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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013353 ID=TCONS_00013353|Name=TCONS_00013353|organism=Clytia hemisphaerica|type=transcript|length=2546bp
AGGTCTCAGCTTTTATGCAggaatcaaaattttttgatggtattttgaaa
gatttgtcTGACATTCTAACGATTTTAAATGGAAATGCATCACGTTTATA
AAATAGATTCGTCTTAAATTAATTGTTTTCAATTGTAATATTAAGATCTA
AAAAGGAAGCACTGTTATCTCCGTGTTCTTTCTTTATTAATTCAAGTTAC
GAGATTTCAGCTTTTCAATGAAATAGACTTTATTAAGTTcgttacaaaaa
aatttttatcattaaattatatttttcttctACTTTCCtgtaaatatttt
acttttattaaATCACCATTCTCGGATTTTGAAAGTGTTCCTTTCTCCAA
ATCAAGAAAAGCATCAATACCAAAGATATAGCCATGAATAGTGGACAAAC
ATATAGGATATGTTCAAAGGCGAAGGCTGCAGTAAACAAACCAAGAGTTG
CTCCAAATCTGGAGCACATCAAACGAACGCTTTCAGAAAATGATTGAATC
TTAGATGGAACCATTTTGGCCAAAACACTCATCATGAATATCTCATCAAC
GATGGCAATAGGAGACATCATAAAAGGATAAGTAACCCATAATGCCACAT
TGATCCATTCCATGCTGTTAACCAAACggaaatataaaaaacatcCAAAC
GGGTAGCATGTGGTTACAAAACTCAAAATCCCAAGATTGACCAACTGATT
CTTCGATGGTGGTTTGAATACCAAGAACAAACACATTAAACTGATGATGG
TACCATTGAACAGAAAAATGAGATTGATTTCCAAGGCTGTCCAATGCAAT
AGTTTTATAACTGCCATGGGTATCCATAGATCTTGCATTAGCATTGTGAT
GAAGGCGAAAAACGAGAgaacaaaaataagaacaatatcTATTGAAGAGA
ACAACTTCATAATAGTCTCTATTATTCCTAATTGGACTTCTGTTCTATTC
TCGGAAGAATCTTTACCCAACAGAGGTTCGTTATCAAAATCAGAGAATAT
TTCAGATGGATCTTCTTCATTTGCACCACATAAACTATCTACTGATTGTT
TGTTAGCATCCATCTTTTGTATTTCCTCTTTTAAGTCAAATTCTTTTNTT
GAATCTTAGATGGAACCATTTTGGCCAAAACACTCATCATGAATATCTCA
TCAACGATTGCAATAGGAGACATCATAAAAGGATAAGTAACCCATAATGC
CACATTTATCCATTCCATGCTGTTCACCAAACGGAAGTACAAAAAACATC
CAAACGGGTAGCATGTAGTTACAAAACTCAAAATCCCAAGATTGACCAAC
TGATTCTTCGATGGCGGTTTGAATACCAAGAACAAACACATTAAACTGAT
AATGGTACCATTGAACAGGAAAATGAGATTGATTTCCAAGGCTGTCCAAT
GCAATAGTTTTATAACTGCCATAGGTATCCATAGATCTTGCATTAGCATT
GTGATGAAGGCGAAAAACGAGAgaacaaaaataagaacaatgtcTATTGA
AGAGAACAACTTCATAAGAGTCTCTATTATTCCTAATTGGTTCACTTCTG
TTCTATTCTCGGAAGAATCTTTACCCAACAGAGGTTCGTTATCAAAATCA
GAGAATATTTCAGATGGATCTTCTTCACTTCCACATAAACTATCTACTGA
TTGTTTGTCAGCATCCATCTTTTGTATTTCCTCTTTTAagtcaaattctt
ttgatagaTCACTTACAAAAAAGAGAGACATAGCAAAAGCTACTAGGAAT
GCGATTGATAACGCTAATCCAGCTCCATTAGCATACCCGATCGGTATACC
AAGTAGTGTAAATCGTGCTTTCAcaaaagcaaaattaattgcCGGACCAA
GTGTGAAACCAATACCATAGCTAACACTCATCGTCGACATTTGTGCCATA
ACTTCATCACTAGGATATGACCTGGTCAATTCAGATAACATAATCGGTCT
CAGGGAGCCTCCAGCTCCGGAAAGGAAACGTCCGGCTAACAAGAGATACG
GTGAGAATGGGATTGTGTACAAAACATTTCCAACAAATGTTATAAACGTA
ACGAGAGTAAAGAAAAGTTTTAATGTTCGACATTTATCAAACAAGCGGCA
TAAAACCAACGATGCAACAATCTGTGTCAAAACGTATATTCCACAAATAC
TGCTATAAAAAGCATTAAGGTTGTTTGTGATGTGTAAAACGTCCTTTAAG
TACACGTACAATGTTGTAAAAGTCATCGAATATTCAATACCTATCGCAAA
TTGAACGGCAACAAAAACTCTGGTagttatttttcgttttttgagcCAGT
CTTTGTAGCTAAAATCAACTGCAACCATGTTGTGCTCAGTTTCGTCCTGC
AATGAGATAAAGGAAGGTATCTTGTAAGCTTAAAGTGCAAAAGTGTCTTT
TGATTAATCAATATCAATAAGTAATAGATGATTCCATTAAAGAGTGCTCG
ATGACCAGGACCAGAGCTTCATACAGTAtacaagaaaaaatcaaaatttg
aattatagtaCTTCAAATTTCATCTTTATCGAATCGTCAGCTATCA Run BLAST on NCBI transcript from alignment at sc0000167:24000..26545+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013353 ID=TCONS_00013353|Name=TCONS_00013353|organism=Clytia hemisphaerica|type=transcript|length=2546bp|location=Sequence derived from alignment at sc0000167:24000..26545+ (Clytia hemisphaerica)
AGGTCTCAGCTTTTATGCAggaatcaaaattttttgatggtattttgaaa
gatttgtcTGACATTCTAACGATTTTAAATGGAAATGCATCACGTTTATA
AAATAGATTCGTCTTAAATTAATTGTTTTCAATTGTAATATTAAGATCTA
AAAAGGAAGCACTGTTATCTCCGTGTTCTTTCTTTATTAATTCAAGTTAC
GAGATTTCAGCTTTTCAATGAAATAGACTTTATTAAGTTcgttacaaaaa
aatttttatcattaaattatatttttcttctACTTTCCtgtaaatatttt
acttttattaaATCACCATTCTCGGATTTTGAAAGTGTTCCTTTCTCCAA
ATCAAGAAAAGCATCAATACCAAAGATATAGCCATGAATAGTGGACAAAC
ATATAGGATATGTTCAAAGGCGAAGGCTGCAGTAAACAAACCAAGAGTTG
CTCCAAATCTGGAGCACATCAAACGAACGCTTTCAGAAAATGATTGAATC
TTAGATGGAACCATTTTGGCCAAAACACTCATCATGAATATCTCATCAAC
GATGGCAATAGGAGACATCATAAAAGGATAAGTAACCCATAATGCCACAT
TGATCCATTCCATGCTGTTAACCAAACggaaatataaaaaacatcCAAAC
GGGTAGCATGTGGTTACAAAACTCAAAATCCCAAGATTGACCAACTGATT
CTTCGATGGTGGTTTGAATACCAAGAACAAACACATTAAACTGATGATGG
TACCATTGAACAGAAAAATGAGATTGATTTCCAAGGCTGTCCAATGCAAT
AGTTTTATAACTGCCATGGGTATCCATAGATCTTGCATTAGCATTGTGAT
GAAGGCGAAAAACGAGAgaacaaaaataagaacaatatcTATTGAAGAGA
ACAACTTCATAATAGTCTCTATTATTCCTAATTGGACTTCTGTTCTATTC
TCGGAAGAATCTTTACCCAACAGAGGTTCGTTATCAAAATCAGAGAATAT
TTCAGATGGATCTTCTTCATTTGCACCACATAAACTATCTACTGATTGTT
TGTTAGCATCCATCTTTTGTATTTCCTCTTTTAAGTCAAATTCTTTTNTT
GAATCTTAGATGGAACCATTTTGGCCAAAACACTCATCATGAATATCTCA
TCAACGATTGCAATAGGAGACATCATAAAAGGATAAGTAACCCATAATGC
CACATTTATCCATTCCATGCTGTTCACCAAACGGAAGTACAAAAAACATC
CAAACGGGTAGCATGTAGTTACAAAACTCAAAATCCCAAGATTGACCAAC
TGATTCTTCGATGGCGGTTTGAATACCAAGAACAAACACATTAAACTGAT
AATGGTACCATTGAACAGGAAAATGAGATTGATTTCCAAGGCTGTCCAAT
GCAATAGTTTTATAACTGCCATAGGTATCCATAGATCTTGCATTAGCATT
GTGATGAAGGCGAAAAACGAGAgaacaaaaataagaacaatgtcTATTGA
AGAGAACAACTTCATAAGAGTCTCTATTATTCCTAATTGGTTCACTTCTG
TTCTATTCTCGGAAGAATCTTTACCCAACAGAGGTTCGTTATCAAAATCA
GAGAATATTTCAGATGGATCTTCTTCACTTCCACATAAACTATCTACTGA
TTGTTTGTCAGCATCCATCTTTTGTATTTCCTCTTTTAagtcaaattctt
ttgatagaTCACTTACAAAAAAGAGAGACATAGCAAAAGCTACTAGGAAT
GCGATTGATAACGCTAATCCAGCTCCATTAGCATACCCGATCGGTATACC
AAGTAGTGTAAATCGTGCTTTCAcaaaagcaaaattaattgcCGGACCAA
GTGTGAAACCAATACCATAGCTAACACTCATCGTCGACATTTGTGCCATA
ACTTCATCACTAGGATATGACCTGGTCAATTCAGATAACATAATCGGTCT
CAGGGAGCCTCCAGCTCCGGAAAGGAAACGTCCGGCTAACAAGAGATACG
GTGAGAATGGGATTGTGTACAAAACATTTCCAACAAATGTTATAAACGTA
ACGAGAGTAAAGAAAAGTTTTAATGTTCGACATTTATCAAACAAGCGGCA
TAAAACCAACGATGCAACAATCTGTGTCAAAACGTATATTCCACAAATAC
TGCTATAAAAAGCATTAAGGTTGTTTGTGATGTGTAAAACGTCCTTTAAG
TACACGTACAATGTTGTAAAAGTCATCGAATATTCAATACCTATCGCAAA
TTGAACGGCAACAAAAACTCTGGTagttatttttcgttttttgagcCAGT
CTTTGTAGCTAAAATCAACTGCAACCATGTTGTGCTCAGTTTCGTCCTGC
AATGAGATAAAGGAAGGTATCTTGTAAGCTTAAAGTGCAAAAGTGTCTTT
TGATTAATCAATATCAATAAGTAATAGATGATTCCATTAAAGAGTGCTCG
ATGACCAGGACCAGAGCTTCATACAGTAtacaagaaaaaatcaaaatttg
aattatagtaCTTCAAATTTCATCTTTATCGAATCGTCAGCTATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013353-exon-sc0000167-1491911889:24000..26545 | TCONS_00013353-exon-sc0000167-1491911889:24000..26545 | Clytia hemisphaerica | exon |
| TCONS_00013353-exon-sc0000167-1510915933:24000..26545 | TCONS_00013353-exon-sc0000167-1510915933:24000..26545 | Clytia hemisphaerica | exon |
| TCONS_00013353-exon-sc0000167-1575043694:24000..26545 | TCONS_00013353-exon-sc0000167-1575043694:24000..26545 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000167 | supercontig | sc0000167:24000..26545 + |
Blast
The following BLAST results are available for this feature:
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