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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013363 ID=TCONS_00013363|Name=TCONS_00013363|organism=Clytia hemisphaerica|type=transcript|length=1107bp
TTTAGAATGAAAATACTAAAAGAATTAACAGAAAAAATGAATTGGTCAAT
GCAATCTAGAAGAAAGGATTGCCATACCAAAAATAGTGAGACCACCAGAA
GGAAATTAGAACTTTTTTACCAATAGTTGGACACAGGatgacatttttaa
aagaatgatgCCCAAATCGATTAAACTAACGTAAACTAACAACCAATTAA
CAAATGATGTCGTTTTTAGAAGCAAGGGTGTAAAAATTTTAGTACTGTTT
AGTGTTACAACACAAGAAGATATTGAGTTTCGAATGAGATCGATCATTAC
CTATACAAACAATTTGGACAAACTTGAGATAAAGATGCATAAAAATGCAA
GTAAAGTATTGGTCGGGGTCATCCATGAGGGCCTGTGCACGGAAATCCGA
TGTATGAAACACCGACAAAAAAATGGAAGAACCCAATATTCACTGGAAGa
tcaTGAAGAATTTCCAGTATAGCGTTCATCAATTAATTAAACAGTCGAAA
GACATAAACGCTTAGTCAAGAATGATGATGCATTCAGAAAGAAACTGGTG
AATCAGCTTTGATTTGCTACTGTTTATTATCGTAATCTACACgatgaaaa
tttatttggctCTCGACCCGTCGGAGTGATATTGAGCAAGATTCCATTGG
AAATGGAATATATTGCATATGATGTGGCATATTgtatttggaaaaatgaa
agacTGTTGTTGTGGAGATCATGGCGTGCCAGGGCGCTTGTTGTAAGATT
GATAGTTTTTTAAATGCTTTCTTATTTATAAATGTTGTCTTTGGCTGACA
GAAGGGTGATGAtttattttagattattttttgtttatgaaaatttcaat
caagGACCTATACTAAAGCAGTAGCTGGTTTTGGTTGGAAAGTAGCAAGC
TCATGCAGAGGTTCCATGGCTTATACTGTGAAGACCTACCTTTACTTACC
GTAACTATCAAAGATTCGTAAATTTAGTATGTTGAAAACCTTAGGATCGG
GGGGAAAGAGAATGAAAAAACTAATTCTTTTGGTTTATGTGATCTTAGTG
ACAATATTCTGACTAATGAAaggtttttttagattttcatccAATTCTCT
TAGGTTC Run BLAST on NCBI transcript from alignment at sc0000167:102392..107023+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013363 ID=TCONS_00013363|Name=TCONS_00013363|organism=Clytia hemisphaerica|type=transcript|length=4632bp|location=Sequence derived from alignment at sc0000167:102392..107023+ (Clytia hemisphaerica)
TTTAGAATGAAAATACTAAAAGAATTAACAGAAAAAATGAATTGGTCAAT
GCAATCTAGAAGAAAGGATTGCCATACCAAAAATAGTGAGACCACCAGAA
GGAAATTAGAACTTTTTTACCAATAGTTGGACACAGGatgacatttttaa
aagaatgatgCCCAAATCGATTAAACTAACGTAAACTAACAACCAATTAA
CAAATGATGTCGTTTTTAGAAGCAAGGGTGTAAAAATTTTAGTACTGTTT
AGTGTTACAACACAAGAAGATATTGAGTTTCGAATGAGGTACCTTtatat
cggccaaaacttagtcggccctaattttagtgacctcgtcaaaatttaat
cACTAAGGGctgactaataattaagacagactaaaaatttgggccatttc
taaatttacaagcagatggaaaataggagaaagcttaattataaactttt
aatttggcccaaatatttagtcggccctaattttatgggaccccagcccc
gctgaaaaatttgacaaaaagttcGTCCCCTGTaggaaaataccctagaa
tttcataCCCACTGgggaattgactttgatttcatcccccattcaaaatt
caatgtttaaaatttatactccaaaaccatccccattggatttttttaat
ctttgaacaatagaatttttatccccgctgtgggaaaaagtttcaccggg
gctgtgataCAGGGGCGTGGTAGTTAactctttttattgaaaaatccaAC
CTTATTGAACCTAAAGTCAGTTTTTCCTCATTTCATATTGACAGATCGAT
CATTACCTATACAAACAATTTGGACAAACTTGAGATAAAGATGCATAAAA
ATGCAAGTAAAGTATTGGTCGGGGTCATCCATGAGGGCCTGTGCACGGAA
ATCCGATGTATGAAACACCGACAAAAAAATGGAAGAACCCAATATTCACT
GGAAGGTAAGAATTATtcctctttttgatttttttcatttagaaatttgc
tATTATAAAAATATCAATCCTGGAAAGATCTAAAATTTCACTCTGTCTCG
TATTGCTTGCTACTTAAATAGTGAAAAACCAAGATTTTATTATATCGCGA
TTATATCGTCGCGATACCTCCTCTTGAATGAGtgtcatttattttgaaat
aaagccACTGTCTTCtttgaaagaaattaaaaatgtaatggatacaatga
aaaaatttaggttgaaatatataaatttaaataaaatcttGACTTAAAGA
AATCAAGCAGGAATCTCCAGCAcctattttgttgaatttcataACACGTG
TTTGGCATCTATTTTCCGTAAGCGTAAATTTTTTGAACTCTAACTTTACG
GCAAACGCGAACACGTCGACAACGTCGGACAGGTTTACAACGTAATTCAT
ATCTTGGCTTTTGGTAAGAACCTTTGCTTCCGCTGTATTTGACGGGAATA
CGTACACGCGAACATTTCCTTGACGAACGGCATCTACGAACGTATCGACA
TTTTTTCCGGTAGTATGAAGGATCTTCGATTTCTTAATAagaaaaaatgt
ataaaatgtaCTCTTTTTGTTAATATTGAGAACAAGAGAAATGGATAAGC
TTTTCAGTTAAGTAGTTTAATAAGCAAATTTAAGAgtcaaaaatataaaa
ggaGTAACAAGCCTATTCCGCCATGAAAATGAGAACAAGACTAGAAGCTG
TTCTTGAAGCGGCAAAAAAATAGAGCAGCTTGGCCTCAAAAACGTTTAGC
TGTTTCCTATGTTAGAAATAGTTTATACACCTTTTTCTCACAGACTTTTg
taggattttttttcagccagtgggggtaaaaataacggactgaaactgga
tggggattgatattcccatatcttttatggctggggatttaaattccctt
gtttttaagtcagaaaattcagtggggattggaaaaatagcataatattt
tacagtgagcgtttatttgattatttgcAGTGGGGACAAAAACTCAAGTA
TAGTTTTCccggacgatattttggccaattattccagtgggaagggatcc
taatgggtctgtgagaaggttGTGTGTGTATACCTTCATCGAGTTCATCT
TTATCTTCTTCATCATTCATTGGTGAATCTTCCAATGCGTCAAAAACATC
TTCTGAAGTGGAAAGGTTATTTTCCTCGTCTGGCACTGTTGGTGCACCTG
TAAAATGAGATATCCCTTAGTAAATTGAATTTATTAATAAAGTCTACAGT
GAGCGTTTTTCCTTAAGAAGATTGGTATTttagcaaaacaaaatgaactg
tatacacgttttcttagaaaaaaatataagaacataaggcttcggtgaCA
AAAATATATGAACAAATAAAGAACAGGCTTTTTAACAAttctttttagga
aaatggacaaaaataaatactcacgtaatggtgaaaaaaaagaacattat
ttggattgaaattaaagaagttaagaacatccaaaggcttcaaaaatttt
tcattttcttgtaaCAAACGTTTAGGTCTGCAAATCTTTTCACTTACATT
GTACAACCATGAAGACAGCAGCAAGCAAGAAAACCAACTTCATCATAGTC
ATGTTCTGTTTTTTAACGATACTCTTTTCTTCAGTTATCTTTACTTCTTC
TTTGAATGTGTTATCAGCTTTGAATGATTCCATTTACTTTTCATGGCGCT
TTTATATACCATTACTGCGCATAAAGTAATGACATTCAAACAGCTGGACT
CgtgtaaaattcatgaaaattagAGTAAGCTAGCTGCTTGCCAGCCGCCA
GCCCACTTTATAAATCTGCGGTTCATATATAGTTCATATTTACGGCTCGT
ATCGTTAGAATAATGACTTACAGCCAATTAAATGTCTGATTATATTCCGT
CTAATGACCTTATGGAagtaattttcagaaaacaattgacaGTCCATGCA
TTTTCATAGATTGCTTTCGAAATTTCGCACACTAATTTTCACTCATTTTA
GAATACTGCAACAACGGGGCTACAATTTTTGACCTCCTAGTTAAATATAT
CTATGTTTACTTCATAGCTTTACTCTATTAATAGTTACAGGCAGCCTCCG
AGAAGATGACTCTTTGGAGCTCAAGCCCctgttttttcactttttcgtgT
CAACGGGTCACCTTCTAAGAGCTTGTAACTACTTCAAGTATACGACTTTC
CCAGTGCACTGTAGCAAAATCAATTTCCAAAACAGTGTTTCCTTCGTGCA
TCGTTTGAAATTTCCCATGTAACAATACTGTTTTTTCAGGAGTATTGATT
TTACAACCCTATTTTATTATAGATAGACTTTTCAGTGCTATCCAACcctc
taaataaatttttagacctctttttatcaaatttttgtcaTCAAATAATT
GAAAGGAGACCctctattttattttgaagatcaTGAAGAATTTCCAGTAT
AGCGTTCATCAATTAATTAAACAGTCGAAAGACATAAACGCTTAGTCAAG
AATGATGATGCATTCAGAAAGAAACTGGTGAATCAGCTTTGGTAAGGATT
CTTTTCTGAAAAGTTGACGTAAAGTTGAATAAAGTGAAAGTAGTTGAAGT
TGGTAGTAAAATAAACGGATTGTGATTTAAAGTCTGGTTAATATTGCGTA
CCACAAGTGAAAGCCCCGCAATTATTGTTGCTGATGACTACTTCTTCACA
CGCGGTGCTTCTAAATCTTAAGGATTTTATGAgctagtgggggtaaaaat
aacaagCCAAAACTCGATaagattgatattcccatgtttttttttggttg
aGGATTtcaatttccattgttttctagtcATAGAAATTCAGTGCCGATGA
AAAAAATggtacaatattttgcagtgaggatttgcttttCTGAATTTTAC
CACGGGGAAGGTTTCCTGGTGGGTCTGTTAGAAGGGGGTGTACTAAAGAT
TAAGCTTTAGAGAAAGTGGCATGACATACTGTATCTTCCGTGCTCTATTA
CATACTTTTTGATAGTGAAAAGACTAGGTTTTCACTTAAAAGTCGTTGAC
GGTTATCCAGGTGAAAATAGATGACTTTGTTTTTAGATTTGCTACTGTTT
ATTATCGTAATCTACACgatgaaaatttatttggctCTCGACCCGTCGGA
GTGATATTGAGCAAGATTCCATTGGAAATGGAATATATTGCATATGATGT
GGCATATTgtatttggaaaaatgaaagacTGTTGTTGTGGAGATCATGGC
GTGCCAGGGCGCTTGTTGTAAGATTGATAGTTTTTTAAATGCTTTCTTAT
TTATAAATGTTGTCTTTGGCTGACAGAAGGGTGATGAtttattttagatt
attttttgtttatgaaaatttcaatcaagGACCTATACTAAAGCAGTAGC
TGGTTTTGGTTGGAAAGTAGCAAGCTCATGCAGAGGTTCCATGGCTTATA
CTGTGAAGACCTACCTTTACTTACCGTAACTATCAAAGATTCGTAAATTT
AGTATGTTGAAAACCTTAGGATCGGGGGGAAAGAGAATGAAAAAACTAAT
TCTTTTGGTTTATGTGATCTTAGTGACAATATTCTGACTAATGAAaggtt
tttttagattttcatccAATTCTCTTAGGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013363-exon-sc0000167-1491911889:102392..102679 | TCONS_00013363-exon-sc0000167-1491911889:102392..102679 | Clytia hemisphaerica | exon |
| TCONS_00013363-exon-sc0000167-1510915933:102392..102679 | TCONS_00013363-exon-sc0000167-1510915933:102392..102679 | Clytia hemisphaerica | exon |
| TCONS_00013363-exon-sc0000167-1575043694:102392..102679 | TCONS_00013363-exon-sc0000167-1575043694:102392..102679 | Clytia hemisphaerica | exon |
| TCONS_00013363-exon-sc0000167-1491911889:103186..103346 | TCONS_00013363-exon-sc0000167-1491911889:103186..103346 | Clytia hemisphaerica | exon |
| TCONS_00013363-exon-sc0000167-1510915933:103186..103346 | TCONS_00013363-exon-sc0000167-1510915933:103186..103346 | Clytia hemisphaerica | exon |
| TCONS_00013363-exon-sc0000167-1575043694:103186..103346 | TCONS_00013363-exon-sc0000167-1575043694:103186..103346 | Clytia hemisphaerica | exon |
| TCONS_00013363-exon-sc0000167-1491911889:105821..105932 | TCONS_00013363-exon-sc0000167-1491911889:105821..105932 | Clytia hemisphaerica | exon |
| TCONS_00013363-exon-sc0000167-1510915933:105821..105932 | TCONS_00013363-exon-sc0000167-1510915933:105821..105932 | Clytia hemisphaerica | exon |
| TCONS_00013363-exon-sc0000167-1575043694:105821..105932 | TCONS_00013363-exon-sc0000167-1575043694:105821..105932 | Clytia hemisphaerica | exon |
| TCONS_00013363-exon-sc0000167-1491911889:106478..107023 | TCONS_00013363-exon-sc0000167-1491911889:106478..107023 | Clytia hemisphaerica | exon |
| TCONS_00013363-exon-sc0000167-1510915933:106478..107023 | TCONS_00013363-exon-sc0000167-1510915933:106478..107023 | Clytia hemisphaerica | exon |
| TCONS_00013363-exon-sc0000167-1575043694:106478..107023 | TCONS_00013363-exon-sc0000167-1575043694:106478..107023 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000167 | supercontig | sc0000167:102392..107023 + |
Blast
The following BLAST results are available for this feature:
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