TCONS_00013395 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013395
Unique NameTCONS_00013395
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013395 ID=TCONS_00013395|Name=TCONS_00013395|organism=Clytia hemisphaerica|type=transcript|length=2390bp
cctgtgacctgtgttttacactaaccggttGTAAGACGTGATGTCATGTT
AAATATAGTTAAAACCTCCAGCGTTATAACAATAACACACACAAAATCAT
ATAGTAAccatattttcttttcattgttttgctTGATGCTGGAGTCATGA
TGATACAACCAATGGTATAAATGctaatgttatttttttatgattttaaa
gAAGATCCAGAACTGTAAGATTAAGAAAGTTTAGAGTCGCATATATTGGG
AAAAATGGTTCAAACCAGTCAAAATTAACTATGAGGCCTACAATGCCCTG
TTTTAACTCTTAAAATAAGGGTATTAAAAATTATCTGATGctcacagaaa
aaaaattctgacaCTGCTTATTTGTCTTTGTAATCAGGATAAAGAAAAAG
ATTATAATATGACTTCGAAGTAATTTTAAAATTGTAAGCTCAGTCTAGCA
GATAAATGAAGTCTAAAAGTGGAAATCAGAATGGCGAGTAGTAAAATTCA
AGATACAGGGTTTAGATTTAAGATATTGAaggtaaaaacaataaaaacgt
caaaatattttaaaaaactagataaaaaatattagaatttAGTGATGACA
ACCCAAATTATCCCTGGAGCTCTGAGGGAGACGAATAATCCGTTACTTCT
TAAGGCTGGCATAGGTAAACCTCAACCTCGCGGTTATTCCATACCTCCTG
ATAGTTTTGCTTATGGAAAGACGAACTGTGGTAAAAGTTATGGTGCCGGA
GATACATTCATTTGGCAGACCAAAATCAGGCCATTGAAATCTAGTGAAAA
ATCTGGAGAAAGAAGAGATTTTATCACGTTGAATAAAGCAGCCACACAAG
CCGGACTGGTCACCGCTCAAGAGCATTTCCAATACCGAGCAACACATTCT
AATGGTAATAAGCGCGGAGATAGTCGCCAAAAAACTGGTGGTTTAGATTC
AACCAAATTACCATTACTCTCTGATAGGGTGTTCGGCCTTCCAACAAAAC
ATGGGCCGgcttatgactttcttgaacatAAATATCAAGACGACTGGCTG
TGTGAAAATCACCGTAATCAGTtgtctgaaaaaagaaaagaacgagAGTT
AAAGAAATGTGCCAGCCGAACTTACTCCGAAACATGTGCATCAAGATTGA
GAAGATATTCCCCCAAAGTTGATGAACGTCCACTCTGGCAAATGCCAAGA
TTCAAAAATCACGCTAAACCCAAACTTCAAACATTTCGAAGTGAAGAAGC
ACGCACGAAAGCCTTTGAACATCACATTAGTGATTCTACATCTCGCACTG
GTGTCATAGGACATGGTATCTATGAAGATGCAAAAAGCTAGTAATTCCTT
CATCCTTCCAATTTTTGTCGTAAATGTAGTATAGAAGATTCTTATTTTCA
TATTAGTGATTtgacagttttttttaaatgaatatattttttaagtataa
ttataattttggggataatttttttaataaccAAGGTGAGAATATCTCTA
GTCAAAAGAGCTTTTTTGTGCGAGTTGGTTTGTCTCAGAAAAATCAGTTT
GTACAAAATAATTAATCAATTGGCCGGTTACGGCCGACCAGGCGATCAGG
TATggtaaaaataatgaaaacggGCATACCAAATTTCGCACCAGGGTAAC
TTCCATCATTTTATATAAGTTTACAGCTGGATATGGTAAAATCCTTCGTG
GACACCACATACTAGCTAATAAATCTAAAAGATTTCTAGAAGTGAATTTT
AAAGCGACTGGACACGAGTTTGATCGGTTGTCAAACAACCCAAACGATCT
TGGTAAAATACCGTAATATTGTGTGATCTGAGGTGTGATCGCTAACAATC
CATCATACCTACCATAAAAGCCGGTCTCCACCTGCGCGCGCTGCGCTTGC
ATCTTTTGTCTTCAATCCTtattgcttggaaaaaagattatgtcataaaa
atgtagcgcgcgctcgaaaaaatttgaacacatttcaactcttttcaacc
gttacgtcagattgcGCCAATGGAATCCTTCACTTTTCTTCTGACCAATA
GCGTGGGGGCTTTGCTCAAACAAGTAATATCGTAACGcgtgcaagtggag
accggccttaaattACTTGGCTCAGACAAGTCTCTTCATCAACAANATCG
CaacgcgcgcaagtggagaccggccttaaattACTTGGCTCAGACAAGTC
TCTTCATCAACAACGATCCTCTCAGAGCTTTTCTCGAACCTTTGACAGTA
TAACCTcaataatatttcaaataataatattatttttgtatttttatatt
ttgtacatatgATTAAATTGAATGATCCTAAAGATAATATATGATTTGAT
AACAATTTAGAATCGTTTCTgttcaatttttagtttgaat
Run BLAST on NCBI

protein sequence of TCONS_00013395-protein

>TCONS_00013395-protein ID=TCONS_00013395-protein|Name=TCONS_00013395-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MTTQIIPGALRETNNPLLLKAGIGKPQPRGYSIPPDSFAYGKTNCGKSYG
AGDTFIWQTKIRPLKSSEKSGERRDFITLNKAATQAGLVTAQEHFQYRAT
HSNGNKRGDSRQKTGGLDSTKLPLLSDRVFGLPTKHGPAYDFLEHKYQDD
WLCENHRNQLSEKRKERELKKCASRTYSETCASRLRRYSPKVDERPLWQM
PRFKNHAKPKLQTFRSEEARTKAFEHHISDSTSRTGVIGHGIYEDAKS
Run BLAST on NCBI

transcript from alignment at sc0000167:388291..396985+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013395 ID=TCONS_00013395|Name=TCONS_00013395|organism=Clytia hemisphaerica|type=transcript|length=8695bp|location=Sequence derived from alignment at sc0000167:388291..396985+ (Clytia hemisphaerica)
cctgtgacctgtgttttacactaaccggttGTAAGACGTGATGTCATGTT
AAATATAGTTAAAACCTCCAGCGTTATAACAATAACACACACAAAATCAT
ATAGTAAccatattttcttttcattgttttgctTGATGCTGGAGTCATGA
TGATACAACCAATGGTATAAATGctaatgttatttttttatgattttaaa
gAAGATCCAGAACTGTAAGATTAAGAAAGTTTAGAGTCGCATATATTGGG
AAAAATGGTTCAAACCAGTCAAAATTAACTATGAGGCCTACAATGCCCTG
TTTTAACTCTTAAAATAAGGGTATTAAAAATTATCTGATGctcacagaaa
aaaaattctgacaCTGCTTATTTGTCTTTGTAATCAGGATAAAGAAAAAG
ATTATAATATGACTTCGAAGTAATTTTAAAATTGTAAGCTCAGTCTAGCA
GATAAATGAAGTCTAAAAGTGGAAATCAGAATGGCGAGTAGTAAAATTCA
AGATACAGGTATATGTACCACAAAACCCACAGGTACctcaaaaccaacaa
ttttaTTTCAGGAGTTCTAGAACaatctaaaatgtttttatcagcATAAC
TGTTTAAGATTATGTTGGCATAATAgtttctttattatttaaaacaaaat
tgagcATTTATTGATTGGGTATAAGCTTTTTATCAAGATTTAACGCTAGA
AATctaacttcaaaatttttgatttttttcaaaaaattgtcaGATAAGTC
ACTTGCTATTGACTAACCTATCaatctttcgttttctattACCTCTAGGC
ATAACACAAATATAGGAAAAAAGTCCTAAGTGCTGTAAGCAATGTGTTTA
TTTTAATTGCTCTCAAAAAACTCACTTTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAAACTCACTTTTTAattgtgggttttgaggt
acatatgagaaaaattgcgagttttagaattttttgatgttgaacacaaa
aatatttatctatttctCAAACATACATCtggaatacaattttgtgaaac
atttttgtcaagaaaaaCTATGCAAAAATACAACAATAATGTTTAGCATA
CATAactcaaaagcttaaaaaagtaTGGATATTACATCATATTTACTAAA
ACTAGACGGTCTAGTCCTGATACTTTGttaaacatattttcaattaaatc
aTAATCtggaatgttcatttttttcctcgAATGGGAATGACCTTTAATGA
CCTTTAATGGCCCAGCTATGATGTCATGAACTGGGTGTTTTCAAGAACAG
TGCCACTCCTAACTTTAGGCTTTAGACAGTGTAACTGAATTGAGTCAACA
GCGCTATCTTCATCTTTTAAGAATCTCTTCAACAAACGACCAATATacaa
cctttttgttttcttggtgGTGTANGTGCCACTCCTAACTTTAGGCTTTA
GACAGTGTAACTGAATTGAGTCAACAGCGCCATCTTCATCTTTTAAGAAT
CTCTTCAACAAACGACCAATATAcaacaaactttttgttttcttggtgGT
GTAGATGGCAGCATACCATCTACCAGTCTCTTTTGTTGGCGGTGCCAGGT
CTTTCCAGCAATTCTTGAGTTTTTGGATGTCGCTTTCATCATGAGTTTCA
TCTTCGGACATTTCGCTTCCTTCAGATTCAAATTCCTCACCTTCCTCATC
TGATGACGAATCCTCCTCAAACAATCGTTTAGAGATTGAATGTTTTTTGG
TTGGTAATATCATCAGTGGTTTGATTCCATTGACTTTATAGCTTGCTTTG
CTGCAAACTGAACGAAGAACATAGACATACTGGGAACTGCTTTAATCCCA
AAGCCAAGCATTTTTGTTGTAAACAGATACATTTAAGTTTTTGCATTTGA
TGAATGTTTCTCTGATCTCCTCTCTCTTCTTCTTTGCTTCTTCTTTTTCC
GTTTCCTTCTTCAGTTTCTCATCCCTGATTTctttgaccttggttgctac
aTCTTTAGCCCTTGTTGAGCTGTGTACCTGAGTCACCCTTGTAGTTGTGG
TTGctttcttttcttcatttgGCTTAACCTTCTTTAttgtcagaaggcca
ggaattTCCTCCAGTTGGATGCTTCTTTCTGCCATCTCCCTTATCAGGGA
CTGAGCCTGGTCAAATTTAGCCTTCCAATAATCAAGAgaaccttttcttt
tgtcaGAAGGAGACATGATGAGTGATGAGACTGGAGTCGATTTAGATGTT
GATGGAGAGATTTCTTCTTATATACTGCTCTGTCAAACTTATCTTGCTGC
ATGAAGTTTACGCTCAATCCACTTGATGTTATTCCAACCCGCTTGGCACA
TGAAACTAATGTATCTTTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACATAA
ATcttttaactttcttttttcgATAACATAATAATTTTGTTGTTCTTTCA
GGGTTTAGATTTAAGATATTGAaggtaaaaacaataaaaacgtcaaaata
ttttaaaaaactagataaaaaatattagaatttAGTGATGACAACCCAAA
TTATCCCTGGAGCTCTGAGGGAGACGAATAATCCGTTACTTCTTAAGGTA
AAATTGTTTTCATTAAGTTTGATATGAAAATGGTAtgttaccttaagtgg
ataaattttcgcgtgttataattttcgcgagacgagaatttaaagatttc
gcgtggattaaatttcgcgaaaatggccaaaattcgcgaaaaccgcgaaa
atttatccacttaacgTATATTGTGAAAAAAAGATCATCTGGTAGCATCC
AATGCTCCCCAAATTTCAAATGCAATTGACAGGAAGGCCATTTCATGAAT
GCTTGTTAGGGTTTAAATAACGTCTTTTTATTGAACAGGTGCCTATCCTA
TTGATTTTGCAATATTCTGCTCATCAAGTTAACCTTTCTTATAGGCTGGC
ATAGGTAAACCTCAACCTCGCGGTTATTCCATACCTCCTGATAGTTTTGC
TTATGGAAAGACGAACTGTGGTAAAAGTTATGGTGCCGGAGATAGTAAGT
GATTCGATCGTATTTaaattaagtcaaaattcatCATTTTCAGTGCTATT
TGGAGTAACCATTGTGCACTTTGTTCTATGTCTTGAAAGatgattttaaa
ttcaaatgagTTTTGCAGGAATGGAGAAATTTAGTAAATAAGTACTTAAA
GTTTTTCATcttgtaaaaattattttttcacttcAGTTTTATAAAAAAGG
TTTCTGAAAATTACGTAATTTTACTATTTAGCATTCATTTGGCAGACCAA
AATCAGGCCATTGAAATCTAGTGAAAAATCTGGAGAAAGAAGAGATTTTA
TCACGTTGAATAAAGCAGCCACACAAGCCGGACTGGTCACCGCTCAAGAG
CATTTCCAATACCGAGCAACACATTCTAATGGTAATAAGCGCGGAGATAG
TCGCCAAAAAACTGGTGGTTTAGATTCAACCAAATTACCATTACTCTCTG
ATAGGGTGTTCGGCCTTCCAACAAAGTGAgttgtttttgcttttattttt
atgAGTTGAGAacttaaattcaaaaattcaaattcattttaataagtgag
aaattaaatttaaattcttCCTGTCGCCATTCCATTCTACGCATGAATCA
TTTTCtcgaattcaatttttttatttcccacactgttaaaaaatattttt
gagattAATAAATACATTCGTAATACAAGACAGTAATCCAGTGTCTCGTG
TATGCGATCGTTCTAGCGGATAGAAGCGTAAACAAACCTAGGTATCTTAC
TCAGAAATTCGTATTATACCCTACTATCCCTCAGGTCTTAGATATTTATA
CATTAATGTCTATAAGAATTTATATTTGCAGTTGTTTAACTTTGTGACTT
TTCATATTTCTAAAGACATGGGCCGgcttatgactttcttgaacatAAAT
ATCAAGACGACTGGCTGTGTGAAAATCACCGTAATCAGTtgtctgaaaaa
agaaaagaacgagAGTTAAAGAAATGTGCCAGCCGAACTTACTCCGAAAC
ATGTGCATCAAGATTGAGAAGATATTCCCCCAAAGTTGATGAACGTCCAC
TCTGGCAAATGCCAAGATTCAAAAATCACGTGAGTATCCTTCATTTGATT
TAAGGTCCGCTGGGTCGCTTTGCCTTTATTCCCTGTTCACTTCAATCTGA
AGTTGGCCTGTGGTAGCTACCTAGGAGATTTTGTGAGAAagttaaaaata
aatgaaatacgGATNAAAAGGCACCTTTAAGGCCGGCATATACCAATACC
Cttccttctcttgcctaagcaccccccgggctgccttttttcgacgaatc
gcgtgttatgtctattatttcactccgcttatcttgacaaagttttccta
aacatcaagaaatacggcaaatataacgcgagcgatgcgagaaaaaaaat
ctaattgcagagccgtctcggacgtcgccggtatggtgtaatttgggaat
ggcgccctttctgctttctgatcatttttgccacaaaaatatttttcaaa
ctatggttaaaagatacgtcacccgggagggatagagtcaaactttgaag
agaattcttccctttaattttgatttcatcgtgtttaagggGTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
gggtgtttaagccaccttcccaacatccaaaggactttaaatgcgttcag
caaacagctaaaccggcgtgcgacgccgggtaccggctagtttgaTTTAA
GGTCCGCTGGGTCGCTTTGCCTTTATTCCCTGTTCACTTCAATCTGAAGT
TGGCCTGTGGTAGCTACCTAGGAGATTTTGtgagaaaagtaaaaataaat
gaaatacgGATGCAATGAAGGAGCtccaaaaacaaaatgaagtaaaaaaa
cTTCTTGCTTTTGATGGGTGGAGGttctaaattttaaagtttACAGATTC
CTAAAATTCCTGAAAACTCCAGAATTTATCATACTGGTGATAAAGGATCA
TCGTAGTTTCCAAATAGGTTTTATCCTTTTTTTTCTGGGAACGAATTCTC
ACCAAATTTTCTAACGGGTCTTTGACATAAAGGTTATTTTAAGACAGAGA
ACTGAAATATTTGATTACAGGGGTGTAAGTatacgtaatagttatcgggT
AGTTGCGAGTACGacatgaaaaatgttttacgagctccgagatttttccg
ttcAATATTTACGTTAAAATACACGGAAAATCCGGaatgagtgaaatatt
tccatattgtacgagcaaatgtctgaactggtttatcggtgacccaaaaa
aatgcactttttggaaaaaaagcgCGGGACACTTTTGTAgaaaagtgacg
ttagattgcttctaccgctacaatgcaacaacatattttcgtcaatttat
attttgtacaagtaaaatacaagatatattgtactctttttaaccaatca
gattgctgatattttttggatcgccgatacaTGAAATTCTCATTTAACTA
CGTTTTATTTCAATCAGGCTAAACCCAAACTTCAAACATTTCGAAGTGAA
GAAGCACGCACGAAAGCCTTTGAACATCACATTAGTGATTCTACATCTCG
CACTGGTGTCATAGGACATGGTATCTATGAAGATGCAAAAAGCTAGTAAT
TCCTTCATCCTTCCAATTTTTGTCGTAAATGTAGTATAGAAGATTCTTAT
TTTCATATTAGTGATTtgacagttttttttaaatgaatatattttttaag
tataattataattttggggataatttttttaataaccAAGGTGAGAATAT
CTCTAGTCAAAAGAGCTTTTTTGTGCGAGTTGGTTTGTCTCAGAAAAATC
AGTTTGTACAAAATAATTAATCAATTGGCCGGTTACGGCCGACCAGGCGA
TCAGGTATggtaaaaataatgaaaacggGCATACCAAATTTCGCACCAGG
GTAACTTCCATCATTTTATATAAGTTTACAGCTGGATATGGTAAAATCCT
TCGTGGACACCACATACTAGCTAATAAATCTAAAAGATTTCTAGAAGTGA
ATTTTAAAGCGACTGGACACGAGTTTGATCGGTTGTCAAACAACCCAAAC
GATCTTGGTAAAATACCGTAATATTGTGTGATCTGAGGTGTGATCGCTAA
CAATCCATCATACCTACCATAAAAGCCGGTCTCCACCTGCGCGCGCTGCG
CTTGCATCTTTTGTCTTCAATCCTtattgcttggaaaaaagattatgtca
taaaaatgtagcgcgcgctcgaaaaaatttgaacacatttcaactctttt
caaccgttacgtcagattgcGCCAATGGAATCCTTCACTTTTCTTCTGAC
CAATAGCGTGGGGGCTTTGCTCAAACAAGTAATATCGTAACGcgtgcaag
tggagaccggccttaaattACTTGGCTCAGACAAGTCTCTTCATCAACAA
NATCGCaacgcgcgcaagtggagaccggccttaaattACTTGGCTCAGAC
AAGTCTCTTCATCAACAACGATCCTCTCAGAGCTTTTCTCGAACCTTTGA
CAGTATAACCTcaataatatttcaaataataatattatttttgtattttt
atattttgtacatatgATTAAATTGAATGATCCTAAAGATAATATATGAT
TTGATAACAATTTAGAATCGTTTCTgttcaatttttagtttgaat

Coding sequence (CDS) from alignment at sc0000167:388291..396985+

>TCONS_00013395 ID=TCONS_00013395|Name=TCONS_00013395|organism=Clytia hemisphaerica|type=CDS|length=3735bp|location=Sequence derived from alignment at sc0000167:388291..396985+ (Clytia hemisphaerica)
ATGACAACCCAAATTATCCCTGGAGCTCTGAGGGAGACGAATAATCCGTT
ACTTCTTAAGGCTGGCATAGGTAAACCTCAACCTCGCGGTTATTCCATAC
CTCCTGATAGTTTTGCTTATGGAAAGACGAACTGTGGTAAAAGTTATGGT
GCCGGAGATACATTCATTTGGCAGACCAAAATCAGGCCATTGAAATCTAG
TGAAAAATCTGGAGAAAGAAGAGATTTTATCACGTTGAATAAAGCAGCCA
CACAAGCCGGACTGGTCACCGCTCAAGAGCATTTCCAATACCGAGCAACA
CATTCTAATGGTAATAAGCGCGGAGATAGTCGCCAAAAAACTGGTGGTTT
AGATTCAACCAAATTACCATTACTCTCTGATAGGGTGTTCGGCCTTCCAA
CAAAACATGGGCCGgcttatgactttcttgaacatAAATATCAAGACGAC
TGGCTGTGTGAAAATCACCGTAATCAGTtgtctgaaaaaagaaaagaacg
agAGTTAAAGAAATGTGCCAGCCGAACTTACTCCGAAACATGTGCATCAA
GATTGAGAAGATATTCCCCCAAAGTTGATGAACGTCCACTCTGGCAAATG
CCAAGATTCAAAAATCACGCTAAACCCAAACTTCAAACATTTCGAAGTGA
AGAAGCACGCACGAAAGCCTTTGAACATCACATTAGTGATTCTACATCTC
GCACTGGTGTCATAGGACATGGTATCTATGAAGATGCAAAAAGCTAGATG
ACAACCCAAATTATCCCTGGAGCTCTGAGGGAGACGAATAATCCGTTACT
TCTTAAGGCTGGCATAGGTAAACCTCAACCTCGCGGTTATTCCATACCTC
CTGATAGTTTTGCTTATGGAAAGACGAACTGTGGTAAAAGTTATGGTGCC
GGAGATACATTCATTTGGCAGACCAAAATCAGGCCATTGAAATCTAGTGA
AAAATCTGGAGAAAGAAGAGATTTTATCACGTTGAATAAAGCAGCCACAC
AAGCCGGACTGGTCACCGCTCAAGAGCATTTCCAATACCGAGCAACACAT
TCTAATGGTAATAAGCGCGGAGATAGTCGCCAAAAAACTGGTGGTTTAGA
TTCAACCAAATTACCATTACTCTCTGATAGGGTGTTCGGCCTTCCAACAA
AACATGGGCCGgcttatgactttcttgaacatAAATATCAAGACGACTGG
CTGTGTGAAAATCACCGTAATCAGTtgtctgaaaaaagaaaagaacgagA
GTTAAAGAAATGTGCCAGCCGAACTTACTCCGAAACATGTGCATCAAGAT
TGAGAAGATATTCCCCCAAAGTTGATGAACGTCCACTCTGGCAAATGCCA
AGATTCAAAAATCACGCTAAACCCAAACTTCAAACATTTCGAAGTGAAGA
AGCACGCACGAAAGCCTTTGAACATCACATTAGTGATTCTACATCTCGCA
CTGGTGTCATAGGACATGGTATCTATGAAGATGCAAAAAGCTAGATGACA
ACCCAAATTATCCCTGGAGCTCTGAGGGAGACGAATAATCCGTTACTTCT
TAAGGCTGGCATAGGTAAACCTCAACCTCGCGGTTATTCCATACCTCCTG
ATAGTTTTGCTTATGGAAAGACGAACTGTGGTAAAAGTTATGGTGCCGGA
GATACATTCATTTGGCAGACCAAAATCAGGCCATTGAAATCTAGTGAAAA
ATCTGGAGAAAGAAGAGATTTTATCACGTTGAATAAAGCAGCCACACAAG
CCGGACTGGTCACCGCTCAAGAGCATTTCCAATACCGAGCAACACATTCT
AATGGTAATAAGCGCGGAGATAGTCGCCAAAAAACTGGTGGTTTAGATTC
AACCAAATTACCATTACTCTCTGATAGGGTGTTCGGCCTTCCAACAAAAC
ATGGGCCGgcttatgactttcttgaacatAAATATCAAGACGACTGGCTG
TGTGAAAATCACCGTAATCAGTtgtctgaaaaaagaaaagaacgagAGTT
AAAGAAATGTGCCAGCCGAACTTACTCCGAAACATGTGCATCAAGATTGA
GAAGATATTCCCCCAAAGTTGATGAACGTCCACTCTGGCAAATGCCAAGA
TTCAAAAATCACGCTAAACCCAAACTTCAAACATTTCGAAGTGAAGAAGC
ACGCACGAAAGCCTTTGAACATCACATTAGTGATTCTACATCTCGCACTG
GTGTCATAGGACATGGTATCTATGAAGATGCAAAAAGCTAGATGACAACC
CAAATTATCCCTGGAGCTCTGAGGGAGACGAATAATCCGTTACTTCTTAA
GGCTGGCATAGGTAAACCTCAACCTCGCGGTTATTCCATACCTCCTGATA
GTTTTGCTTATGGAAAGACGAACTGTGGTAAAAGTTATGGTGCCGGAGAT
ACATTCATTTGGCAGACCAAAATCAGGCCATTGAAATCTAGTGAAAAATC
TGGAGAAAGAAGAGATTTTATCACGTTGAATAAAGCAGCCACACAAGCCG
GACTGGTCACCGCTCAAGAGCATTTCCAATACCGAGCAACACATTCTAAT
GGTAATAAGCGCGGAGATAGTCGCCAAAAAACTGGTGGTTTAGATTCAAC
CAAATTACCATTACTCTCTGATAGGGTGTTCGGCCTTCCAACAAAACATG
GGCCGgcttatgactttcttgaacatAAATATCAAGACGACTGGCTGTGT
GAAAATCACCGTAATCAGTtgtctgaaaaaagaaaagaacgagAGTTAAA
GAAATGTGCCAGCCGAACTTACTCCGAAACATGTGCATCAAGATTGAGAA
GATATTCCCCCAAAGTTGATGAACGTCCACTCTGGCAAATGCCAAGATTC
AAAAATCACGCTAAACCCAAACTTCAAACATTTCGAAGTGAAGAAGCACG
CACGAAAGCCTTTGAACATCACATTAGTGATTCTACATCTCGCACTGGTG
TCATAGGACATGGTATCTATGAAGATGCAAAAAGCTAGATGACAACCCAA
ATTATCCCTGGAGCTCTGAGGGAGACGAATAATCCGTTACTTCTTAAGGC
TGGCATAGGTAAACCTCAACCTCGCGGTTATTCCATACCTCCTGATAGTT
TTGCTTATGGAAAGACGAACTGTGGTAAAAGTTATGGTGCCGGAGATACA
TTCATTTGGCAGACCAAAATCAGGCCATTGAAATCTAGTGAAAAATCTGG
AGAAAGAAGAGATTTTATCACGTTGAATAAAGCAGCCACACAAGCCGGAC
TGGTCACCGCTCAAGAGCATTTCCAATACCGAGCAACACATTCTAATGGT
AATAAGCGCGGAGATAGTCGCCAAAAAACTGGTGGTTTAGATTCAACCAA
ATTACCATTACTCTCTGATAGGGTGTTCGGCCTTCCAACAAAACATGGGC
CGgcttatgactttcttgaacatAAATATCAAGACGACTGGCTGTGTGAA
AATCACCGTAATCAGTtgtctgaaaaaagaaaagaacgagAGTTAAAGAA
ATGTGCCAGCCGAACTTACTCCGAAACATGTGCATCAAGATTGAGAAGAT
ATTCCCCCAAAGTTGATGAACGTCCACTCTGGCAAATGCCAAGATTCAAA
AATCACGCTAAACCCAAACTTCAAACATTTCGAAGTGAAGAAGCACGCAC
GAAAGCCTTTGAACATCACATTAGTGATTCTACATCTCGCACTGGTGTCA
TAGGACATGGTATCTATGAAGATGCAAAAAGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007484XLOC_007484Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013395-exon-sc0000167-1491911889:388291..388798TCONS_00013395-exon-sc0000167-1491911889:388291..388798Clytia hemisphaericaexon
TCONS_00013395-exon-sc0000167-1510915933:388291..388798TCONS_00013395-exon-sc0000167-1510915933:388291..388798Clytia hemisphaericaexon
TCONS_00013395-exon-sc0000167-1575043694:388291..388798TCONS_00013395-exon-sc0000167-1575043694:388291..388798Clytia hemisphaericaexon
TCONS_00013395-exon-sc0000167-1491911889:392642..392787TCONS_00013395-exon-sc0000167-1491911889:392642..392787Clytia hemisphaericaexon
TCONS_00013395-exon-sc0000167-1510915933:392642..392787TCONS_00013395-exon-sc0000167-1510915933:392642..392787Clytia hemisphaericaexon
TCONS_00013395-exon-sc0000167-1575043694:392642..392787TCONS_00013395-exon-sc0000167-1575043694:392642..392787Clytia hemisphaericaexon
TCONS_00013395-exon-sc0000167-1491911889:393135..393234TCONS_00013395-exon-sc0000167-1491911889:393135..393234Clytia hemisphaericaexon
TCONS_00013395-exon-sc0000167-1510915933:393135..393234TCONS_00013395-exon-sc0000167-1510915933:393135..393234Clytia hemisphaericaexon
TCONS_00013395-exon-sc0000167-1575043694:393135..393234TCONS_00013395-exon-sc0000167-1575043694:393135..393234Clytia hemisphaericaexon
TCONS_00013395-exon-sc0000167-1491911889:393472..393715TCONS_00013395-exon-sc0000167-1491911889:393472..393715Clytia hemisphaericaexon
TCONS_00013395-exon-sc0000167-1510915933:393472..393715TCONS_00013395-exon-sc0000167-1510915933:393472..393715Clytia hemisphaericaexon
TCONS_00013395-exon-sc0000167-1575043694:393472..393715TCONS_00013395-exon-sc0000167-1575043694:393472..393715Clytia hemisphaericaexon
TCONS_00013395-exon-sc0000167-1491911889:394106..394319TCONS_00013395-exon-sc0000167-1491911889:394106..394319Clytia hemisphaericaexon
TCONS_00013395-exon-sc0000167-1510915933:394106..394319TCONS_00013395-exon-sc0000167-1510915933:394106..394319Clytia hemisphaericaexon
TCONS_00013395-exon-sc0000167-1575043694:394106..394319TCONS_00013395-exon-sc0000167-1575043694:394106..394319Clytia hemisphaericaexon
TCONS_00013395-exon-sc0000167-1491911889:395808..396985TCONS_00013395-exon-sc0000167-1491911889:395808..396985Clytia hemisphaericaexon
TCONS_00013395-exon-sc0000167-1510915933:395808..396985TCONS_00013395-exon-sc0000167-1510915933:395808..396985Clytia hemisphaericaexon
TCONS_00013395-exon-sc0000167-1575043694:395808..396985TCONS_00013395-exon-sc0000167-1575043694:395808..396985Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013395-proteinTCONS_00013395-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:388291..396985 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.0809	18.4482	11.6954	11.5323	97.4862	73.7414	36.494	38.4334	19.6705	26.895	17.601	16.1095	4.43558	3.53906	5.6252	5.55099	5.20205	6.19555	5.3432	6.56838	6.82578	7.96288	11.7129	11.9035	123.04	70.9675	14.8105	13.8542	13.7758	14.0722
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029147DUF4483
Blast
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BLAST of TCONS_00013395 vs. Swiss-Prot (Human)
Match: CFA77 (Cilia- and flagella-associated protein 77 OS=Homo sapiens GN=CFAP77 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.824e-19
Identity = 71/227 (31.28%), Postives = 110/227 (48.46%), Query Frame = 1 
Query:  652 KAGIGKPQPRGYSIPPDSFAYGKTNCGKSYGAGDTF-IWQT-KIRPLKSSEKSGERRDFITLNKAATQAGLVTAQEHFQYRATHSNGNKRGDSRQKTGGLDSTKLPLLSDRVFGLPTKHG-PAYDFLEHKYQDDWLCENHRNQLSXXXXXXXXXXCASRTYSETCASRLRRYSPKVDERPLWQMPRFKNHAKPKLQTFRSEEARTKAFEHHISDSTSRTGVIGHGIY 1323
            +A +GKP+ R YS+P  +F YG    G   G  +    W   K +P    E +   R++I +N+ A +AGLVTA+E+  YR  +       D R+    +     PL  +  FG+  +   P +D L+H+Y   W+ E    Q    + E++ K    + Y ET +S+LR+Y P V    LW MP F+   +  L TF +E  R +A + H  +   R G +  G Y
Sbjct:  101 QAELGKPRERSYSLPGINFNYGLYIRGLDGGVPEAIGRWNVFKQQPTCPHELT---RNYIAMNRGAVKAGLVTARENLLYRQLNDIRISDQDDRR----MKKEPPPLPPNMTFGIRARPSTPFFDLLQHRYLQLWVQEQKATQ-KAIKLEKKQKVVLGKLY-ETRSSQLRKYKPPVKLDTLWHMPHFQKVGR-HLDTFPTEADRQRALKAHREECAVRQGTLRMGNY 317
The following BLAST results are available for this feature:
BLAST of TCONS_00013395 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CFA772.824e-1931.28Cilia- and flagella-associated protein 77 OS=Homo ... [more]
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