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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013342 ID=TCONS_00013342|Name=TCONS_00013342|organism=Clytia hemisphaerica|type=transcript|length=980bp
aaattttaaactttcaaattctcaGCCCTGACCACGCTATTCGTTTTGCC
ATCAATATATAAGTAAAGAAATCATAGCTTAGATCTCAAGGCTAAAAAAG
AGAGGATATGAATAATTTGATGACTGCTGAGATACCAAATAAGGCAAATA
GAATGATAAGAAAACACTGGGCCAGAATTTCTGTAGAAATTTACGCAGTG
GATTGTGGTTTGAAGCCAGCATggttaaatgattttttatctGTTGATGT
CAGAGAATTTGTGGAGCTACTGGATTGGATGCATTGCAACGGGTATACCA
AAAATAAGCTTCAGGCTATTCAAATATCTTCAGACGTTCTTGTGGTAAAG
AGGAATGAGTTTTCAAAACGAATTGGAAATGCTCtagaatgtttaaaaaa
ttacaataagATGTGTTCAACTCCAGTATTTATTTTTGCTGGAGCAACAC
AACCTCTTGAAATGAATCAAACAAATGAGACAATGATCAACAGATGTGTA
AACAAGCTAAATGGGATTATTGCAGAATTAAAATCATACCTTgaaaatct
tacaaaagaaCAATATTTTAATATTGACCCTAAAGAATTTACACCAACAG
TTTTTGGAATAGCTTTGGGCTATCCAGTTATCTATATTCAACCGACAACA
GATTCTCCACAAACATTAGATCTCAATGTTACaactttcactttcaattt
cgcAGTTCAAGAACAAGACAATATGAGCAACTTTGTATGCTATTCATTCA
GCTATCCATCATCCTTGGAATTATCAGATACTCAAATGAAGTTTATAGAA
CAGTGGAAATGTGATGTGATTAATACGTGTGTTGTTCATGGAATTGACTA
CAATCTGGAATTATCAACGAAACAAAATATTCATGTTATTCTATGACAGA
TAACTTGATGACTTTAAATTTTACTGGATTTTATATTAGACTTGATTATT
CATAGAATATTGTAGTCATAATCCAAACAA Run BLAST on NCBI protein sequence of TCONS_00013342-protein >TCONS_00013342-protein ID=TCONS_00013342-protein|Name=TCONS_00013342-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
MNNLMTAEIPNKANRMIRKHWARISVEIYAVDCGLKPAWLNDFLSVDVRE
FVELLDWMHCNGYTKNKLQAIQISSDVLVVKRNEFSKRIGNALECLKNYN
KMCSTPVFIFAGATQPLEMNQTNETMINRCVNKLNGIIAELKSYLENLTK
EQYFNIDPKEFTPTVFGIALGYPVIYIQPTTDSPQTLDLNVTTFTFNFAV
QEQDNMSNFVCYSFSYPSSLELSDTQMKFIEQWKCDVINTCVVHGIDYNL
ELSTKQNIHVIL Run BLAST on NCBI transcript from alignment at sc0000164:354881..355860 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013342 ID=TCONS_00013342|Name=TCONS_00013342|organism=Clytia hemisphaerica|type=transcript|length=980bp|location=Sequence derived from alignment at sc0000164:354881..355860 (Clytia hemisphaerica)
TTGTTTGGATTATGACTACAATATTCTATGAATAATCAAGTCTAATATAA
AATCCAGTAAAATTTAAAGTCATCAAGTTATCTGTCATAGAATAACATGA
ATATTTTGTTTCGTTGATAATTCCAGATTGTAGTCAATTCCATGAACAAC
ACACGTATTAATCACATCACATTTCCACTGTTCTATAAACTTCATTTGAG
TATCTGATAATTCCAAGGATGATGGATAGCTGAATGAATAGCATACAAAG
TTGCTCATATTGTCTTGTTCTTGAACTgcgaaattgaaagtgaaagttGT
AACATTGAGATCTAATGTTTGTGGAGAATCTGTTGTCGGTTGAATATAGA
TAACTGGATAGCCCAAAGCTATTCCAAAAACTGTTGGTGTAAATTCTTTA
GGGTCAATATTAAAATATTGttcttttgtaagattttcAAGGTATGATTT
TAATTCTGCAATAATCCCATTTAGCTTGTTTACACATCTGTTGATCATTG
TCTCATTTGTTTGATTCATTTCAAGAGGTTGTGTTGCTCCAGCAAAAATA
AATACTGGAGTTGAACACATcttattgtaattttttaaacattctaGAGC
ATTTCCAATTCGTTTTGAAAACTCATTCCTCTTTACCACAAGAACGTCTG
AAGATATTTGAATAGCCTGAAGCTTATTTTTGGTATACCCGTTGCAATGC
ATCCAATCCAGTAGCTCCACAAATTCTCTGACATCAACagataaaaaatc
atttaaccATGCTGGCTTCAAACCACAATCCACTGCGTAAATTTCTACAG
AAATTCTGGCCCAGTGTTTTCTTATCATTCTATTTGCCTTATTTGGTATC
TCAGCAGTCATCAAATTATTCATATCCTCTCTTTTTTAGCCTTGAGATCT
AAGCTATGATTTCTTTACTTATATATTGATGGCAAAACGAATAGCGTGGT
CAGGGCtgagaatttgaaagtttaaaattt Coding sequence (CDS) from alignment at sc0000164:354881..355860 >TCONS_00013342 ID=TCONS_00013342|Name=TCONS_00013342|organism=Clytia hemisphaerica|type=CDS|length=789bp|location=Sequence derived from alignment at sc0000164:354881..355860 (Clytia hemisphaerica)
TCATAGAATAACATGAATATTTTGTTTCGTTGATAATTCCAGATTGTAGT
CAATTCCATGAACAACACACGTATTAATCACATCACATTTCCACTGTTCT
ATAAACTTCATTTGAGTATCTGATAATTCCAAGGATGATGGATAGCTGAA
TGAATAGCATACAAAGTTGCTCATATTGTCTTGTTCTTGAACTgcgaaat
tgaaagtgaaagttGTAACATTGAGATCTAATGTTTGTGGAGAATCTGTT
GTCGGTTGAATATAGATAACTGGATAGCCCAAAGCTATTCCAAAAACTGT
TGGTGTAAATTCTTTAGGGTCAATATTAAAATATTGttcttttgtaagat
tttcAAGGTATGATTTTAATTCTGCAATAATCCCATTTAGCTTGTTTACA
CATCTGTTGATCATTGTCTCATTTGTTTGATTCATTTCAAGAGGTTGTGT
TGCTCCAGCAAAAATAAATACTGGAGTTGAACACATcttattgtaatttt
ttaaacattctaGAGCATTTCCAATTCGTTTTGAAAACTCATTCCTCTTT
ACCACAAGAACGTCTGAAGATATTTGAATAGCCTGAAGCTTATTTTTGGT
ATACCCGTTGCAATGCATCCAATCCAGTAGCTCCACAAATTCTCTGACAT
CAACagataaaaaatcatttaaccATGCTGGCTTCAAACCACAATCCACT
GCGTAAATTTCTACAGAAATTCTGGCCCAGTGTTTTCTTATCATTCTATT
TGCCTTATTTGGTATCTCAGCAGTCATCAAATTATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013342-exon-sc0000164-1491911889:354881..355860 | TCONS_00013342-exon-sc0000164-1491911889:354881..355860 | Clytia hemisphaerica | exon |
| TCONS_00013342-exon-sc0000164-1510915933:354881..355860 | TCONS_00013342-exon-sc0000164-1510915933:354881..355860 | Clytia hemisphaerica | exon |
| TCONS_00013342-exon-sc0000164-1575043694:354881..355860 | TCONS_00013342-exon-sc0000164-1575043694:354881..355860 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000164 | supercontig | sc0000164:354881..355860 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027850 | DUF4504 |
Blast
The following BLAST results are available for this feature:
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