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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013361 ID=TCONS_00013361|Name=TCONS_00013361|organism=Clytia hemisphaerica|type=transcript|length=2907bpRun BLAST on NCBI transcript from alignment at sc0000167:91194..98341+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013361 ID=TCONS_00013361|Name=TCONS_00013361|organism=Clytia hemisphaerica|type=transcript|length=7148bp|location=Sequence derived from alignment at sc0000167:91194..98341+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00013361 vs. Swiss-Prot (Human)
Match: LIN41 (E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens GN=TRIM71 PE=1 SV=1) HSP 1 Score: 349.747 bits (896), Expect = 8.745e-105 Identity = 203/663 (30.62%), Postives = 340/663 (51.28%), Query Frame = 1
Query: 739 NCVENLCENCVTAHERIRQTKSHRIVSFEELQN----------------------NTVDESIRCPSFCKIHDREILKYFCESCDSAICRDCAIFEHREHNYLDLKEAVKSHGKQLLQLLGNTKQKVPILKNALDSILQVENNLQQRKEKIEESINQSVDSHIQLLEEKRKYLLQQAQDMTSAKDNVLQEQFKRLHFDLDNVVSSCEFVDNIVLYGNEAEFMDVKYFMLSRLHALSEHKIQLVPEENDVFCFSQNNQNLMTGTRDFGILTTSQAFAPFCFASERNETLIKTGYLSSFQVVLNNRNSERITHGGDDVSAAMVNTEGERIPVDVIDNQNGSYTIKYKVNAKTDHFLQVTLRGRPIHGSPFTISVSTGIDSLRIGPVLTWFGSNGVESNGKINEAYEPWGICCNSRDHVIVTDHNNHKIQIFDQNGKLLRQFGSRGKNDGEIWYPTGICVDKNDDIFVADHGNHRIQVFTPEGRFVRKIGGRGNMDGLFKGPCDIAIDLQNRLIVADRDNHRLQVLTVDGKFLFNIGSYGNSEGKFDSPRHLTITNGNHIIVSDSNNGRVQRFDENGQHLGILGKKGSNAGQFQCPAGLCTDTEDNLVVADFKNLDVQLFDKMGVFVKKIGE-----GVFSKPTSLCVTTSGNIFVADRGNHKIYLF 2646
+C E+LC+NCV AH+R+R TK H I + E + FC+ HD E+L +C++C ICR+C + H H+++ L+EA++ +QLL + +Q ++ +++ V ++ + + ++ + H + LEE+ LL + + + K L Q ++L +L+ + S+ V ++ G + + + ML+++ L + L P+E+D F+ +Q L + FG ++ S AFAP A+ G ++SF V+ + + E GGD +SA ++ +G +V D QNG+Y + Y+ + +H + VTL + I SPF + V +G + IG FGS G +S+GK+ PWG+ + ++IV D +N++IQ+F G +FG+ G G+ P G+ D + I VAD NHRIQ+FT EG+F+ K G +G +G F P D+A++ + +++V+D NHR+Q+ DG FL G G FDSPR + + H++V+D NN R+ + Q LG +G+ GQF P G+ D E ++VAD +N VQ+F+ G F+ K G G +P+ + +T G I V D GN++I +F
Sbjct: 214 DCQEHLCDNCVRAHQRVRLTKDHYIERGPPGPGAAAAAQQLGLGPPFPGPPFSILSVFPERL---GFCQHHDDEVLHLYCDTCSVPICRECTMGRHGGHSFIYLQEALQDSRALTIQLLADAQQGRQAIQLSIEQAQTVAEQVEMKAKVVQSEVKAVTARHKKALEERECELLWKVEKIRQVKAKSLYLQVEKLRQNLNKLESTISAVQQVLEEGRALDILLARDRMLAQVQELKTVRSLLQPQEDDRVMFTPPDQALYLAIKSFGFVS-SGAFAPLTKATGDGLKRALQGKVASFTVIGYDHDGEPRLSGGDLMSAVVLGPDGNLFGAEVSDQQNGTYVVSYRPQLEGEHLVSVTLCNQHIENSPFKVVVKSGRSYVGIGLPGLSFGSEG-DSDGKL---CRPWGVSVDKEGYIIVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQFDRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLFGPDGVFLNKYGFEGALWKHFDSPRGVAFNHEGHLVVTDFNNHRLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESNGSFLCKFGAQGSGFGQMDRPSGIAITPDGMIVVVDFGNNRILVF 868 The following BLAST results are available for this feature:
BLAST of TCONS_00013361 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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