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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013347 ID=TCONS_00013347|Name=TCONS_00013347|organism=Clytia hemisphaerica|type=transcript|length=1244bp
AAGATATGCAGATTGGACAAAAGAATGGGTGTTCACTATTGGCAAAAAGA
GTGAGCTGAcgtttagaaattttgaaacatttagcATGTATCCAGGTGTT
ACATAGGTCACAAAAAATACAGTCATTCAGACAAATAAGTTTGCACTTGT
GGCAAATAACCGATTCTATAGTGGTACCCATCATATGAATTTACTAATGT
GTGCTATTGCTTTTACAGGTTTGATATcagagttttcattttttcttacc
ATGGTTACTCCATGGACTGTCCAAATAAACTTGTAACCCTTCTCTTTAAG
TTGATTTCTTGTGGTTTTAAATATGTTCCCGTTGATTCTTGTTAAACTCT
CGTTGatataaattttgttgtttttatcgaAACCAATGTCTCTGGttgtt
tttccttttaattTGTTACGGTTCCTAAAAAAGAGATTCCGCGTTCGTCT
AGATAAAAATTTCACAATTATTGGTGCATCTGGTTCTGTTGACGTTCTAT
GACTGATTTCTATGTGGTTGGTGTTCAGATTTAGTCCAATTTGCTCAGCT
ATGTCCAGTACAATTTTGTCTGTATCCTCATTATCTTTCCTTGGTACTCC
ACAGATGTCCACCATATTTCTACGACCATATTGTTCAAGATCATTGGTGC
TGGCAGCTGTTTTGTTGACAATTTTCTTTAGGTCCTCAAGAGACTTTTTT
AGGTTCAAAATATCAATGGAATGTTCATTGTCAGATTTTACCAGTTTGGT
TAGGCCCTGTTCAACTTTAGCTACTTTCTTTTGAGACTCATCAAACTTCT
CACTGATGTGGGCCTGGGAAGCAACAATCCCGTTCACGTTATCGTCTAAG
GTTTTAACATTATTGTTCATGGTTTTCATATCGTCATTCAGAATTTCGAT
TCTACCATAAATATTTGCAATTTCTTCCTTAGTTCTGGCTTCCATAGCAT
CCagctttttcaaaatgtttttgttttgcgAGTATATGTTTACCATCAAG
AGTTTAAAATCAATTGGTATTTTACCTTCTACATTGAAACTTATTTCTTC
ATCTCCAATTTCTTTCATAATAGATTCCAGGTCTTCATTGAGTGTATTGG
CGGATGTAATGTTGGTTGTCATCTCTTGTTTCTCAGTGCGTTGTTGTTgt
ttcttcttgtttttgttgttgttgttgttgttgttgttgttgttgttgtt
gtttgacatcattcttccttttttttgtttttagtattttcctc Run BLAST on NCBI protein sequence of TCONS_00013347-protein >TCONS_00013347-protein ID=TCONS_00013347-protein|Name=TCONS_00013347-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
MMSNNNNNNNNNNNNNKNKKKQQQRTEKQEMTTNITSANTLNEDLESIMK
EIGDEEISFNVEGKIPIDFKLLMVNIYSQNKNILKKLDAMEARTKEEIAN
IYGRIEILNDDMKTMNNNVKTLDDNVNGIVASQAHISEKFDESQKKVAKV
EQGLTKLVKSDNEHSIDILNLKKSLEDLKKIVNKTAASTNDLEQYGRRNM
VDICGVPRKDNEDTDKIVLDIAEQIGLNLNTNHIEISHRTSTEPDAPIIV
KFLSRRTRNLFFRNRNKLKGKTTRDIGFDKNNKIYINESLTRINGNIFKT
TRNQLKEKGYKFIWTVHGVTMVRKNENSDIKPVKAIAHISKFI Run BLAST on NCBI transcript from alignment at sc0000164:420782..422025 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013347 ID=TCONS_00013347|Name=TCONS_00013347|organism=Clytia hemisphaerica|type=transcript|length=1244bp|location=Sequence derived from alignment at sc0000164:420782..422025 (Clytia hemisphaerica)
gaggaaaatactaaaaacaaaaaaaaggaagaatgatgtcaaacaacaac
aacaacaacaacaacaacaacaacaacaacaaaaacaagaagaaacAACA
ACAACGCACTGAGAAACAAGAGATGACAACCAACATTACATCCGCCAATA
CACTCAATGAAGACCTGGAATCTATTATGAAAGAAATTGGAGATGAAGAA
ATAAGTTTCAATGTAGAAGGTAAAATACCAATTGATTTTAAACTCTTGAT
GGTAAACATATACTcgcaaaacaaaaacattttgaaaaagctGGATGCTA
TGGAAGCCAGAACTAAGGAAGAAATTGCAAATATTTATGGTAGAATCGAA
ATTCTGAATGACGATATGAAAACCATGAACAATAATGTTAAAACCTTAGA
CGATAACGTGAACGGGATTGTTGCTTCCCAGGCCCACATCAGTGAGAAGT
TTGATGAGTCTCAAAAGAAAGTAGCTAAAGTTGAACAGGGCCTAACCAAA
CTGGTAAAATCTGACAATGAACATTCCATTGATATTTTGAACCTAAAAAA
GTCTCTTGAGGACCTAAAGAAAATTGTCAACAAAACAGCTGCCAGCACCA
ATGATCTTGAACAATATGGTCGTAGAAATATGGTGGACATCTGTGGAGTA
CCAAGGAAAGATAATGAGGATACAGACAAAATTGTACTGGACATAGCTGA
GCAAATTGGACTAAATCTGAACACCAACCACATAGAAATCAGTCATAGAA
CGTCAACAGAACCAGATGCACCAATAATTGTGAAATTTTTATCTAGACGA
ACGCGGAATCTCTTTTTTAGGAACCGTAACAaattaaaaggaaaaacaaC
CAGAGACATTGGTTtcgataaaaacaacaaaatttatatCAACGAGAGTT
TAACAAGAATCAACGGGAACATATTTAAAACCACAAGAAATCAACTTAAA
GAGAAGGGTTACAAGTTTATTTGGACAGTCCATGGAGTAACCATggtaag
aaaaaatgaaaactctgATATCAAACCTGTAAAAGCAATAGCACACATTA
GTAAATTCATATGATGGGTACCACTATAGAATCGGTTATTTGCCACAAGT
GCAAACTTATTTGTCTGAATGACTGTATTTTTTGTGACCTATGTAACACC
TGGATACATgctaaatgtttcaaaatttctaaacgTCAGCTCACTCTTTT
TGCCAATAGTGAACACCCATTCTTTTGTCCAATCTGCATATCTT Coding sequence (CDS) from alignment at sc0000164:420782..422025 >TCONS_00013347 ID=TCONS_00013347|Name=TCONS_00013347|organism=Clytia hemisphaerica|type=CDS|length=1032bp|location=Sequence derived from alignment at sc0000164:420782..422025 (Clytia hemisphaerica)
atgatgtcaaacaacaacaacaacaacaacaacaacaacaacaacaacaa
aaacaagaagaaacAACAACAACGCACTGAGAAACAAGAGATGACAACCA
ACATTACATCCGCCAATACACTCAATGAAGACCTGGAATCTATTATGAAA
GAAATTGGAGATGAAGAAATAAGTTTCAATGTAGAAGGTAAAATACCAAT
TGATTTTAAACTCTTGATGGTAAACATATACTcgcaaaacaaaaacattt
tgaaaaagctGGATGCTATGGAAGCCAGAACTAAGGAAGAAATTGCAAAT
ATTTATGGTAGAATCGAAATTCTGAATGACGATATGAAAACCATGAACAA
TAATGTTAAAACCTTAGACGATAACGTGAACGGGATTGTTGCTTCCCAGG
CCCACATCAGTGAGAAGTTTGATGAGTCTCAAAAGAAAGTAGCTAAAGTT
GAACAGGGCCTAACCAAACTGGTAAAATCTGACAATGAACATTCCATTGA
TATTTTGAACCTAAAAAAGTCTCTTGAGGACCTAAAGAAAATTGTCAACA
AAACAGCTGCCAGCACCAATGATCTTGAACAATATGGTCGTAGAAATATG
GTGGACATCTGTGGAGTACCAAGGAAAGATAATGAGGATACAGACAAAAT
TGTACTGGACATAGCTGAGCAAATTGGACTAAATCTGAACACCAACCACA
TAGAAATCAGTCATAGAACGTCAACAGAACCAGATGCACCAATAATTGTG
AAATTTTTATCTAGACGAACGCGGAATCTCTTTTTTAGGAACCGTAACAa
attaaaaggaaaaacaaCCAGAGACATTGGTTtcgataaaaacaacaaaa
tttatatCAACGAGAGTTTAACAAGAATCAACGGGAACATATTTAAAACC
ACAAGAAATCAACTTAAAGAGAAGGGTTACAAGTTTATTTGGACAGTCCA
TGGAGTAACCATggtaagaaaaaatgaaaactctgATATCAAACCTGTAA
AAGCAATAGCACACATTAGTAAATTCATATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013347-exon-sc0000164-1491911889:420782..422025 | TCONS_00013347-exon-sc0000164-1491911889:420782..422025 | Clytia hemisphaerica | exon |
| TCONS_00013347-exon-sc0000164-1510915933:420782..422025 | TCONS_00013347-exon-sc0000164-1510915933:420782..422025 | Clytia hemisphaerica | exon |
| TCONS_00013347-exon-sc0000164-1575043694:420782..422025 | TCONS_00013347-exon-sc0000164-1575043694:420782..422025 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000164 | supercontig | sc0000164:420782..422025 . |
Blast
The following BLAST results are available for this feature:
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