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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013357 ID=TCONS_00013357|Name=TCONS_00013357|organism=Clytia hemisphaerica|type=transcript|length=4787bpRun BLAST on NCBI transcript from alignment at sc0000167:69866..81800+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013357 ID=TCONS_00013357|Name=TCONS_00013357|organism=Clytia hemisphaerica|type=transcript|length=11935bp|location=Sequence derived from alignment at sc0000167:69866..81800+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013357 vs. Swiss-Prot (Human)
Match: RABX5 (Rab5 GDP/GTP exchange factor OS=Homo sapiens GN=RABGEF1 PE=1 SV=2) HSP 1 Score: 288.886 bits (738), Expect = 2.240e-82 Identity = 158/408 (38.73%), Postives = 245/408 (60.05%), Query Frame = 3
Query: 492 SPSMGRRSALNLQDVKDEIRSTSKEFVEFLKAFKRPASKDIKERSKEFIFRILQSHELSIDKQSEMVQDFYTKMANRIQ------------------------------------MNPSYSNMSAEKMEFMMDGIEKYIMTHIYKGVFCHPSAGDEKKDLELQRRLHSLNWITWEQLEIPIDFESESVDKLMRKAITELLEMNTKRAPQDKLASLVKCCLTIFQLLQGTSGEFIASADDFLPVLIYVVLKTNPPLLHSNIQYITRFCNPNKLMAGEGGYYFTNLCGAISFLKELDASSLNLSQDEFDSYMKGEKPLRQTKVKQRKYTVTCDGLEGMQQNLEEISQLREHQSKTLEQCRTTRKEMDEFRENVKKQIAEIMQNKHEGSLKHLEQYLTKPEVETVNQSQEP 1607
SPS+ R++++ E SKEF+EFLK F + ++I +++K F+ + +LSI++QSE QDFY +A R+Q + P + + E++E +MD IEKYIMT +YK VFC + DEKKDL +Q+R+ +L W+T + L +P++ + V ++ KAIT+++EM++KR P+DKLA + KC IF ++ T E ASADDFLP LIY+VLK NPP L SNIQYITRFCNP++LM GE GYYFTNLC A++F+++LDA SLNLSQ++FD YM G+ R+ + + C G++ M +NL+ +SQL E Q + + + + K++ ++ + + +++ +I++ K+ +K Q L + E V + P
Sbjct: 302 SPSINRQTSI-------ETDRVSKEFIEFLKTFHK-TGQEIYKQTKLFLEGMHYKRDLSIEEQSECAQDFYHNVAERMQTRGKERRFHHVGQAGLELLTSGDPPASASQSAGNTGVEPPHPAVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNE-PASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQEAESWSPDA-CLGVKQMYKNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAREVQDIVE-KYPLEIKPPNQPLAAIDSENVENDKLP 698 The following BLAST results are available for this feature:
BLAST of TCONS_00013357 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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