TCONS_00013413 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013413
Unique NameTCONS_00013413
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1238

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013413 ID=TCONS_00013413|Name=TCONS_00013413|organism=Clytia hemisphaerica|type=transcript|length=1238bp
CATGACATGAAATTTTCTTAGAATATTTGAACCTTGTTGATTTCATCTGT
GTTCAATTTCTTCATGTCTttcctaaataaaaaaaaagttacagCACTGT
GAAGTTGGTCATTTTTGCCCGTTTTAgGCCTACTTCCAAGGGCTGTAACA
TTTCATCCAAGaattcaacttttcaaaaaaatttatcctttagATTTTTC
TccttaaaaatatctttccaacggtccTATAAATTTCTAACATAGCACGA
ATGGGTGCtgagaaaaggtaaaaaaaacaaaagcgtCGACATACTCTAGA
AAAACATTGTAATAATATGTAAAACCTAAAAAGTATTTCTAATAAATCAT
ATCCTGTCCATATTCTTCACGACCAACAAATTTCGCTTTACTTATGCTCC
ACTCTGGTTTATCTTTACAACGTTTGGGCATATACCGAACATGCGGCCAA
AATGCATTCAAATCAAAAGTTCGATTCTTCTGGCAAAAACTGGTAAATTC
CGGTATATGAGGAATGAAATATCTCCGTTTAGGTTCTTTATAATCACTGT
GTAGAATCCAATATTTCAACATTTGTAATTGATACGAACCATGCATCGCT
AAGTAAACATTACAAAAACCATTGAACATATACTGGTGCTCATTGTACGC
TGTTGCTTGATGTACAATTCTGTTATTATCAGGAAACCAGTTGATATCTA
ACTTCGATTCTTTAATCCAAAGGGCCACAGCTTGATCACCAAATGGATGA
CACGGTAACGTTGTATCAAGCTTTGATAAAGCTTCGTCAATGATATCACG
TGATAATAACATCCAGCCTTCATCTACTCTAATAACGTTATCTGTACAAT
GTGTGTAACCCCAATATAATCCGTTTTTCGGTCGATAAGGAAGTTCATAC
AATAAACGATCCATACAAATGAAATAATCATCATCAACACGCAAGAAGTA
TTGGAAATCGTAATTCTCGGTATACCATTGTAACATCCAAACCAAACGTT
CGGCAAATCTATGCCCACCTAATtaataaaaaacagaaaacaaaagaatg
atgTCATGATCGAAAGATTTACTACTAAGTGGAGACCTTCTGTGACAAGG
ACAATTAAACCGCTAATCTTAGGACCATCACAAAATGTCAAATTAGGGat
atagttgacgctctctaattcgacgttctactattcgataggccccctta
ttcgatgaaaatccaattccccttgaagattgaattag
Run BLAST on NCBI

transcript from alignment at sc0000167:99283..100870-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013413 ID=TCONS_00013413|Name=TCONS_00013413|organism=Clytia hemisphaerica|type=transcript|length=1588bp|location=Sequence derived from alignment at sc0000167:99283..100870- (Clytia hemisphaerica)
CATGACATGAAATTTTCTTAGAATATTTGAACCTTGTTGATTTCATCTGT
GTTCAATTTCTTCATGTCTTTCCTAAATAAAAAAAAAGTTACAGCACTGT
GAAGTTGGTCATTTTTGCCCGTTTTAGGCTAGCCTAGAAATCTAAGCTAG
TTTGATTCAGTCACTTGGATAAATGTGATGGTTAAGTTGTGACTGAATAA
CTAAGGCAAATTTAAAATCCGTAAATATAAAAAATCTTAAAGCGCCGAAA
ACGCTATATTGCATAAGCCGTGTGTCCTAGCCTTGTGAATACGGGCTTAG
TTAACTACATGTTTTTTTTTTTATAAGCAAGTGTCTGCACCTATATCAGG
CTCGCATTATGCTTAGCATTCTATTGTTCTCAAACAATAGAGCCATTGTT
TAGGTGCCAAAAACTGAGCCTGCGTATGCTTATAAACGTTATGCTTATAA
AAGAAAAAACATGTAGGCTAGTTTTAGGCCTACTTCCAAGGGCTGTAACA
TTTCATCCAAGAATTCAACTTTTCAAAAAAATTTATCCTTTAGATTTTTC
TCCTTAAAAATATCTTTCCAACGGTCCTATAAATTTCTAACATAGCACGA
ATGGGTGCTGAGAAAAGGTAAAAAAAACAAAAGCGTCGACATACTCTAGA
AAAACATTGTAATAATATGTAAAACCTAAAAAGTATTTCTAATAAATCAT
ATCCTGTCCATATTCTTCACGACCAACAAATTTCGCTTTACTTATGCTCC
ACTCTGGTTTATCTTTACAACGTTTGGGCATATACCGAACATGCGGCCAA
AATGCATTCAAATCAAAAGTTCGATTCTTCTGGCAAAAACTGGTAAATTC
CGGTATATGAGGAATGAAATATCTCCGTTTAGGTTCTTTATAATCACTGT
GTAGAATCCAATATTTCAACATTTGTAATTGATACGAACCATGCATCGCT
AAGTAAACATTACAAAAACCATTGAACATATACTGGTGCTCATTGTACGC
TGTTGCTTGATGTACAATTCTGTTATTATCAGGAAACCAGTTGATATCTA
ACTTCGATTCTTTAATCCAAAGGGCCACAGCTTGATCACCAAATGGATGA
CACGGTAACGTTGTATCAAGCTTTGATAAAGCTTCGTCAATGATATCACG
TGATAATAACATCCAGCCTTCATCTACTCTAATAACGTTATCTGTACAAT
GTGTGTAACCCCAATATAATCCGTTTTTCGGTCGATAAGGAAGTTCATAC
AATAAACGATCCATACAAATGAAATAATCATCATCAACACGCAAGAAGTA
TTGGAAATCGTAATTCTCGGTATACCATTGTAACATCCAAACCAAACGTT
CGGCAAATCTATGCCCACCTAATTAATAAAAAACAGAAAACAAAAGAATG
ATGTCATGATCGAAAGATTTACTACTAAGTGGAGACCTTCTGTGACAAGG
ACAATTAAACCGCTAATCTTAGGACCATCACAAAATGTCAAATTAGGGAT
ATAGTTGACGCTCTCTAATTCGACGTTCTACTATTCGATAGGCCCCCTTA
TTCGATGAAAATCCAATTCCCCTTGAAGATTGAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007493XLOC_007493Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013413-exon-sc0000167-1575043694:100744..100870TCONS_00013413-exon-sc0000167-1575043694:100744..100870Clytia hemisphaericaexon
TCONS_00013413-exon-sc0000167-1575043694:99283..100393TCONS_00013413-exon-sc0000167-1575043694:99283..100393Clytia hemisphaericaexon
TCONS_00013413-exon-sc0000167-1510915933:100744..100870TCONS_00013413-exon-sc0000167-1510915933:100744..100870Clytia hemisphaericaexon
TCONS_00013413-exon-sc0000167-1510915933:99283..100393TCONS_00013413-exon-sc0000167-1510915933:99283..100393Clytia hemisphaericaexon
TCONS_00013413-exon-sc0000167-1491911889:100744..100870TCONS_00013413-exon-sc0000167-1491911889:100744..100870Clytia hemisphaericaexon
TCONS_00013413-exon-sc0000167-1491911889:99283..100393TCONS_00013413-exon-sc0000167-1491911889:99283..100393Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:99283..100870 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.75281	9.64349	2.72786	2.86058	6.31224	5.45762	13.9723	14.0072	7.03155	6.26035	6.43529	7.46513	4.41725	6.74542	14.4125	11.0618	12.7232	14.734	9.26019	9.42614	19.1763	18.1051	21.9672	20.2487	0.00534812	0.160409	17.6009	18.2541	13.4505	13.1389
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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