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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013297 ID=TCONS_00013297|Name=TCONS_00013297|organism=Clytia hemisphaerica|type=transcript|length=2472bpRun BLAST on NCBI protein sequence of TCONS_00013297-protein >TCONS_00013297-protein ID=TCONS_00013297-protein|Name=TCONS_00013297-protein|organism=Clytia hemisphaerica|type=polypeptide|length=619bp MIIPLIIGVTFVGAVLYILKKLNLQHTLLKSVDKTSKRHGGELVAQVLKSRun BLAST on NCBI transcript from alignment at sc0000164:213225..239473- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013297 ID=TCONS_00013297|Name=TCONS_00013297|organism=Clytia hemisphaerica|type=transcript|length=26249bp|location=Sequence derived from alignment at sc0000164:213225..239473- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000164:213225..239473- >TCONS_00013297 ID=TCONS_00013297|Name=TCONS_00013297|organism=Clytia hemisphaerica|type=CDS|length=29760bp|location=Sequence derived from alignment at sc0000164:213225..239473- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013297 vs. Swiss-Prot (Human)
Match: ILVBL (Acetolactate synthase-like protein OS=Homo sapiens GN=ILVBL PE=1 SV=2) HSP 1 Score: 678.322 bits (1749), Expect = 0.000e+0 Identity = 357/610 (58.52%), Postives = 466/610 (76.39%), Query Frame = 1
Query: 418 TFVGAVLYILKKLNLQHTLLKSVDKTSKRHGGELVAQVLKSHGIEYIFTLVGGHISPILVSCETLKIKVVDTRHEVNAVFAADAVARLSGKVGVAAVTAGPGLTNTVTAIKNAQMAESPXXXXXXXXXXXXKGRGALQDIDQMCLFKPLCKFTATITRVAEIVPTLQKALQIAQSGTPGPVFVEFPIDVLYPYELVRKEAGIKTNPKGLIPKIVNWYIANNVDSIFAGAWDPISTKPLPPQIPMPSTMEVDQXXXXXXXXXXXXXXIGSQAVLPPVPADKLRSSLEALGIPCFLGGMSRGLLGRNSNIHIRQRRRDALSEADVVLLIGTVCDFRLSYGRVFNRKSKIICVNRNRSQLMKNSDVFWKPTVAIQADPASFVVELCNKGMKPAAEVGDWAQLLKEREIEKEKTNKLKAEAKPEKFINPVKLLHELDDALDDNSIIVADGGDFVGTAAYILRPRGPFCWLDPXXXXXXXXXXXXXXXXXXXRPESEVWIIWGDGSSAYSIAEYDTFKRFKVPVIGLIGNDACWSQIAREQVPLFDSSVACDLVYTDYEKVVEGYGGKGLRLESDDVKTIYETFQKAKEIAKDGEPVVINALIGKSDFRAGSISV 2247
T V A+L +L L + LL VDK S RHGGE VA VL++HG+ +IFTLVGGHISP+LV+CE L I+VVDTRHEV AVFAADA+ARLSG VGVAAVTAGPGLTNTVTA+KNAQMA+SPILL+GGAA+TLL+ RGALQ +DQ+ LF+PLCKF ++ RV +IVPTL+ A+ AQSGTPGPVFVE P+DVLYPY +V+KE PKGL+ ++V+WY+ N + ++FAGAW+P PLP IP S +V + ++L AK+P+ ++GSQA+L P ADKLR+++E LG+PCFLGGM+RGLLGRN +HIR+ R AL +ADV++L GTVCDFRLSYGRV + SKII VNRNR +++ NSD+FWKP A+Q D SFV++L +G++ DW + L+E + +KE+T + KA + +NPV++L +++ L DNSI+V DGGDFVGTAA++++PRGP WLDPGAFGTLGVG GFALGAKL RP++EVW ++GDG+ YS+ E+DTF R K+PV+ L+GNDA W+QI+REQVP S+VAC L YTDY K G G +GL L ++ + + A++ +DG PVV+N LIG++DFR GSI+V
Sbjct: 24 TLVAALLGAAHRLGLFYQLLHKVDKASVRHGGENVAAVLRAHGVRFIFTLVGGHISPLLVACEKLGIRVVDTRHEVTAVFAADAMARLSGTVGVAAVTAGPGLTNTVTAVKNAQMAQSPILLLGGAASTLLQNRGALQAVDQLSLFRPLCKFCVSVRRVRDIVPTLRAAMAAAQSGTPGPVFVELPVDVLYPYFMVQKEMVPAKPPKGLVGRVVSWYLENYLANLFAGAWEPQPEGPLPLDIPQASPQQVQRCVEILSRAKRPLMVLGSQALLTPTSADKLRAAVETLGVPCFLGGMARGLLGRNHPLHIRENRSAALKKADVIVLAGTVCDFRLSYGRVLSHSSKIIIVNRNREEMLLNSDIFWKPQEAVQGDVGSFVLKLV-EGLQGQTWAPDWVEELREADRQKEQTFREKAAMPVAQHLNPVQVLQLVEETLPDNSILVVDGGDFVGTAAHLVQPRGPLRWLDPGAFGTLGVGAGFALGAKLCRPDAEVWCLFGDGAFGYSLIEFDTFVRHKIPVMALVGNDAGWTQISREQVPSLGSNVACGLAYTDYHKAAMGLGARGLLLSRENEDQVVKVLHDAQQQCRDGHPVVVNILIGRTDFRDGSIAV 632 The following BLAST results are available for this feature:
BLAST of TCONS_00013297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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