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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013379 ID=TCONS_00013379|Name=TCONS_00013379|organism=Clytia hemisphaerica|type=transcript|length=571bp
ATTTATCCTTTAGCAGTGTTAATATTAACTGAATTAGTTGTTGACATCAT
TCAACTATACGTGTATAAAGTTTGTAGGTGTATTTTTCAGTGATGATGGA
GATACAGTTAGATATAATTTTTAAGGGTGAAATTTAAAGTGTCTAGCAAA
TGGTTACCAACTGCCAATATGGATTACAAAATGCAATAACATCTctgcat
tttgaaattttagaagtATAGAATAATGCCTGTTATAAGTCTCAATCAAA
CCGATCAAACTACCTTTAAAATTTGgatgcaaaagaaaaaagagcttGGA
TATACACAGAAAACACACAGTGCATATTTGCACATTTTCTGGTAACACAT
CTGACTGCTGGTGAGAGTGAAAGTGAACCAGAAACTGATTCCTCAAACAG
CCAACAAAGTGGAACAGATGAAGAAATAATTGTTGCTGATGTTATTGAAA
GTGATGACGAACAACAGTAACAGACTGTTGATGTCACTGGTGGTCTAGAA
CCTGAACATGATGATGGCGATACTCTTCTTCAGCAAGATACAGAgAATGT
TTGATGATCAAATGTACTCTN Run BLAST on NCBI transcript from alignment at sc0000167:237955..241180+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013379 ID=TCONS_00013379|Name=TCONS_00013379|organism=Clytia hemisphaerica|type=transcript|length=3226bp|location=Sequence derived from alignment at sc0000167:237955..241180+ (Clytia hemisphaerica)
ATTTATCCTTTAGCAGTGTTAATATTAACTGAATTAGTTGTTGACATCAT
TCAACTATACGTGTATAAAGTTTGTAGGTGTATTTTTCAGTGATGATGGA
GATACAGTTAGATATAATTTTTAAGGGTGAAATTTAAAGTGTCTAGCAAA
TGGTTACCAACTGCCAATATGGATTACAAAATGCAATAACATCTctgcat
tttgaaattttagaagtATAGAATAATGCCTGTTATAAGTCTCAATCAAA
CCGATCAAACTACCTTTAAAATTTGgatgcaaaagaaaaaagagcttGGA
TATACACAGAAAACACACAGTGCATATTTGCACATTTTCTGGTAACACAT
CTGACTGCTGGTGAGAGTGAAAGTGAACCAGAAACTGATTCCTCAAACAG
CCAACAAAGTGGAACAGATGAAGAAATAATTGTTGCTGATGTTATTGAAA
GTGATGACGAACAACAGTAACAGACTGTTGATGTCACTGGTGGTCTAGAA
CCTGAACATGATGATGGCGATACTCTTCTTCAGCAAGATACAGAGtgagt
gattcttataaatccCTAAATTGCAgtagcaatttttttttactgcaatt
gcggtataaaaattgtttttaaatttttttcacataCCCAGGCAGTGAGT
GTAAATTGAACTGTTCGATTATCCAaccaatcgaacttaatcgaacacct
atcgaacTGAGAAAACTTTTATAAAGTTTGACTGTtccatagaccttttt
gcctttccatccgccatattgaattgtatgctgaaattatggtggccgaa
ttgcagtggccagacgatctcaatcaaacggaattgacgatcgaactagt
cgaaccaaatcgaacgcaatcgaccgattgaaattcgattgtcgaacgca
atcgaatctcaatcgaacgtcaaaattctgggtaatattcgataggtttg
attgttgttgttgtcgggaaacgtcgcccggttcaaaagcgtattgttga
tcagGCCATACTTCTTTCTAACAAAccgtcaaaacaaagatggcagcaaa
acaaagatggcagcaAAAAATGACAATCAGctccagacaatctcaatcga
acgcaatcgaacatcaatcgaacgcaatcgaatatcaatcgaacgcaatc
aaatatcaatcgaatctgaaaattgcggtaatattcgattgagattcaat
tgcgttcgacaatcgaatttcaatcggtcgattggcagtcaggcacatcc
tgccAAATGAAcagggtgagcatttgcatggggtattcgtcacccagtgt
aaatgagataggacgtctcaggctaaaagtgtgaaaatgaataaaaatga
acttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcttcgaag
acaaaattgacccatggaaaaaaaatttcatccatgcagttctttgaaat
gaagcaaaatatttccaacccggttcaattaaactgggtattcggcacCA
TTacatcactttcgttttcgaccccgttcatttgccaatggtcgcaagtg
aaaaataccccgttcatttgccaggatgtgcctgactgattgGTTCCatt
gtcgattccgttcgattgagattgtctggccgTGGTGagattcccttaga
aagtatacaaaacatatgcaaaaaggaagtattaatataaaacttacatg
cataattggcatttaTTAAAGCAATCTTGTTgaagaaagattaaaaattt
gcttctcttgaaatctaaaaatttaaaacggcaattcggccaccatttca
cagaacctctaaagtcatttgatttgagttaaggaacggcgtatttaaaa
atacaggatttcactttcaattttacagtaagtgaaaatacagaccagat
atgcaacagtcccatgtatCGACAATCGTCCCAATTTAGAGCAGTCGACG
Gtacccaaatcaaaacaacattttacatgcaaagaattttttagtagacc
tttttaccgagaactgaaaataataaaaagaacccagtttccttttgaat
ctaatgtgaccgccatactggccgTCACGGCGGGCagcctcttagcgcct
agagcgtgtgcgtgtgtttttgataaataaggaaggggaaaccaggctaa
gtgcgcaaattatttttatcacgtgacttgaagcgtaataaagctgttaa
attttaatgatggatgTTATAAAATTTCAATGATGGATATGAGAAAGTGA
AGAGAAAGTTTGCATGCGCTTCATATGTTGTGTAAAATTGTATATAATTT
GGCttcttttttgattgaaaagattgtaatgtttactgaacttctagttt
gatggatgaacttgtttgataagaatgataccaagaatttcattcaaggt
ttgttttgaataaatataaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNcccttccatggacgaaaatttcataaattgccaaaataa
aaaaaaattctgaccgACCAACCCACCTCCACAATCTAGGGTCAGGTgat
ggcaaaccaacaattattTAAGCTAGATCTATATCgattctttttgtaaa
ttgaAGCAAATTATAGGTCCTGCTTTTATATATCATCACAACTCATTGTT
GGTGCATTTTTATGTCAACAAAACTTGAGTTCACATTTTTGTCTGATTGT
ATGTTTGATGGCTTTTTGAAAGGAACTTATGTTCAAGAGTAGCTTTttta
aaagctatttcaaatttttgctttcgGATCACTCAATGTAACCCTCAATG
TAAATATAATTcggataaaatcaaagaatgaatgactaatttttcatagg
AATGTTTGATGATCAAATGTACTCTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013379-exon-sc0000167-1491911889:237955..238498 | TCONS_00013379-exon-sc0000167-1491911889:237955..238498 | Clytia hemisphaerica | exon |
| TCONS_00013379-exon-sc0000167-1510915933:237955..238498 | TCONS_00013379-exon-sc0000167-1510915933:237955..238498 | Clytia hemisphaerica | exon |
| TCONS_00013379-exon-sc0000167-1575043694:237955..238498 | TCONS_00013379-exon-sc0000167-1575043694:237955..238498 | Clytia hemisphaerica | exon |
| TCONS_00013379-exon-sc0000167-1491911889:241154..241180 | TCONS_00013379-exon-sc0000167-1491911889:241154..241180 | Clytia hemisphaerica | exon |
| TCONS_00013379-exon-sc0000167-1510915933:241154..241180 | TCONS_00013379-exon-sc0000167-1510915933:241154..241180 | Clytia hemisphaerica | exon |
| TCONS_00013379-exon-sc0000167-1575043694:241154..241180 | TCONS_00013379-exon-sc0000167-1575043694:241154..241180 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000167 | supercontig | sc0000167:237955..241180 + |
Blast
The following BLAST results are available for this feature:
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