TCONS_00013399 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013399
Unique NameTCONS_00013399
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4773

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013399 ID=TCONS_00013399|Name=TCONS_00013399|organism=Clytia hemisphaerica|type=transcript|length=4773bp
AATCGATTAACGTCTCCGctgtgaagaagaagaagaatcatACTTTTCCT
TTTTGGAGGGACCGAATACTTCTTATTTCTTGGATTGTGTTTGAAAAGGT
TTTCTATCGTCATGAGGATTTTACTATACtttctttatatattttatttc
acTGGAATTTCTAGACTTAGAAAACAAGTTTGTGATGTTTGACTGTCACT
TAGGATTTTAAAGAACACAGactttataaagaaaaatttagttATGAACT
GGATTTATTTCACCAAAATGGATATCAATGTCTGTCTTACTGTTATGACT
TCATGGCATCTGGCATATGGTCAAAGACTTCTGGTGTTTTACGAAAATGT
TATCTTTGATTACGATGGTCCAACTTTTAATGGTGACATTCGAAATGATT
ATCGATTTTCGTCCAAAAATAAGACTTCTTTTATTCGATATCACGACGAT
ACGTTAGAACATTGTCAAGACATTTGGCGAAATTTATCATTCAACTCTTT
ACAAAAAGATTATGACGGTATAATTTCTTTAACAAAGTCACAAAACCTTT
TGAGCAAACAACTTTCATCTTCAAATGAAGTATTGGATATATTATATCAA
TTTGAATCAACATTTAGTAGATTGAAATGGATGTTATCAAACGATCGACA
ATACTATTCTTGTGTTTGGCTATCTCCTTTGTTTATCAGCACAGTATCCG
CAATATTCAACATTTTACGGACCAAAAACCTGGCTGTACTCATCGAAGAT
AACTACTGTTCGAATTTTTTAATGAGGGATATTCAAACATCTTTACTGAT
GCTAAATGGTAATAAAACAAAGACTATTTTCAATCCTATTTATGTTGGTT
TGGCGCCTCATCAAGAAGCGCGCAATCGTGATCAATTCTATGATCTCTTG
GTGGAGGGACAAACAGATTTCCTCATGCTTTTGCAACGTGACCTACACAA
ACACGTGTTCAAAATGGCggcatttttcagtttgttGGGACCACATCAAC
GTTGGTtgataccaaattttgatcaaaatgaacCTTTAGGGTTTGGTAAT
GTATTACCAGGACAGATATTATCTTTCCAGTTGAAGACAAATGACAATTT
TGGTGTGACGAAGTTGTCCGATGTTGTTGGATGGATATCTGAAACCTTCC
AACATTTTCGAAATGACCAATCACTGATCCACAAAAGTTCCATTCTGTAC
TCAACACTGATGAGAAGGATGTACCATTCCAATATCCAATATCGACAATC
acctttagaaatattttactaCAATGGTGAAAATCAAGGCGAATGGCAAT
CCAACCAAGGATTTATGCGTGATAACAAGTTGACCTTTTATGGCGATGTA
TTGAATATTCTACGGTCATCTGAAACAAATAGTCTTACAGATCGCATACG
TATAGTCACAATAAACGATGCTCCGTATACTTTCGTTGATGGCAAATTTT
ACGACGCCGATAATGATATGTGTTCCGACGGTTTCTTATGTCAAATTCCG
ATACAAACGGATAGTTCCAGGCAACTTAATTACCAAAAGTCTTGTTGTAT
CGGTTTCATACCGGATATTTTCCGCATGGTCATAAAGAACGTTGCTATAC
CGTTCGAAATGTACGTTGTTGCGGACGGGAAGTATGGCGGATTCAAGAAC
GGTACGTGGAATGGAATGATCGCGGATGTTGCTTACGGGAAAGCGGACAT
GGCGATGGCTGCCATCACCATCACGAAAGAACGGTCAGATTCTGTATCTT
TTAGCGCCCCATTCATGTTCGACCAAACGGGAATCATAACAAAACCAGCA
GTGGTTGAACTGGATTTTTTGAATTGGGAGTTTTTGGCGCCTCTTTCCAA
AGAGCTTCAAATTTATCTAGTGATTTTGGTTGTGGTTTGTATGCTGTTGC
TttacttctttgaaaatacaataTACTTTTACATTTATCACCACCATGGG
TTCAGTCATAAAGCGTATTACTCATTCCTCGAAGGACTTTCTCACATCTC
TGGTGTAACTTTACAAAGAGATCTTGGCGGGAAACATCCTTTACGCCCAG
CCGCCCGTATCATGTGTTTGTTTTTTGCTATTGGGATGGTAATAATTGTT
TCGACTTACACAGCCGTTTTGGCAGCACAAAGTTTGAAGAGTAAAGAGAG
AGAGCCTCTACAAGGAGGATCACAAGATGTTAGATTCCGGAATCCAACCA
ACGAATTCCGATTCGGTATATTACGTGATAGCTCATACGAATCTTTCTTC
AAAAACGGGGAAACGGATTTACTAAAACGGATGAGTGTGTTCATGGAACC
GTACAATTATGACACCCTTGCTGAGGGTATGGATATGGTGCGAAATGGTA
CTTTGCAAGCTTCATTCAGTGATTTCGCTTTCCTGCATTTCTATTTATCA
AAAGATCGTTCATGTCAACTCAAATTGGTCAAAGATAAACTCTACTTCTT
TGGCCTTGGGTTCCCAATGGCGAAAGATTTTCCTTATCGAGAGCTGATTA
ATCAAGgcattttgaaatttaccaGTAAAGACATGATAGCAGAGTTACAG
GCCAAATGGTTCGATAATATTTGCCAACCGAATTTTTTTGTGACAAGCAA
TACGCAACTTTCGATTAAATTTTTTGGTGGTTTGGTATTCATACTAGCGA
TGACGATTATTGGAGCTTTGTTGTTTCTGTACCCAGAACATTTGTGGTGG
AAATATTTTCATGAGAAAGTCTTGAAACtgatgaaaaggaagattttaaa
aAGTGAATTGAAAAGTCCGGTGACGTAAAAATTGTCGTGGAAGATTTTAA
Actggaaatttaatttctgaaagacaatagaccttttcataaattacgaa
catcacttgcctcgcattcaaacaattaccatggtgattatgtctcttga
tACATTATGATGTTTTAATGAataaaaagtagttttaataaaatccgctg
ggagttaatcgccatggcaataatttcaaaacgaggcaagtgatgttcgt
aaagTAATTTTCGAAAATGTCTATTACCGGCATCGGAAAGAAGGATATGG
AAAAGTTCTAATGGGTCCAATACCATAACAGAGATGATTGaaactaatga
tgaaaaaaatattttattcttcAAGAAGAAGCCCGGTACCATGTGCGTAT
GTGGAGACAAAAATTAGGGTGTCAAAATTGCGTACCCTAGCAGTGCAAAG
AAAATTCTgtcaaatttgagtaaatttggatGGACAATCGACCTCCCGGT
GCAATTCCTTGAATATTTTTGTACAAATAGAATTGGTCAGATGTCAAAAA
ATCCCCGCGCGTGTTCGATTTCGAGTTACCAAGACTCTACTGTATCAAAA
CTTGTTGACTGGGTTATCGAGACTCTACTGTATCAAAACTTGTTGACTGG
GTTATCGAGACTCTACTGTATCAAAACTTGTTGACTGAGTTATCGAGACT
CTACTGTATCAAAACTTGTTGACTGGGTTATCGAGACTCTACTGTATCAA
AACTTGTTGACTGGGTTATCGAGACTCTACTGTATCAAAACTTGTTGACT
GAGTTATCGAGACTCTACTGTATCAAAACTTGTTGACTGGGTTATCGAGA
CTCTACTGTATCAAAACTTGTTGACTGGGTTATCGAGACTCTACTGTATC
AAAATTTGTTGACTGGGTGAATGATGTAGATTCGACATGAACACTGCTCT
CTATATCAACTAGATTATGAAGACATTTTAGCTGATGAGGGTTTTGGTGA
CAAAAATGAGTCAGCTCAGTTCTTTTTCTCGTGATGACCGATTAGAAAGT
GTATTTGTATTTCAGTTCACTACAAcgcaaaatactaagaacaggacgaa
aaatataaaaacagaaATGGTACAATAACATTGAAACAACAAAAACTACA
TAACCTTCGATCCATTAAAAGTACTCATTTTTTACAAGCAAAATTATCAT
AAGGCTTAAGGCTCAGGCCTTAAAATCTATACGAGTCTTTAAGTCCCTTA
GCCTCCAGAGCTATATGTATAAAAATGGTCAATTTTGATAAGACCTTGGC
ACTCATCCGTTGGATCgaaagttgttttttgaaataaagctTTGAAGGAC
AAAAAAACGTTCAATAAATAATCTtaatcttatataaaaaataattcaaa
ttctaaAGAATATTCCAGTATCATAAAATTAACTCCCTAACATAATacac
gtttctttataagaacatccaacatttttgaagcctttggacgttcttaa
ctttttgagttttaagcctaaaaatgttctcaacatgttcttattttcac
cattttttgagcattttttgactatttttctaAGAGATCAGCTATTTTAA
TGTCGGCAAAGCctcagaatgttcttaacttgttcttaacatttcggcca
tcgaatatgttcttatattgtttgttcttataaagaaaaacgtaTAGTTA
CATAGCTTCCTAAATATTTAGTATTTAGCTTTTAAGGTATACCTAGACAC
CTAGTTACTCTCTCAACTACCCAAATAAATAGGAAATGGAAAAATCGTTA
TTCCAAATACCACAAAAGGAAATATATAGACTtttcagaaaatattttca
aaaagattgaACGGGAGATTTTTATTGGGCAAAATGTGCACTTTAGACAA
ATGTCAGCATCTTCCAATATAGAATACGTATGAcgtaatgggctcttcca
aagAAAAATCCACCATAAGGGGAGGATGATATATTTTCCTGAGAAATTTG
ACAAAGGGTAAATTAAAgtgtcc
Run BLAST on NCBI

transcript from alignment at sc0000167:418518..426200+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013399 ID=TCONS_00013399|Name=TCONS_00013399|organism=Clytia hemisphaerica|type=transcript|length=7683bp|location=Sequence derived from alignment at sc0000167:418518..426200+ (Clytia hemisphaerica)
AATCGATTAACGTCTCCGctgtgaagaagaagaagaatcatACTTTTCCT
TTTTGGAGGGACCGAATACTTCTTATTTCTTGGATTGTGTTTGAAAAGGT
TTTCTATCGTCATGAGGATTTTACTATACtttctttatatattttatttc
acTGGAATTTCTAGACTTAGAAAACAAGTTTGTGATGTTTGACTGTCACT
TAGGATTTTAAAGAACACAGactttataaagaaaaatttagttATGAACT
GGATTTATTTCACCAAAATGGATATCAATGTCTGTCTTACTGTTATGACT
TCATGGCATCTGGCATATGGTCAAAGACTTCTGGTGTTTTACGAAAATGT
TATCTTTGATTACGATGGTCCAACTTTTAATGGTGACATTCGAAATGATT
ATCGATTTTCGTCCAAAAATAAGACTTCTTTTATTCGATATCACGACGAT
ACGTTAGAACATTGTCAAGACATTTGGCGAAATTTATCATTCAACTCTTT
ACAAAAAGATTATGACGGTATAATTTCTTTAACAAAGTCACAAAACCTTT
TGAGCAAACAACTTTCATCTTCAAATGAAGTATTGGATATATTATATCAA
TTTGAATCAACATTTAGTAGATTGgtaagaaaacttttttatggaaatcA
AATTTCATCGACGTTTTAGATCACCTACaccattttttattgaaaaactt
atGTTCTTCCCAAAAAGACTTTTCAGCCTTTCAGTACTACTTAATTTTAA
AGCANTATTGAAAAACTTATGTTCTTCCCAAAAAGACTTTTCAGCCTTTC
AGTACTACTTAATTTTAAAGCATCCACTGATCAGGTAGATTTCCCCCAAG
TGGAATTTtttcacacccctgtgtcacagacccactggaaagtttggcaa
agatttcgtccccggtgggaaaaaaccttgcaatttcagccccacttgga
GATTGACTTGATTTCGTCCCAATTCGAAATTCcaccccactggatttttt
aaccttagaacaatagaatgttaatcatcattggaatttcaataggaatt
tttatccccaaggaggaaaaagttccaccggggctgtgagacaggttTTT
TTCTCTCCGTTATCCTTGCTCTGCCTGCACTCtcgctttttattaatttc
ctttttaagactaaattttgacaatttttggtCGAGTTGTTTGCCTTCTT
CCTAAACCTTTATCTTTTTATTATCTCTGACATCAGCTGGTATTCTTGAC
TTTATCCTTCTAGAAATATGAAACTTTCGTAAAAAATAGTGTATTTGCTA
CCAAAAAGCATTCCCCCTGAGTTATACTCATTTTATGACCTCTACAGAAA
TGGATGTTATCAAACGATCGACAATACTATTCTTGTGTTTGGCTATCTCC
TTTGTTTATCAGCACAGTATCCGCAATATTCAACATTTTACGGACCAAAA
ACCTGGCTGTACTCATCGAAGATAACTACTGTTCGAATTTTTTAATGAGG
GATATTCAAACATCTTTACTGATGCTAAATGGTAATAAAACAAAGACTAT
TTTCAATCCTATTTATGTTGGTTTGGCGCCTCATCAAGAAGCGCGCAATC
GTGATCAATTCTATGATCTCTTGGTGGAGGGACAAACAGATTTCCTCATG
CTTTTGCAACGTGACCTACACAAACACGTGTTCAAAATGGCggcattttt
cagtttgttGGGACCACATCAACGTTGGTtgataccaaattttgatcaaa
atgaacCTTTAGGGTTTGGTAATGTATTACCAGGACAGATATTATCTTTC
CAGTTGAAGACAAATGACAATTTTGGTGTGACGAAGTTGGCCGATGTTGT
TGGATGGATATCTGAAACCTTCCAACATTTTCGGTATGAAGACCATATTT
TTGATTCCCTCTCTTTCTTTAGATGATCCTATCGTCTAGAAagacattgt
gacgtgccgtggcactcataaggttcgAATTTCCAgggttgtttttcatt
tttccaagggggttaaaagttattctaaaattttcagagGCAAAAGACTT
TTTTTACTTCGTCCACTCTCACGTCcattaaaagaatttttccaaggatg
tttttgcaaattttgccattttcagNTTTTTTaaccttagaacaatagaa
tgttaatcatcattggaatttcaataggaatttttatccccaaggaggaa
aaagttccaccggggctgcgagacaggttttttttctttccgttATCCTT
GCACTGCCTGCACTCtcgctttttattaatttcctttttaagactaaatt
ttgacaatttttggtCGAGTTGTTTGCCTTCTTCctaaatttttatcttt
ttattatCTCTGAATCTCTGACATCAGCTGGTATTTTTGACTTTATCGTT
ctagaaaaatgaaactttcgTGAAAAATAGTGTATTTGCTACCAAAAAGC
ATTCCCCCTGAGTTATACTCATTTTATGACCTCTACAGAAATGGATGTTA
TCAAACGATCGACAATACTATTCTTGTGTTTGGCTATCTCCTTTGTTTAT
CAGCACAGTATCCGCAATATTCAACATTTTACGGACCAAAAACCTGGCTG
TACTCATCGAAGATAACTACTGTTCGAATTTTTTAATGAGGGATATTCAA
ACATCTTTACTGATGCTAAATGGTAATAAAACAAAGACTATTTTCAATCC
TATTTATGTTGGTTTGGCGCCTCATCAAGAAGCGCGCAATCGTGATCAAT
TCTATGATCTCTTGGTGGAGGGACAAACAGATTTCCTCATGCTTTTGCAA
CGTGACCTACACAAACACGTGTTCAAAATGGCggcatttttcagtttgtt
GGGACCACATCAACGTTGGTtgataccaaattttgatcaaaatgaacCTT
TAGGGTTTGGTAATGTATTACCAGGACAGATATTATCTTTCCAGTTGAAG
ACAAATGACAATTTTGGTGTGACGAAGTTGTCCGATGTTGTTGGATGGAT
ATCTGAAACCTTCCAACATTTTCGGTATGAAGACCATATTTTTGATTCCC
TCTCTTTCTCTAGATGATCCTATCGTCTAGAAagacattgtgacgtgccg
tggcactcataaggttcgAATTTCCagggttgttttttcatttttccaag
ggggttaaaagttattctaaaattttcagagGCAAAAGACTTATTTTACT
TCGTCCACCCTCACGTCcattaaaagaatttttccaaggatGTTTtagca
aattttgccattttcaaggggtatcgacacattttcaataatttttttcc
accctcctgtatggttttttaatggagcAGCCCAATGACGGCCCCATTTT
GTAATTTGTTATTTATGCTAGAAATGACCAATCACTGATCCACAAAAGTT
CCATTCTGTACTCAACACTGATGAGAAGGATGTACCATTCCAATATCCAA
TATCGACAATCacctttagaaatattttactaCAATGGTGAAAATCAAGG
CGAATGGCAATCCAACCAAGGATTTATGCGTGATAACAAGTTGACCTTTT
ATGGCGATGTATTGAATATTCTACGGTCATCTGAAAGTAAGTGATAATTT
TACTTACTAGTCTCTATATTTACCTTTCATCGCCTTAAAGCACACACAAA
TGTTTCAACCAAAGTGAGTCATCTTAAAATTATTAAAGACAGTGTTGTAG
GGTTTTCTGGGAAATTCTATTTGAATCTTTTTCCCCTTTCTTCTTTGGCT
TTTTGTTTtggatctttttcttttcttttcgctCAGCAAATAGTCTTACA
GATCGCATACGTATAGTCACAATAAACGATGCTCCGTATACTTTCGTTGA
TGGCAAATTTTACGACGCCGATAATGATATGTGTTCCGACGGTTTCTTAT
GTCAAATTCCGATACAAACGGATAGTTCCAGGCAACTTAATTACCAAAAG
TCTTGTTGTATCGGTTTCATACCGGATATTTTCCGCATGGTCATAAAGAA
CGTTGCTATACCGTTCGAAATGTACGTTGTTGCGGACGGGAAGTATGGCG
GATTCAAGAACGGTACGTGGAATGGAATGATCGCGGATGTTGCTTACGGG
AAAGCGGACATGGCGATGGCTGCCATCACCATCACGAAAGAACGGTCAGA
TTCTGTATCTTTTAGCGCCCCATTCATGTTCGACCAAACGGGAATCATAA
CAAAACCAGCAGTGGTTGAACTGGATTTTTTGAATTGGGAGTTTTTGGCG
CCTCTTTCCAAAGAGCTTCAAATTTATCTAGTGATTTTGGTTGTGGTTTG
TATGCTGTTGCTttacttctttgaaaatacaataTACTTTTACATTTATC
ACCACCATGGGTTCAGTCATAAAGCGTATTACTCATTCCTCGAAGGACTT
TCTCACATCTCTGGTGTAACTTTACAAAGAGATCTTGGCGGGAAACATCC
TTTACGCCCAGCCGCCCGTATCATGTGTTTGTTTTTTGCTATTGGGATGG
TAATAATTGTTTCGACTTACACAGCCGTTTTGGCAGCACAAAGTTTGAAG
AGTAAAGAGAGAGAGCCTCTACAAGGAGGATCACAAGATGTTAGAGTGAG
TATTTTATTCTAGTGAGATTTTGTCTGTTCTTTCCACTTTCAAGAAGTgg
tgtaaaataatttttttactatGAGAGAAACCTTTGGTCAGCTTATTCAG
CTTATCAGAGGtttcaaaaatgaatgaaattatGAAAGTGGTCAAATTTA
CTGTATCATAAACTTATCGTTTGAACCGTCACCGTGAATTTGTTCACTTA
GCTAAATATAAGCTTTAGATAGAGAAAattaatatttccatatttttcag
TTCCGGAATCCAACCAACGAATTCCGATTCGGTATATTACGTGATAGCTC
ATACGAATCTTTCTTCAAAAACGGGGAAACGGATTTACTAAAACGGATGA
GTGTGTTCATGGAACCGTACAATTATGACACCCTTGCTGAGGGTATGGAT
ATGGTGCGAAATGGGTGTGTATACTAAATATGAATAGCAAATTTCAACTA
TATCTTTATAGTagtcgagttatggagtaagatttATAAGGTATGGTTAA
CTGAAGGGAagagaaaatttgttcgagttagggagacattcgagttaaag
aggtcGGCCTTAATTCAACCACAAAATCATGATGTGTAAGTATTTTACTG
TATTTACGACTAAAGCATTATCATTTTGAATTAAAACGTTCATCAATATT
TCTTTCAGTACTTTGCAAGCTTCATTCAGTGATTTCGCTTTCCTGCATTT
CTATTTATCAAAAGATCGTTCATGTCAACTCAAATTGGTCAAAGATAAAC
TCTACTTCTTTGGCCTTGGGTTCCCAATGGCGAAAGATTTTCCTTATCGA
GAGCTGATTAATCAAGgcattttgaaatttaccaGTAAAGACATGATAGC
AGAGTTACAGGCCAAATGGTTCGATAATATTTGCCAACCGAATTTTTTTG
TGACAAGCAATACGCAACTTTCGATTAAATTTTTTGGTGGTTTGGTATTC
ATACTAGCGATGACGATTATTGGAGCTTTGTTGTTTCTGTACCCAGAACA
TTTGTGGTGGAAATATTTTCATGAGAAAGTCTTGAAACtgatgaaaagga
agattttaaaaAGTGAATTGAAAAGTCCGGTGACGTAAAAATTGTCGTGG
AAGATTTTAAActggaaatttaatttctgaaagacaatagaccttttcat
aaattacgaacatcacttgcctcgcattcaaacaattaccatggtgatta
tgtctcttgatACATTATGATGTTTTAATGAataaaaagtagttttaata
aaatccgctgggagttaatcgccatggcaataatttcaaaacgaggcaag
tgatgttcgtaaagTAATTTTCGAAAATGTCTATTACCGGCATCGGAAAG
AAGGATATGGAAAAGTTCTAATGGGTCCAATACCATAACAGAGATGATTG
aaactaatgatgaaaaaaatattttattcttcAAGAAGAAGCCCGGTACC
ATGTGCGTATGTGGAGACAAAAATTAGGGTGTCAAAATTGCGTACCCTAG
CAGTGCAAAGAAAATTCTgtcaaatttgagtaaatttggatGGACAATCG
ACCTCCCGGTGCAATTCCTTGAATATTTTTGTACAAATAGAATTGGTCAG
ATGTCAAAAAATCCCCGCGCGTGTTCGATTTCGAGTTACCAAGACTCTAC
TGTATCAAAACTTGTTGACTGGGTTATCGAGACTCTACTGTATCAAAACT
TGTTGACTGGGTTATCGAGACTCTACTGTATCAAAACTTGTTGACTGAGT
TATCGAGACTCTACTGTATCAAAACTTGTTGACTGGGTTATCGAGACTCT
ACTGTATCAAAACTTGTTGACTGGGTTATCGAGACTCTACTGTATCAAAA
CTTGTTGACTGAGTTATCGAGACTCTACTGTATCAAAACTTGTTGACTGG
GTTATCGAGACTCTACTGTATCAAAACTTGTTGACTGGGTTATCGAGACT
CTACTGTATCAAAATTTGTTGACTGGGTGAATGATGTAGATTCGACATGA
ACACTGCTCTCTATATCAACTAGATTATGAAGACATTTTAGCTGATGAGG
GTTTTGGTGACAAAAATGAGTCAGCTCAGTTCTTTTTCTCGTGATGACCG
ATTAGAAAGTGTATTTGTATTTCAGTTCACTACAAcgcaaaatactaaga
acaggacgaaaaatataaaaacagaaATGGTACAATAACATTGAAACAAC
AAAAACTACATAACCTTCGATCCATTAAAAGTACTCATTTTTTACAAGCA
AAATTATCATAAGGCTTAAGGCTCAGGCCTTAAAATCTATACGAGTCTTT
AAGTCCCTTAGCCTCCAGAGCTATATGTATAAAAATGGTCAATTTTGATA
AGACCTTGGCACTCATCCGTTGGATCgaaagttgttttttgaaataaagc
tTTGAAGGACAAAAAAACGTTCAATAAATAATCTtaatcttatataaaaa
ataattcaaattctaaAGAATATTCCAGTATCATAAAATTAACTCCCTAA
CATAATacacgtttctttataagaacatccaacatttttgaagcctttgg
acgttcttaactttttgagttttaagcctaaaaatgttctcaacatgttc
ttattttcaccattttttgagcattttttgactatttttctaAGAGATCA
GCTATTTTAATGTCGGCAAAGCctcagaatgttcttaacttgttcttaac
atttcggccatcgaatatgttcttatattgtttgttcttataaagaaaaa
cgtaTAGTTACATAGCTTCCTAAATATTTAGTATTTAGCTTTTAAGGTAT
ACCTAGACACCTAGTTACTCTCTCAACTACCCAAATAAATAGGAAATGGA
AAAATCGTTATTCCAAATACCACAAAAGGAAATATATAGACTtttcagaa
aatattttcaaaaagattgaACGGGAGATTTTTATTGGGCAAAATGTGCA
CTTTAGACAAATGTCAGCATCTTCCAATATAGAATACGTATGAcgtaatg
ggctcttccaaagAAAAATCCACCATAAGGGGAGGATGATATATTTTCCT
GAGAAATTTGACAAAGGGTAAATTAAAgtgtcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007486XLOC_007486Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013399-exon-sc0000167-1491911889:418518..419141TCONS_00013399-exon-sc0000167-1491911889:418518..419141Clytia hemisphaericaexon
TCONS_00013399-exon-sc0000167-1510915933:418518..419141TCONS_00013399-exon-sc0000167-1510915933:418518..419141Clytia hemisphaericaexon
TCONS_00013399-exon-sc0000167-1575043694:418518..419141TCONS_00013399-exon-sc0000167-1575043694:418518..419141Clytia hemisphaericaexon
TCONS_00013399-exon-sc0000167-1491911889:421006..421541TCONS_00013399-exon-sc0000167-1491911889:421006..421541Clytia hemisphaericaexon
TCONS_00013399-exon-sc0000167-1510915933:421006..421541TCONS_00013399-exon-sc0000167-1510915933:421006..421541Clytia hemisphaericaexon
TCONS_00013399-exon-sc0000167-1575043694:421006..421541TCONS_00013399-exon-sc0000167-1575043694:421006..421541Clytia hemisphaericaexon
TCONS_00013399-exon-sc0000167-1491911889:421889..422103TCONS_00013399-exon-sc0000167-1491911889:421889..422103Clytia hemisphaericaexon
TCONS_00013399-exon-sc0000167-1510915933:421889..422103TCONS_00013399-exon-sc0000167-1510915933:421889..422103Clytia hemisphaericaexon
TCONS_00013399-exon-sc0000167-1575043694:421889..422103TCONS_00013399-exon-sc0000167-1575043694:421889..422103Clytia hemisphaericaexon
TCONS_00013399-exon-sc0000167-1491911889:422304..423112TCONS_00013399-exon-sc0000167-1491911889:422304..423112Clytia hemisphaericaexon
TCONS_00013399-exon-sc0000167-1510915933:422304..423112TCONS_00013399-exon-sc0000167-1510915933:422304..423112Clytia hemisphaericaexon
TCONS_00013399-exon-sc0000167-1575043694:422304..423112TCONS_00013399-exon-sc0000167-1575043694:422304..423112Clytia hemisphaericaexon
TCONS_00013399-exon-sc0000167-1491911889:423368..423531TCONS_00013399-exon-sc0000167-1491911889:423368..423531Clytia hemisphaericaexon
TCONS_00013399-exon-sc0000167-1510915933:423368..423531TCONS_00013399-exon-sc0000167-1510915933:423368..423531Clytia hemisphaericaexon
TCONS_00013399-exon-sc0000167-1575043694:423368..423531TCONS_00013399-exon-sc0000167-1575043694:423368..423531Clytia hemisphaericaexon
TCONS_00013399-exon-sc0000167-1491911889:423776..426200TCONS_00013399-exon-sc0000167-1491911889:423776..426200Clytia hemisphaericaexon
TCONS_00013399-exon-sc0000167-1510915933:423776..426200TCONS_00013399-exon-sc0000167-1510915933:423776..426200Clytia hemisphaericaexon
TCONS_00013399-exon-sc0000167-1575043694:423776..426200TCONS_00013399-exon-sc0000167-1575043694:423776..426200Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:418518..426200 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.137959	0.0796261	0.0933085	0.130494	0.197113	0.14883	0.959847	1.2049	0.702476	0.592224	0.161531	0.442835	1.36296e-10	0	0.0701544	0.0732593	0.163544	0.165538	0.798809	0.727411	0.725995	0.332905	0.256195	0.405434	0.72297	7.8055e-08	0.235774	0.191101	0.256869	0.244554
Blast
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BLAST of TCONS_00013399 vs. Swiss-Prot (Human)
Match: NMDE2 (Glutamate receptor ionotropic, NMDA 2B OS=Homo sapiens GN=GRIN2B PE=1 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 3.887e-43
Identity = 153/633 (24.17%), Postives = 279/633 (44.08%), Query Frame = 1 
Query:  919 FLMLLQRDLHKHVFKMAAFFSLLGPHQRWLIPNFDQNEPLGFGNVLPGQILSFQLKTNDNFGVTKLSDVVGWISETFQHFRNDQSLI-HKSSILYSTLMRRMYHSNI--------------------QYRQSP-LEIFYYNGENQGEWQSNQGFMRDNKLTFYGDVLNILRSSETNSLTDRIRIVTINDAPYTFVDGKFYDADNDMC-SDGFLCQIPIQTD--SSRQLNYQKSCCIGFIPDIFRMVIKNVAIPFEMYVVADGKYGGFKNGTWNGMIADVAYGKADMAMAAITITKERSDSVSFSAPFMFDQTGIITKPAVVELDFLNWEFLAPLSKELQIYXXXXXXXXXXXXYF----FENTIYFYIYHHHGFSHKAYYSFLEGLSHISGVTLQRDLGGKHPLRPAARIMCLFFAIGMVIIVSTYTAVLAAQSLKSKEREPLQGGSQDVRFRNPTN---EFRFGILRDSSYESFFKNGETDLLKRMSVFMEPYNYDTLAEGMDMVRNGTLQASFSDFAFLHFYLSKDRSCQLKLVKDKLYFFGLGFPMA--KDFPYRELINQGILKFTSKDMIAELQAKWFDNICQPNFFVTSNTQLSIKFFGGLVFILAMTIIGALLFLYPEHL-WWKYFH 2712
             L+   ++   ++F++A    L G    W++P+    +        P  ++S      D     ++ D +  I+       ++ S I    S  Y+T  +R+Y SN+                     Y+  P L I   N E +  W+   G  +D  L     V   +         D + IVT+ +AP+  V+    D  +  C  +   CQ  I T+  +  +  Y K CC GF  DI + + K+V   +++Y+V +GK+G   NGTWNGMI +V   +A MA+ ++TI +ERS+ V FS PF+  +TGI    +          FL P S ++ + + +++++   +  F    F    Y              ++  + +  + G+     +  ++P    ++IM   +A   VI +++YTA LAA  ++ +  + + G S D +F+ P +    FRFG + + S E   +N   +    M  +M  +N   + + +  ++ G L A   D A L++   +D  C+L  +     F   G+ +A  KD  ++  ++  IL+      + EL+A W   IC        ++QL I    G+ ++L   +  +L+    EHL +W++ H
Sbjct:  228 ILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVPAEFPTGLISVSYDEWDYGLPARVRDGIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGRNLSFSEDGYQMHPKLVIILLNKERK--WE-RVGKWKDKSLQMKYYVWPRMCPETEEQEDDHLSIVTLEEAPFVIVES--VDPLSGTCMRNTVPCQKRIVTENKTDEEPGYIKKCCKGFCIDILKKISKSVKFTYDLYLVTNGKHGKKINGTWNGMIGEVVMKRAYMAVGSLTINEERSEVVDFSVPFI--ETGISVMVSRSNGTVSPSAFLEPFSADVWVMMFVMLLIVSAVAVFVFEYFSPVGYNRCLADGREPGGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYTANLAAFMIQEEYVDQVSGLS-DKKFQRPNDFSPPFRFGTVPNGSTERNIRNNYAE----MHAYMGKFNQRGVDDALLSLKTGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGKVFASTGYGIAIQKDSGWKRQVDLAILQLFGDGEMEELEALWLTGICHNEKNEVMSSQLDIDNMAGVFYMLGAAMALSLITFICEHLFYWQFRH 848
The following BLAST results are available for this feature:
BLAST of TCONS_00013399 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMDE23.887e-4324.17Glutamate receptor ionotropic, NMDA 2B OS=Homo sap... [more]
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