TCONS_00013316 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013316
Unique NameTCONS_00013316
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013316 ID=TCONS_00013316|Name=TCONS_00013316|organism=Clytia hemisphaerica|type=transcript|length=1457bp
AAATATTACAGCGATTTGTTAAACAAAAACGGCCCCGCTAAAGGTGGATT
GAATTCGTTCCTTGAGGATGCAGTACGGTTTGCGCAAAAGACTGGACCGA
GTCAAAATGAGAATAACGAAGCACCACTTCCAATTAAGTCTTGGAATTTA
TTTAAATCCAACATGGAAAAAGCGTATGTGAAAATGAAAGACAGCCAAGA
ACAATCCGATAGTTCAGAacagaaaaataagaacaacaaCGAAGGACAGA
ATAATTTTACAACAAATAATTTTGCTAAGGAATTTATTAAGCACGATAGT
ACGTCAGATGATGATTTCAATCAAGCGAGTGGCCCCGNTCTGATGACGCT
CAGGAATCTAGTAGGCACGATAGTACTTCAGATGATGATTTCAATCAAGC
GAGTGGCCCCGCACGAACTCGAATTTCAAACCAAGCTAACAAGCCAACAT
CAGAGCATTCTCATTATTTAAACCAATTGAAAACGACAGCGATCAGAATA
AAGGATTTGCTTTTGAAGAGTAACGCTGCactccaaaatcgaaaattggA
TAATAAACTATACAATTTCCTCCAATCAAAAGGCTCGTCACCAGACTCCT
TTGGTGAAGAAGCGGTAAATCGTAAAAAGCATCATGGGAGGAGACACAGA
AAACATCGTAAAGAAAGAAAACGTACAGAAAATGAGGTGCAAGAGAGTGG
ACATTCACAAGAGAACGATGGAGAGTTGTGGGAGGGCGGAGGGCGGCAAG
AGAAAGAAGGTAACAGGTGGTTAAAGGAGAAGGGTGATAGAAGCGCAGGA
CTAAGACACTCTCAATCAATGACCGTGCAAGATGGAGATCTCGGTGAAGG
AGAGCAGAGAGAGCACAACGATGGAGAACATACACAAGGACAATACAATG
GACCACAGGGTGAGGGCAGTAAAGTCAATAGCAACAGCGAAGGAGGGTTG
GAAAATAGAGGATCACAGGAAGAGAGCAGCAGACCTTTCAGTTACAAAGA
TGGACAGGTTAATAAAGGACCACACAAGGAGAATAACAATAGAGAGTCAC
AGGAGGAGACCAGCAGCAGACTTGAAGAAAGCAATGGTGAAGGAGAGTTA
ACGTTTTTAAAGACAAATGGCGAACCACAGCATAAGGGATTTGAGAATAA
AAATGAGAAGGTAGCAAGTATTCAAGAACTAAACCGAAACCCTGATTCGA
GGGACAATAAATTTAACGATTTCCCACAAAAAGAGCTTTCTAACAATATC
GAGATTTTTCGTCAACACGACTCAAGTAAGAAATTcttcgaaaaaaaaga
aaatcggATGGAAATGGATCAACGAAAACAATTTTCTAACAACAAGGAAA
TTTTATATCGAGACAGCCCGATAAGGAAGTTCTTTGAAAGTAAAGACAAT
CAGGGAGAATTGAATCAATATTTTATGAATAAGAACGAGGATAAAAATCA
ATACCCG
Run BLAST on NCBI

protein sequence of TCONS_00013316-protein

>TCONS_00013316-protein ID=TCONS_00013316-protein|Name=TCONS_00013316-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
MTVQDGDLGEGEQREHNDGEHTQGQYNGPQGEGSKVNSNSEGGLENRGSQ
EESSRPFSYKDGQVNKGPHKENNNRESQEETSSRLEESNGEGELTFLKTN
GEPQHKGFENKNEKVASIQELNRNPDSRDNKFNDFPQKELSNNIEIFRQH
DSSKKFFEKKENRMEMDQRKQFSNNKEILYRDSPIRKFFESKDNQGELNQ
YFMNKNEDKNQYP
Run BLAST on NCBI

transcript from alignment at sc0000164:445469..446986-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013316 ID=TCONS_00013316|Name=TCONS_00013316|organism=Clytia hemisphaerica|type=transcript|length=1518bp|location=Sequence derived from alignment at sc0000164:445469..446986- (Clytia hemisphaerica)
AAATATTACAGCGATTTGTTAAACAAAAACGGCCCCGCTAAAGGTGGATT
GAATTCGTTCCTTGAGGATGCAGTACGGTTTGCGCAAAAGACTGGACCGA
GTCAAAATGAGAATAACGAAGCACCACTTCCAATTAAGTCTTGGAATTTA
TTTAAATCCAACATGGAAAAAGCGTATGTGAAAATGAAAGACAGCCAAGA
ACAATCCGATAGTTCAGAACAGAAAAATAAGAACAACAACGAAGGACAGA
ATAATTTTACAACAAATAATTTTGCTAAGGAATTTATTAAGCACGATAGT
ACGTCAGATGATGATTTCAATCAAGCGAGTGGCCCCGNTCTGATGACGCT
CAGGAATCTAGTAGGCACGATAGTACTTCAGATGATGATTTCAATCAAGC
GAGTGGCCCCGCACGAACTCGAATTTCAAACCAAGCTAACAAGCCAACAT
CAGAGCATTCTCATTATTTAAACCAATTGAAAACGACAGCGATCAGAATA
AAGGATTTGCTTTTGAAGAGTAACGCTGCACTCCAAAATCGAAAATTGGA
TAATAAACTATACAATTTCCTCCAATCAAAAGGCTCGTCACCAGACTCCT
TTGGTGAAGAAGCGGTAAATCGTAAAAAGCATCATGGGAGGAGACACAGA
AAACATCGTAAAGAAAGAAAACGTACAGAAAATGAGGTGCAAGAGAGTGG
ACATTCACAAGAGAACGATGGAGAGTTGTGGGAGGGCGGAGGGCGGCAAG
AGAAAGAAGGTAACAGGTGGTTAAAGGAGAAGGGTGATAGAAGCGCAGGA
CTAAGACACTCTCAATCAATGACCGTGCAAGATGGAGATCTCGGTGAAGG
AGAGCAGAGAGAGCACAACGATGGAGAACATACACAAGGACAATACAATG
GANCGCGAAGGAGAGCAGAGGCAGCACAACGATGGAGAACATACACAAGG
ACAATACAATGGACCACAGGGTGAGGGCAGTAAAGTCAATAGCAACAGCG
AAGGAGGGTTGGAAAATAGAGGATCACAGGAAGAGAGCAGCAGACCTTTC
AGTTACAAAGATGGACAGGTTAATAAAGGACCACACAAGGAGAATAACAA
TAGAGAGTCACAGGAGGAGACCAGCAGCAGACTTGAAGAAAGCAATGGTG
AAGGAGAGTTAACGTTTTTAAAGACAAATGGCGAACCACAGCATAAGGGA
TTTGAGAATAAAAATGAGAAGGTAGCAAGTATTCAAGAACTAAACCGAAA
CCCTGATTCGAGGGACAATAAATTTAACGATTTCCCACAAAAAGAGCTTT
CTAACAATATCGAGATTTTTCGTCAACACGACTCAAGTAAGAAATTCTTC
GAAAAAAAAGAAAATCGGATGGAAATGGATCAACGAAAACAATTTTCTAA
CAACAAGGAAATTTTATATCGAGACAGCCCGATAAGGAAGTTCTTTGAAA
GTAAAGACAATCAGGGAGAATTGAATCAATATTTTATGAATAAGAACGAG
GATAAAAATCAATACCCG

Coding sequence (CDS) from alignment at sc0000164:445469..446986-

>TCONS_00013316 ID=TCONS_00013316|Name=TCONS_00013316|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at sc0000164:445469..446986- (Clytia hemisphaerica)
ATACACAAGGACAATACAATGGACCACAGGGTGAGGGCAGTAAAGTCAAT
AGCAACAGCGAAGGAGGGTTGGAAAATAGAGGATCACAGGAAGAGAGCAG
CAGACCTTTCAGTTACAAAGATGGACAGGTTAATAAAGGACCACACAAGG
AGAATAACAATAGAGAGTCACAGGAGGAGACCAGCAGCAGACTTGAAGAA
AGCAATGGTGAAGGAGAGTTAACGTTTTTAAAGACAAATGGCGAACCACA
GCATAAGGGATTTGAGAATAAAAATGAGAAGGTAGCAAGTATTCAAGAAC
TAAACCGAAACCCTGATTCGAGGGACAATAAATTTAACGATTTCCCACAA
AAAGAGCTTTCTAACAATATCGAGATTTTTCGTCAACACGACTCAAGTAA
GAAATTCTTCGAAAAAAAAGAAAATCGGATGGAAATGGATCAACGAAAAC
AATTTTCTAACAACAAGGAAATTTTATATCGAGACAGCCCGATAAGGAAG
TTCTTTGAAAGTAAAGACAATCAGGGAGAATTGAATCAATATTTTATGAA
TAAGAACGAGGATAAAAATCAATACCCGATGACCGTGCAAGATGGAGATC
TCGGTGAAGGAGAGCAGAGAGAGCACAACGATGGAGAACATACACAAGGA
CAATACAATGGACCACAGGGTGAGGGCAGTAAAGTCAATAGCAACAGCGA
AGGAGGGTTGGAAAATAGAGGATCACAGGAAGAGAGCAGCAGACCTTTCA
GTTACAAAGATGGACAGGTTAATAAAGGACCACACAAGGAGAATAACAAT
AGAGAGTCACAGGAGGAGACCAGCAGCAGACTTGAAGAAAGCAATGGTGA
AGGAGAGTTAACGTTTTTAAAGACAAATGGCGAACCACAGCATAAGGGAT
TTGAGAATAAAAATGAGAAGGTAGCAAGTATTCAAGAACTAAACCGAAAC
CCTGATTCGAGGGACAATAAATTTAACGATTTCCCACAAAAAGAGCTTTC
TAACAATATCGAGATTTTTCGTCAACACGACTCAAGTAAGAAATTCTTCG
AAAAAAAAGAAAATCGGATGGAAATGGATCAACGAAAACAATTTTCTAAC
AACAAGGAAATTTTATATCGAGACAGCCCGATAAGGAAGTTCTTTGAAAG
TAAAGACAATCAGGGAGAATTGAATCAATATTTTATGAATAAGAACGAGG
ATAAAAATCAATACCCGATGACCGTGCAAGATGGAGATCTCGGTGAAGGA
GAGCAGAGAGAGCACAACGATGGAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007442XLOC_007442Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013316-proteinTCONS_00013316-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013316-exon-sc0000164-1575043694:446108..446986TCONS_00013316-exon-sc0000164-1575043694:446108..446986Clytia hemisphaericaexon
TCONS_00013316-exon-sc0000164-1575043694:445469..446046TCONS_00013316-exon-sc0000164-1575043694:445469..446046Clytia hemisphaericaexon
TCONS_00013316-exon-sc0000164-1510915933:446108..446986TCONS_00013316-exon-sc0000164-1510915933:446108..446986Clytia hemisphaericaexon
TCONS_00013316-exon-sc0000164-1510915933:445469..446046TCONS_00013316-exon-sc0000164-1510915933:445469..446046Clytia hemisphaericaexon
TCONS_00013316-exon-sc0000164-1491911889:446108..446986TCONS_00013316-exon-sc0000164-1491911889:446108..446986Clytia hemisphaericaexon
TCONS_00013316-exon-sc0000164-1491911889:445469..446046TCONS_00013316-exon-sc0000164-1491911889:445469..446046Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000164supercontigsc0000164:445469..446986 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.653837	0.720758	0.257498	0.251922	0.191682	0.242351	0.694417	0.889617	0.503065	0.504436	0.201607	0.56798	0.888599	0.942453	0.758682	2.39058	0.7896	1.11554	0.181316	0.0948668	0.824565	0.764168	0.684487	0.681564	0.610431	1.44371	0.42878	0.374404	0.12621	0.096441
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top