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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013370 ID=TCONS_00013370|Name=TCONS_00013370|organism=Clytia hemisphaerica|type=transcript|length=3157bpRun BLAST on NCBI protein sequence of TCONS_00013370-protein >TCONS_00013370-protein ID=TCONS_00013370-protein|Name=TCONS_00013370-protein|organism=Clytia hemisphaerica|type=polypeptide|length=448bp MVHRVYSDLHSLLGIPLVNMRIHNNPEDKKLPPILTAHMGNDPSKTTLLVRun BLAST on NCBI transcript from alignment at sc0000167:145679..156667+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013370 ID=TCONS_00013370|Name=TCONS_00013370|organism=Clytia hemisphaerica|type=transcript|length=10989bp|location=Sequence derived from alignment at sc0000167:145679..156667+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000167:145679..156667+ >TCONS_00013370 ID=TCONS_00013370|Name=TCONS_00013370|organism=Clytia hemisphaerica|type=CDS|length=17511bp|location=Sequence derived from alignment at sc0000167:145679..156667+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013370 vs. Swiss-Prot (Human)
Match: CNDP2 (Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2) HSP 1 Score: 451.44 bits (1160), Expect = 6.389e-147 Identity = 236/468 (50.43%), Postives = 299/468 (63.89%), Query Frame = 3
Query: 186 DTTIDRSINLLADYCAIKSVSGDETLRPECFTMVHRVYSDLHSLLG-IPLVNMRIHNNPEDKK--LPPILTAHMGNDPSKTTLLVYGHLDVQPAPDPENWVHQDDPFKLTKVPATGGTFETIKYYARGSTDDKGPVLGWINAIKAYQDLNMEVPVNIKFLFECMEESGGIGLEQLI-EEQSAFFEGVDAVCISDNYWLGLTKPCVTYGLRGISYYNVTIECAAGDLHSGVYGGTVREAMIDLINIFSQLTDGKGGIKIDGVNDDVLVMTDDELALYGPIDFDPEEYRKEIGTKELLYPDKVGTLTHRWRYPSLSIHGFVGASDGNEDQTVIPRQVKGKFSIRLVPNQDPADIDAKVEAYVKKLHTQSGSKNPLTFVATTSAPAWVSDNTDANYKAGINAQKRVYGIEPDLTREGGSIPVTLTLQNATNSSVMLLPIGQSDDGAHSQNEKMSERNYINGAKVLGTYLNE 1577
D DR I LA + AI+SVS R E M+ +D+ L G + LV++ P+ + LPPIL +G+DP K T+ +YGHLDVQPA + W +PF L + K Y RGSTDDKGPV GWINA++AYQ E+PVN++F E MEESG GL++LI + FF+ VD VCISDNYWLG KPC+TYGLRGI Y+ + +EC+ DLHSGVYGG+V EAM DLI + L D +G I I G+N+ V +T++E LY IDFD EE+ K++G + LL+ K L HRWRYPSLS+HG GA G+ +TVIPR+V GKFSIRLVPN P + +V +Y+ K + S N WVSD + +Y AG A K V+G+EPDLTREGGSIPVTLT Q AT +VMLLP+G +DDGAHSQNEK++ NYI G K+L YL E
Sbjct: 12 DENQDRYIKKLAKWVAIQSVSAWPEKRGEIRRMMEVAAADVKQLGGSVELVDIGKQKLPDGSEIPLPPILLGRLGSDPQKKTVCIYGHLDVQPAALEDGW--DSEPFTLVERDG--------KLYGRGSTDDKGPVAGWINALEAYQKTGQEIPVNVRFCLEGMEESGSEGLDELIFARKDTFFKDVDYVCISDNYWLGKKKPCITYGLRGICYFFIEVECSNKDLHSGVYGGSVHEAMTDLILLMGSLVDKRGNILIPGINEAVAAVTEEEHKLYDDIDFDIEEFAKDVGAQILLHSHKKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVVGKFSIRLVPNMTPEVVGEQVTSYLTKKFAELRSPNEFKVYMGHGGKPWVSDFSHPHYLAGRRAMKTVFGVEPDLTREGGSIPVTLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRYNYIEGTKMLAAYLYE 469 The following BLAST results are available for this feature:
BLAST of TCONS_00013370 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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