TCONS_00013401 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013401
Unique NameTCONS_00013401
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013401 ID=TCONS_00013401|Name=TCONS_00013401|organism=Clytia hemisphaerica|type=transcript|length=273bp
AACCTGTGGCATTAATAGCTTCAGTGATGGTTTGGTCACCAGTGTCATCT
TTCTCCTCCACATCTAGATCTTCCTCTGCGATGGAGGACACTGATGTCGG
AGGATCAACGAAGGAGTGTTCTCCCTCTCCTCCATCACGTGGTTTGATAG
TGGAAGATAGAGGAGTTTGGTGGCGTTTGGATGAACGTGTACTGGTGGTT
GCAGTGGAAGAAGAACGTGCTGTTGTTGGTTTTGTTGGACTGTCGTTTGT
TACCGAATCTTCACCCGAATCTA
Run BLAST on NCBI

transcript from alignment at sc0000167:491391..491740+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013401 ID=TCONS_00013401|Name=TCONS_00013401|organism=Clytia hemisphaerica|type=transcript|length=350bp|location=Sequence derived from alignment at sc0000167:491391..491740+ (Clytia hemisphaerica)
AACCTGTGGCATTAATAGCTTCAGTGATGGTTTGGTCACTAGTGTCATCT
TTCTCCTCCACATCTAGATCTTCCTCTGCGATGGAGGACACTGATGTCGG
AGGATCAACNGGTCACCAGTGTCATCTTTCTCCTCCACATCTAGATCTTC
CTCTGCGATGGAGGACACTGATGTCGGAGGATCAACGAAGGAGTGTTCTC
CCTCTCCTCCATCACGTGGTTTGATAGTGGAAGATAGAGGAGTTTGGTGG
CGTTTGGATGAACGTGTACTGGTGGTTGCAGTGGAAGAAGAACGTGCTGT
TGTTGGTTTTGTTGGACTGTCGTTTGTTACCGAATCTTCACCCGAATCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007488XLOC_007488Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013401-exon-sc0000167-1491911889:491391..491424TCONS_00013401-exon-sc0000167-1491911889:491391..491424Clytia hemisphaericaexon
TCONS_00013401-exon-sc0000167-1510915933:491391..491424TCONS_00013401-exon-sc0000167-1510915933:491391..491424Clytia hemisphaericaexon
TCONS_00013401-exon-sc0000167-1575043694:491391..491424TCONS_00013401-exon-sc0000167-1575043694:491391..491424Clytia hemisphaericaexon
TCONS_00013401-exon-sc0000167-1491911889:491502..491740TCONS_00013401-exon-sc0000167-1491911889:491502..491740Clytia hemisphaericaexon
TCONS_00013401-exon-sc0000167-1510915933:491502..491740TCONS_00013401-exon-sc0000167-1510915933:491502..491740Clytia hemisphaericaexon
TCONS_00013401-exon-sc0000167-1575043694:491502..491740TCONS_00013401-exon-sc0000167-1575043694:491502..491740Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:491391..491740 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.125104	9.5993	9.89019	5.47136	3.95789	0.683035	0	0.242768	0.715191	1.43258	3.77532	0	0	1.17608	2.62222	0	3.44015	1.8461	1.18421	4.09588	0.104364	3.48707	2.27782	1.7619	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013401 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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