKYLCTNKREQKQFFERKSASRFIVELEDVGEIIEKIRIGHNNTGMNPGWHCSHVDIRRLLPDKDGAETLTFPCDRWLATSEDDKKTIR 1150 HSP 7 Score: 120.168 bits (300), Expect = 1.025e-28 Identity = 80/260 (30.77%), Postives = 132/260 (50.77%), Query Frame = 3
Query: 528 IAYSVTVITGDKRNAGTNANVFINLRGTLGRINKQHLMKELDADAMEIDDDETFQFKRATSERFTVS-GVDIGDLISVEIEHDGVERNQSWFLEEVSVKKYETKQTWVLPCKKWLSLYEDDCQVKRILKPLPP-EQARPERVVYEVEVLTGDVRGAGTDAHVFITIYGERGNTGRVQLVNRNVDTFERSRTDLFKIKVKYLGKLQRILIEHDNTGFAAGWFLDRVTITNSDSPKEKWYFVCNKWLSKDDGDGEISRLVQA 1301
I Y VTV TGD R AGT + +++ + G G N + E F R ++ F + V + L V + H V N+ WF E+V + T PC WL + D ++R L + + R ++ + + V T D++ AGT++ +FI IYG++G T + L+N N F+ + F+I++ LG+ +I + HD +GW L+R+T+ N+ + K+K+ F CN+WL ++ D EI R + A
Sbjct: 18 ITYIVTVFTGDVRGAGTKSKIYLVMYGARGNKNSGKIFLEGGV------------FDRGRTDIFHIELAVLLSPLSRVSVGHGNVGVNRGWFCEKVVILCPFTGIQQTFPCSNWLDEKKADGLIERQLYEMVSLRKKRLKKFPWSLWVWTTDLKKAGTNSPIFIQIYGQKGRTDEI-LLNPNNKWFKPGIIEKFRIELPDLGRFYKIRVWHDKRSSGSGWHLERMTLMNTLN-KDKYNFNCNRWLDANEDDNEIVREMTA 263 HSP 8 Score: 116.701 bits (291), Expect = 1.355e-27 Identity = 70/222 (31.53%), Postives = 120/222 (54.05%), Query Frame = 3
Query: 534 YSVTVITGDKRNAGTNANVFINLRGTLGRINKQHLMKELDADAMEIDDDETFQFKRATSERFTVSGVDIGDLISVEIEHDGVERNQSWFLEEVSVKKYETKQTWVLPCKKWLSLYEDDCQVKRILKPLPPEQARPERVV-YEVEVLTGDVRGAGTDAHVFITIYGERGNTGRVQLVNRNVDTFERSRTDLFKIKVKYLGKLQRILIEHDNTGFAAGWFLDRV 1196
Y +++ TGD A T++ V+I L G KQ L+ D++ F+R + FT+ ++IG++ + I HD + SWFL V ++ + + P +WL + D +++ ++ P E +++V YEVE+ TGDV GAGT A V++ IYGE+G T + L +R+ FER+ D F+++ +G++ ++ + H GF WF+D V
Sbjct: 408 YHISLKTGDVSGASTDSRVYIKLYGDKSDTIKQVLLVS--------DNNLKDYFERGRVDEFTLETLNIGNINRLVIGHDSTGMHASWFLGSVQIRVPRQGKQYTFPANRWLDKNQADGRLE--VELYPSEVVEIQKLVHYEVEIWTGDVGGAGTSARVYMQIYGEKGKTEVLFLSSRS-KVFERASKDTFQLEAADVGEVYKLRLGHTGEGFGPSWFVDTV 618 HSP 9 Score: 114.005 bits (284), Expect = 1.116e-26 Identity = 63/145 (43.45%), Postives = 98/145 (67.59%), Query Frame = 3
Query: 861 KWLSLYEDDCQVKRILKPLPPEQARPERVVYEVEVLTGDVRGAGTDAHVFITIYGER-GNTGRVQLVNRN-VDTFERSRTDLFKIKVKYLGKLQRILIEHDNTGFAAGWFLDRVTITNSDSPKEKWYFVCNKWLSKDDGDGEISR 1289
+WL+ ++D ++ +++ +P + PER YEV+V+TG+V AGTDA+V++TIYGE G+TG L + + FE+ +TD F I LG L +I I HDNTG AGWFLDR+ IT+ ++ + +YF C +WL+ ++ DG++SR
Sbjct: 718 RWLARGKEDNEL--VVELVPAGKPGPERNTYEVQVVTGNVPKAGTDANVYLTIYGEEYGDTGERPLKKSDKSNKFEQGQTDTFTIYAIDLGALTKIRIRHDNTGNRAGWFLDRIDITDMNN-EITYYFPCQRWLAVEEDDGQLSR 859 HSP 10 Score: 111.694 bits (278), Expect = 5.432e-26 Identity = 72/249 (28.92%), Postives = 121/249 (48.59%), Query Frame = 3
Query: 528 IAYSVTVITGDKRNAGTNANVFINLRGTLGRINKQHLMKELDADAMEIDDDETFQFKRATSERFTVSGVDIGDLISVEIEHDGVERNQSWFLEEVSVKKYETKQTWVLPCKKWLSLYEDDCQVKRILKPLPPEQAR-PERVVYEVEVLTGDVRGAGTDAHVFITIYGERGNTGRVQLVNRNVDTFERSRTDLFKIKVKYLGKLQRILIEHDNTGFAAGWFLDRVTITNSDSPKEKWYFVCNKWLSKDDG 1271
I Y V+V TG ++A T++ FI L G +K+ + F R + E F V+G+D+G + +E+ HDG W +EE+ + ++L C WL+ D R+ L +V+YE+ V TGDV G GTD+++F+T+YG G+T +QL ++ FER + D F +++ + ++ I D G WFL+R+ + N ++ ++ WLS+ G
Sbjct: 1349 IPYYVSVTTGKHKDAATDSRAFIFLIGEDDERSKRIWLDYPRGKR---------GFSRGSVEEFYVAGLDVGIIKKIELGHDGASPESCWLVEELCLAVPTQGTKYMLNCNCWLAKDRGDGITSRVFDLLDAMVVNIGVKVLYEMTVWTGDVVGGGTDSNIFMTLYGINGSTEEMQL-DKKKARFEREQNDTFIMEILDIAPFTKMRIRIDGLGSRPEWFLERILLKNMNTGDLTMFYY-GDWLSQRKG 1586 HSP 11 Score: 99.7525 bits (247), Expect = 3.537e-22 Identity = 71/301 (23.59%), Postives = 132/301 (43.85%), Query Frame = 3
Query: 528 IAYSVTVITGDKRNAGTNANVFINLRGTLGRINKQHLMKELDADAMEIDDDETFQFKRATSERFTVSGVDIGDLISVEIEHDGVERNQSWFLEEVSVKKYETKQTWVLPCKKWLSLYEDDCQVKRIL-------------------------------------KPLPPEQARPERVVYEVEVLTGDVRGAGTDAHVFITIYGERGN-TGRVQL-VNRNVDTFERSRTDLFKIKVKYLGKLQRILIEHDNTGFAAGWFLDRVTITNSDSPKEKWYFVCNKWLSKDDGDGEISRLVQATKSL 1313
+ YSV + TG+ AGT+A V+I + G LG +++L K ++ T +F+R T++ F + D+G + +++ HD + W++E+V + + ++ C +WLSL ++D +++R+ P+ + Y V V TG + A TD+ FI + GE + R+ L R F R + F + +G +++I + HD + W ++ + + + K+ CN WL+KD GDG SR+ ++
Sbjct: 1182 VLYSVQIFTGNIPGAGTDAKVYITIYGDLGDTGERYLGKS---------ENRTNKFERGTADTFIIEAADLGVIYKIKLRHDNSKWCADWYVEKVEIWNDTNEDEFLFLCGRWLSLKKEDGRLERLFYEKEYTGDRSSNCSSPADFWEIALSSKMADVDISTVTGPMADYVQEGPIIPYYVSVTTGKHKDAATDSRAFIFLIGEDDERSKRIWLDYPRGKRGFSRGSVEEFYVAGLDVGIIKKIELGHDGASPESCWLVEELCLA-VPTQGTKYMLNCNCWLAKDRGDGITSRVFDLLDAM 1472 HSP 12 Score: 83.5741 bits (205), Expect = 7.989e-17 Identity = 51/139 (36.69%), Postives = 75/139 (53.96%), Query Frame = 3
Query: 906 LKPLPPEQARPERVVYEVEVLTGDVRGAGTDAHVFITIYGERG--NTGRVQLVNRNVDTFERSRTDLFKIKVK-YLGKLQRILIEHDNTGFAAGWFLDRVTITNSDSPKEKWYFVCNKWLSKDDGDGEISRLVQATKSL 1313
L L P + P + Y V V TGDVRGAGT + +++ +YG RG N+G++ L F+R RTD+F I++ L L R+ + H N G GWF ++V I + ++ F C+ WL + DG I R + SL
Sbjct: 6 LNTLFPVVSTPA-ITYIVTVFTGDVRGAGTKSKIYLVMYGARGNKNSGKIFLEG---GVFDRGRTDIFHIELAVLLSPLSRVSVGHGNVGVNRGWFCEKVVILCPFTGIQQ-TFPCSNWLDEKKADGLIERQLYEMVSL 139 The following BLAST results are available for this feature:
BLAST of TCONS_00013294 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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