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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013397 ID=TCONS_00013397|Name=TCONS_00013397|organism=Clytia hemisphaerica|type=transcript|length=1873bp
tagcaaaaaaaaaatgagacagaaaataaattcaatatTACTGACATGTC
TATTGGTGTTATGCTTAATACAAACCGTTCATGGAATTGTTGAAGGTATC
TACTGTGGCAAAGAAAACTGTTATGATGTGCTAGGAGTTAACAGGGAGAC
GACTACCAAGAAAGAAATCTCAAGGGCGTACCGTAAATTAGCCCGGAAGT
TCCATCCGGATACTTCTAAAGAAGAAGATGCGGCTGTGAAGTTTCGTAAA
GTTGCAACGGCTTATGAAATATTGAAGGAAGATGATTCAAGGAAAGATTA
TGACTACATGTTGGACAACCCTGAAGAAGCCTACTACCATTACTACCAAT
ACTACCGTCGCCGATTGACACCAAAGGTCGATGTCCGTTATGTTCTCTTC
GTTACCATCACCATTATCTCCATAATCCAATATCTCCATAAGGCAAACCG
ATACGAAGATGCCATCTCTTATGCTATGCAGAATCCGAAATTCCGGAACC
AAGCCATGCAGATTATTCATCAAGAGGGGCTTTTGGAGCACaacaaaaaa
tcttcaaagaacAAGAAGAGCAAGGAGGACcggaagaaagaagaagaacg
tGTTTTAAGAGAAGTCGTTGAAGATTCCATTGATATCCGTGGTGGCTATA
GTAAACCAACTTATAGAGACATCTTATGGGTTCAACTGTCATGTCTACCT
TACCAAACGTTTAATTACGTGAAATGGTACGCCTGTTGGGTTCTCAAGTT
CAACATACGCAAAGAAGAATACGGGGAGGAAGAAAAAGAATACCTTACGT
ACAGTGGCCTCAATATGACGGAACAATACTGGGCCGCCCTTGATGAATAC
ACACGAGAAGACATCATGCACAAGGAATTATGGGTACCTGAGAAATTGAA
AGCTTATAAAGAGGCTCAAGAAGAAGAAATGCGGGTTAAGATGGCGGAAA
GCGGCCGCCATAAAATGTGGCGCCGCTATATGAAAAAAGGTGGACCAGGG
CAAATGACTTTCGCAGAGGATTAAGATATTAGTGATGCACTATCTTTACC
CCTCTAAAAGCCAGGAGTTATTATTACCAACGCTAGTAGACAAATTCTTG
TTCACCATGGTATATTgatatttgaattttgaagtaACTTTTATCAAAGA
TACATTGATGCATTGATACATTGAAATCGAGCTTCTTTCCGACATTAATA
TCTGGAAGAAACCAAACTTATGAAATGTTggcatacacgcttttttttta
ataagaatagtgtactttggttgagggtaagcattattcttatttttcta
ttgttctaaacaataggcctattgttttaaacccgaaatctcaccctgat
attcttatagaagttattcttataaaagaaaaagcgtgtagttcTGTAGT
TGTCTTTAATATTTTTACCCTAACATTACTAGAATCTTTTTTCCCAAGAC
TTTTGCAGCTATTTGCAATGTTTTGgtaatttattttcctttttttatca
tttttaggatatttatgaaaaattataataaacTAATATTTTGATATCTA
GGGGGTattgattgaaaattttattgataaGTCCTTAGCTTGAACAAAAT
AATGTGCTAAAGTGTTTTTGTTACAGAAATCAATTTTGAATGCGTGTGGC
TTTCTACGTTTTGAAAATCCTCATTTTCAATAACAAATATTGCTTTTTTG
CAAaatagtttttcaaattttctgcaCGAAATTGTTATTGGTAAACGAGG
ATATATTATTCTATCGTCATACCCACTGAGATATTATTTATAGGAcgctt
tttttttgtttgaaaaatatgcaatttaaaaattaaacactCGTTATttt
gaagaaggaaaaaaagaaatatg Run BLAST on NCBI transcript from alignment at sc0000167:413410..416246+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013397 ID=TCONS_00013397|Name=TCONS_00013397|organism=Clytia hemisphaerica|type=transcript|length=2837bp|location=Sequence derived from alignment at sc0000167:413410..416246+ (Clytia hemisphaerica)
tagcaaaaaaaaaatgagacagaaaataaattcaatatTACTGACATGTC
TATTGGTGTTATGCTTAATACAAACCGTTCATGGAATTGTTGAAGGTATC
TACTGTGGCAAAGAAAACTGTTATGATGTGCTAGGAGTTAACAGGGAGAC
GACTACCAAGAAAGAAATCTCAAGGGCGTACCGTAAATTAGCCCGGAAGT
TCCATCCGGATACTTCTAAAGAAGAAGATGCGGCTGTGAAGTTTCGTAAA
GTTGCAACGGCTTATGAAATATTGAAGGAAGATGATTCAAGGAAAGATTA
TGACTACATGTTGGACAACCCTGAAGAAGCCTACTACCATTACTACCAAT
ACTACCGTCGCCGATTGACACCAAAGGTCGATGTCCGTTATGTTCTCTTC
GTTACCATCACCATTATCTCCATAATCCAATATCTCCATAAGGCAAACCG
ATACGAAGATGCCATCTCTTATGCTATGCAGAATCCGAAATTCCGGAACC
AAGCCATGCAGATTATTCATCAAGAGGGGCTTTTGGAGCACaacaaaaaa
tcttcaaagaacAAGAAGAGCAAGGAGGACcggaagaaagaagaagaacg
tGTTTTAAGAGAAGTCGTTGAAGATTCCATTGATATCCGTGGTGGCTATA
GTAAACCAACTTATAGAGACATCTTATGGGTAAGCTTGTTTTTACGTCCT
ATGCCATAGTTTtcgaattgtttattcttaagAATTTTCATTGACactat
ttatttcaaaatttagctCAAGGATATTTGGTATGCAGTCTTCTTTCTAA
GCTCTATACCTTTCGTACCTTGCTTGATCTCATACTCGGTTATTCCACGA
GGTATCATAGAACAACTGCAACCTCCTTGAGTCTTAAATGTCCTTTTAAA
TTGCAAACTTACACTTTTTTTCGCCTACTAACGTTTAGTAGGCAAATTCC
ACTTCCCCATCCAACGATGTTACTTTGTAGCTCATCAAAATGTTATTAAA
GTGAATTAGTAGCAAACTTCTGTAGCTCACTGAGGTTGATATTGAAATTA
ACGAGTCGTTGTCATATTGCCTTGATCATTCCGTTATGAAGAGGTTTCCA
Acacaatacacaggttgcaaaattaaaaaagtctgaagacaaatcacgct
tttactcgaaattttcatGTGCTTGTtatacatgacatttatttctgatt
ggttcgaatttattgacactaataaagttatcagctgtaagttgtaaagc
aagcgacatgggaataaaatcacgtgaactttttcgagtaatcgcatgtt
ttgactgcactgatataattttgcaacccgtgtatttgTCATTCTTCCAA
TAGGTTCAACTGTCATGTCTACCTTACCAAACGTTTAATTACGTGAAATG
GTACGCCTGTTGGGTTCTCAAGTTCAACATACGCAAAGAAGAATACGGGG
AGGAAGAAAAAGAATACCTTACGTACAGTGGCCTCAATATGACGGAACAA
TACTGGGCCGCCCTTGATGAATACACACGAGAAGACATCATGCACAAGGA
ATTATGGGTACCTGAGAAATTGAAAGCTTATAAAGAGGCTCAAGAAGAAG
AAATGCGGGTTAAGATGGCGGAAAGCGGCCGCCATAAAATGTGGCGCCGC
TATATGAAAAAAGGTGGACCAGGGCAAATGACTTTCGCAGAGGATTAAGA
TATTAGTGATGTAagcaaatttttaattatttaatttttattgctttttt
aaGAACCATTTAAAAAATAGAGTTTTCAAGATTTATTAGCAATAGGTATT
TCACTTACAGTCgtctctctcttattcgatcgAAAGTGAccaaaatgttc
tttaaattaGGGAAggtttcgaattacagagagtagtTTATTCTACTTTT
CATGTgagaggaccaatattttagttcgaattattgaaagattcgaatag
cAGAGGTTCGAATTGGAAAGAGTTTTTTAAGTAATTTAAGTAATATTTAG
GCACTATCTTTACCCCTCTAAAAGCCAGGAGTTATTATTACCAACGCTAG
TAGACAAATTCTTGTTCACCATGGTATATTgatatttgaattttgaagta
ACTTTTATCAAAGATACATTGATGCATTGATACATTGAAATCGAGCTTCT
TTCCGACATTAATATCTGGAAGAAACCAAACTTATGAAATGTTggcatac
acgctttttttttaataagaatagtgtactttggttgagggtaagcatta
ttcttatttttctattgttctaaacaataggcctattgttttaaacccga
aatctcaccctgatattcttatagaagttattcttataaaagaaaaagcg
tgtagttcTGTAGTTGTCTTTAATATTTTTACCCTAACATTACTAGAATC
TTTTTTCCCAAGACTTTTGCAGCTATTTGCAATGTTTTGgtaatttattt
tcctttttttatcatttttaggatatttatgaaaaattataataaacTAA
TATTTTGATATCTAGGGGGTattgattgaaaattttattgataaGTCCTT
AGCTTGAACAAAATAATGTGCTAAAGTGTTTTTGTTACAGAAATCAATTT
TGAATGCGTGTGGCTTTCTACGTTTTGAAAATCCTCATTTTCAATAACAA
ATATTGCTTTTTTGCAAaatagtttttcaaattttctgcaCGAAATTGTT
ATTGGTAAACGAGGATATATTATTCTATCGTCATACCCACTGAGATATTA
TTTATAGGAcgctttttttttgtttgaaaaatatgcaatttaaaaattaa
acactCGTTATtttgaagaaggaaaaaaagaaatatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013397-exon-sc0000167-1491911889:413410..414088 | TCONS_00013397-exon-sc0000167-1491911889:413410..414088 | Clytia hemisphaerica | exon |
| TCONS_00013397-exon-sc0000167-1510915933:413410..414088 | TCONS_00013397-exon-sc0000167-1510915933:413410..414088 | Clytia hemisphaerica | exon |
| TCONS_00013397-exon-sc0000167-1575043694:413410..414088 | TCONS_00013397-exon-sc0000167-1575043694:413410..414088 | Clytia hemisphaerica | exon |
| TCONS_00013397-exon-sc0000167-1491911889:414763..415119 | TCONS_00013397-exon-sc0000167-1491911889:414763..415119 | Clytia hemisphaerica | exon |
| TCONS_00013397-exon-sc0000167-1510915933:414763..415119 | TCONS_00013397-exon-sc0000167-1510915933:414763..415119 | Clytia hemisphaerica | exon |
| TCONS_00013397-exon-sc0000167-1575043694:414763..415119 | TCONS_00013397-exon-sc0000167-1575043694:414763..415119 | Clytia hemisphaerica | exon |
| TCONS_00013397-exon-sc0000167-1491911889:415410..416246 | TCONS_00013397-exon-sc0000167-1491911889:415410..416246 | Clytia hemisphaerica | exon |
| TCONS_00013397-exon-sc0000167-1510915933:415410..416246 | TCONS_00013397-exon-sc0000167-1510915933:415410..416246 | Clytia hemisphaerica | exon |
| TCONS_00013397-exon-sc0000167-1575043694:415410..416246 | TCONS_00013397-exon-sc0000167-1575043694:415410..416246 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000167 | supercontig | sc0000167:413410..416246 + |
Blast
BLAST of TCONS_00013397 vs. Swiss-Prot (Human)
Match: DJC25 (DnaJ homolog subfamily C member 25 OS=Homo sapiens GN=DNAJC25 PE=1 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 4.744e-63 Identity = 148/324 (45.68%), Postives = 216/324 (66.67%), Query Frame = 2
Query: 83 GIVEGIYCGKENCYDVLGVNRETTTKKEISRAYRKLARKFHPDTSKEE-----------DAAVKFRKVATAYEILKEDDSRKDYDYMLDNPEEAXXXXXXXXXXXLTPKVDVRYVLFVTITIISIIQYLHKANRYEDAISYAMQNPKFRNQAMQIIHQEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIDIRGGYSKPTYRDILWVQLSCLPYQTFNYVKWYACWVLKFNIRXXXXXXXXXXXLTYSGLNMTEQYWAALDEYTREDIMHKELWVPEKLKAYKEAQEEEMRVKMAESGRHKMWRRYMKKGGPGQMTFAED 1021
+VEG+YCG +CY+VLGV+R + K EI+RAYR+LAR++HPD + + A F VATAYE LK++++RKDYDYMLD+PEE Y HYY YY RRL PKVDVR V+ V++ IS+ Q+ N Y AISY PK+R QA +I Q+GLL+ K+ KNKKSKE+ + EEE +++ +++ IDI+GGY KP D+L Q+ P+ +Y+ WY W+ FNI+ +EYGEEE+ Y+ + M++ + +L+++ +E + +ELW+ E + YK+ QEEE++ K+A R K +RR+MK GPG++TF +D
Sbjct: 38 ALVEGLYCGTRDCYEVLGVSR-SAGKAEIARAYRQLARRYHPDRYRPQPGDEGPGRTPQSAEEAFLLVATAYETLKDEETRKDYDYMLDHPEEYYSHYYHYYSRRLAPKVDVRVVILVSVCAISVFQFFSWWNSYNKAISYLATVPKYRIQATEIAKQQGLLKKAKEKGKNKKSKEEIRDEEENIIKNIIKSKIDIKGGYQKPQICDLLLFQIILAPFHLCSYIVWYCRWIYNFNIKGKEYGEEERLYIIRKSMKMSKSQFDSLEDHQKETFLKRELWIKENYEVYKQEQEEELKKKLANDPRWKRYRRWMKNEGPGRLTFVDD 360
The following BLAST results are available for this feature:
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