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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013421 ID=TCONS_00013421|Name=TCONS_00013421|organism=Clytia hemisphaerica|type=transcript|length=1875bp
GTAAAATTTGACGGATTTTTCCTTATACGTATTTTATTTATAGAGAAtga
agtaaaaacaaaaattaaaagtaCTTGCAAGGTGTTGTGATAACCTGCAT
AATGTTAACGTCAACGTCTCTGCACGCGACCACGTCAAACGTTGCGTACT
TAGTGAACGAATTCCAATATACAAGAAGCACTCTATCTATAAACCATTAT
GGTGATACAGAGCTCCAAAACATGGCGCCTAAGCCTCAGGATGAAATGTC
TGAATCAGACGGTTACGATCTAGACGAACTAAAAGCAGCTGATCAACAAA
AACCGTTTCGGGAACGTGGTAAACGGATTCGGATTAACGTCTCCGGTCGG
ATTTTCGAAAGTTACCAAAGAACATTAGTCTCTAAAGAAGGTTCGATTTT
CGGATATAGCAGTATTATGAAATATTATGATGAGGAAAATAAAGAATTCT
TTTTCGACAAAGATCCCCACACATTCGAAGCGATCTTAGTTTATTTACAA
TGTGGACTCTTACAGCAACCGGAAAAAGTAGATTTCAAAGCGTTCATTGA
AGATCTACAGTTTTTCGGGTTCGGAGACAAAGCGTATCATATTTACCGGC
GTGAAGCTATCATACCGGATACATCATGCGCAAATCAAGGAACACGTGAA
GAAATCGGATTTCGCCTTTTTCTTTATAACATGCTGGAGTATCCAGATAT
CAACTTGACCGCACAAATTTTTGCCGGGTTAACCAGTTTTATTATCTTCA
TCTCAATTATAGTATACTGTATCGAAAGTTTACCGTCAATGCATCCAAAC
GCTGTTGATAATCTTTCCTATGTCGAAGCATTCTGTGTAGTTTGGTTTAC
AATAGAACTTTCAGCCAGATTTATACTTTGCCCTGAAAAACTCAAATTCG
TGAAAAGTCTAATGAACTGGGTTGATTTAGTATCCATTGTACCGTTCTAT
ATAACTATACTGATGCCTGAGAATAAGGATTCGAACGTTGTAGGGTTGGC
CATGTTGCGTGTGTTACGTGTTGCACGGGTGTTTCGTGTCTTTAAACTGT
CACGCTACTCCAAAGCAATTTATCTTATCATTTTAACGATAAGCACCAGT
GTACGTGAACTAATGCTGCTTCTAATGTTTATCATCATTTTAATGGTTTT
ATTCGCAGCAGCTATTTATCAATTTGAACATGATGATCTggatgagaaaa
ataaatttaaaagcaTACCTCACACTTTTTGGATTGTTATTGTTACCATA
ACAACGGTCGGGTATGGAGATATGGTACCGTACACACCAGagGGTCAATT
TATcacctcaattttggcaatcaCTGGAGTGGTCATCGTAGCACTTCCTA
TACCCATCATCGTCAATAATTTCACACGATTCTATGAACGTATCATGTCC
AAATCATCCAAATATCAATTCGAGTTTGATGAAAGTAAATCCGAGGAGAA
TAAAGAAACACACTTGGTAGTGACTCAATGTGAAAGTACTATCTAAAATA
CACCATTGAGACACGATTCAGACAcgtttaaattttaaatcaagttctAG
TTGCGTTAGGAGAacagtcaaaaaagtttcaaaaatgaaaaaagggaaat
aatgtttctatttttgtttttagggTTTCATTGACTTTTCATTGATTCTT
GTATCAACCCCGTCAATTTAAAGTTTTGCtcatatttttgaaactttgct
tCGACTTGTTTCGACCACTTTCTATTTGAGATTTCATCTACGGTCCAAAA
TATTCTCTACCATCCTCACTCTTTATGTACATAAAATTGTTTATTCGTAA
TCGAACTTATATTAGGAGTATATTACGAAAGATTGTATATAATTATGCAA
ATGTATTATGAAATTGAAGAAAGAG Run BLAST on NCBI protein sequence of TCONS_00013421-protein >TCONS_00013421-protein ID=TCONS_00013421-protein|Name=TCONS_00013421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp
MLTSTSLHATTSNVAYLVNEFQYTRSTLSINHYGDTELQNMAPKPQDEMS
ESDGYDLDELKAADQQKPFRERGKRIRINVSGRIFESYQRTLVSKEGSIF
GYSSIMKYYDEENKEFFFDKDPHTFEAILVYLQCGLLQQPEKVDFKAFIE
DLQFFGFGDKAYHIYRREAIIPDTSCANQGTREEIGFRLFLYNMLEYPDI
NLTAQIFAGLTSFIIFISIIVYCIESLPSMHPNAVDNLSYVEAFCVVWFT
IELSARFILCPEKLKFVKSLMNWVDLVSIVPFYITILMPENKDSNVVGLA
MLRVLRVARVFRVFKLSRYSKAIYLIILTISTSVRELMLLLMFIIILMVL
FAAAIYQFEHDDLDEKNKFKSIPHTFWIVIVTITTVGYGDMVPYTPEGQF
ITSILAITGVVIVALPIPIIVNNFTRFYERIMSKSSKYQFEFDESKSEEN
KETHLVVTQCESTI Run BLAST on NCBI transcript from alignment at sc0000167:353824..356409- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013421 ID=TCONS_00013421|Name=TCONS_00013421|organism=Clytia hemisphaerica|type=transcript|length=2586bp|location=Sequence derived from alignment at sc0000167:353824..356409- (Clytia hemisphaerica)
GTAAAATTTGACGGATTTTTCCTTATACGTATTTTATTTATAGAGAATGA
AGTAAAAACAAAAATTAAAAGTACTTGCAAGGTGTTGTGATAACCTGCAT
AATGTTAACGTCAACGTCTCTGCACGCGACCACGTCAAACGTTGCGTACT
TAGTGAACGAATTCCAATATACAAGAAGCACTCTATCTATAAACCATTAT
GGTGATACAGAGCTCCAAAACATGGCGCCTAAGCCTCAGGATGAAATGTC
TGAATCAGACGGTTACGATCTAGACGAACTAAAAGCAGCTGATCAACAAA
AACCGTTTCGGGAACGTGGTAAACGGATTCGGATTAACGTCTCCGGTCGG
ATTTTCGAAAGTTACCAAAGAACATTAGTCTCTAAAGAAGGTTCGATTTT
CGGATATAGCAGTATTATGAAATATTATGATGAGGAAAATAAAGAATTCT
TTTTCGACAAAGATCCCCACACATTCGAAGCGATCTTAGTTTATTTACAA
TGTGGACTCTTACAGCAACCGGAAAAAGTAGATTTCAAAGCGTTCATTGA
AGATCTACAGTTTTTCGGGTTCGGAGACAAAGCGTATCATATTTACCGGC
GTGAAGCTATCATACCGGATACATCATGCGCAAATCAAGGAACACGTGAA
GAAATCGGATTTCGCCTTTTTCTTTATAACATGCTGGAGTATCCAGATAT
CAACTTGACCGCACAAATTTTTGCCGGGTTAACCAGTTTTATTATCTTCA
TCTCAATTATAGTATACTGTATCGAAAGTTTACCGTCAATGCATCCAAAC
GCTGTTGATAATCTTTCCTATGTCGAAGCATTCTGTGTAGTTTGGTTTAC
AATAGAACTTTCAGCCAGATTTATACTTTGCCCTGAAAAACTCAAATTCG
TGAAAAGTCTAATGAACTGGGTTGATTTAGTATCCATTGTACCGTTCTAT
ATAACTATACTGATGCCTGAGAATAAGGATTCGAACGTTGTAGGGTTGGC
CATGTTGCGTGTGTTACGTGTTGCACGGGTGTTTCGTGTCTTTAAACTGT
CACGCTACTCCAAAGCAATTTATCTTATCATTTTAACGATAAGCACCAGT
GTACGTGAACTAATGCTGCTTCTAATGTTTATCATCATTTTAATGGTTTT
ATTCGCAGCAGCTATTTATCAATTTGAACATGATGATCTGGATGAGAAAA
ATAAATTTAAAAGCATACCTCACACTTTTTGGATTGTTATTGTTACCATA
ACAACGGTCGGGTATGGAGATATGGTACCGTACACACCAGGTAAGACAAA
CCTAATGATGATCTTCGACTAGGTTATGAACCATAGATTTATAAAGCCCG
AAGGGCTAGATAGCGTACTTTTGCTGAAAAGTGTGCCGAGGTTAGGTAAG
AAATCCTACCTAAGTCACGTGACGTTACAATAGAGTTTCAGCGCTTGACC
AATTTGAAGCTTCGCGGGTTTTCGAAAACAAATAGCAACAATATTTTTTC
CGATATTCACTTTTTTTTGCCTGCGATGGCTTAAAGCACATCTAGCCCTT
CGAGCTTTATAAATCTATAGTATGAACGTACTTCCACTATCAAACAAATA
GAATCTTTAAGAATAGAAACAGGTTTTAAAAACATTAATAAAGAAAATAA
TCAAAACGTTTCACCAAAATAACAAAGCAACATTCAGAACACATTACATT
GATATACAGTGTGTCCCAAAAAAAGCGGACAAATTTTTATGTAAAGTAAA
ATCCTCGTAATTTATGCCAAATTTTATGACTCGTATACTCAATATTTCAA
TGTCAAAAACCTTTTCAATCATCTTGGGAATTGAATATCTATTGATTGAA
CAGAATAATCTTATTTCAATTATTCTAAGCCAAGTTTAGATATGAGTTTT
AATGATTTTACTATTTAAAATTGTCCGCTTTTTTTGGAACACACTGTAAA
TATAGCTGTTTGAGAAGCTACTCATAACATTACAATTTGTTTATTTTTCA
GAGGGTCAATTTATCACCTCAATTTTGGCAATCACTGGAGTGGTCATCGT
AGCACTTCCTATACCCATCATCGTCAATAATTTCACACGATTCTATGAAC
GTATCATGTCCAAATCATCCAAATATCAATTCGAGTTTGATGAAAGTAAA
TCCGAGGAGAATAAAGAAACACACTTGGTAGTGACTCAATGTGAAAGTAC
TATCTAAAATACACCATTGAGACACGATTCAGACACGTTTAAATTTTAAA
TCAAGTTCTAGTTGCGTTAGGAGAACAGTCAAAAAAGTTTCAAAAATGAA
AAAAGGGAAATAATGTTTCTATTTTTGTTTTTAGGGTTTCATTGACTTTT
CATTGATTCTTGTATCAACCCCGTCAATTTAAAGTTTTGCTCATATTTTT
GAAACTTTGCTTCGACTTGTTTCGACCACTTTCTATTTGAGATTTCATCT
ACGGTCCAAAATATTCTCTACCATCCTCACTCTTTATGTACATAAAATTG
TTTATTCGTAATCGAACTTATATTAGGAGTATATTACGAAAGATTGTATA
TAATTATGCAAATGTATTATGAAATTGAAGAAAGAG Coding sequence (CDS) from alignment at sc0000167:353824..356409- >TCONS_00013421 ID=TCONS_00013421|Name=TCONS_00013421|organism=Clytia hemisphaerica|type=CDS|length=2790bp|location=Sequence derived from alignment at sc0000167:353824..356409- (Clytia hemisphaerica)
AGGGTCAATTTATCACCTCAATTTTGGCAATCACTGGAGTGGTCATCGTA
GCACTTCCTATACCCATCATCGTCAATAATTTCACACGATTCTATGAACG
TATCATGTCCAAATCATCCAAATATCAATTCGAGTTTGATGAAAGTAAAT
CCGAGGAGAATAAAGAAACACACTTGGTAGTGACTCAATGTGAAAGTACT
ATCTAAATGTTAACGTCAACGTCTCTGCACGCGACCACGTCAAACGTTGC
GTACTTAGTGAACGAATTCCAATATACAAGAAGCACTCTATCTATAAACC
ATTATGGTGATACAGAGCTCCAAAACATGGCGCCTAAGCCTCAGGATGAA
ATGTCTGAATCAGACGGTTACGATCTAGACGAACTAAAAGCAGCTGATCA
ACAAAAACCGTTTCGGGAACGTGGTAAACGGATTCGGATTAACGTCTCCG
GTCGGATTTTCGAAAGTTACCAAAGAACATTAGTCTCTAAAGAAGGTTCG
ATTTTCGGATATAGCAGTATTATGAAATATTATGATGAGGAAAATAAAGA
ATTCTTTTTCGACAAAGATCCCCACACATTCGAAGCGATCTTAGTTTATT
TACAATGTGGACTCTTACAGCAACCGGAAAAAGTAGATTTCAAAGCGTTC
ATTGAAGATCTACAGTTTTTCGGGTTCGGAGACAAAGCGTATCATATTTA
CCGGCGTGAAGCTATCATACCGGATACATCATGCGCAAATCAAGGAACAC
GTGAAGAAATCGGATTTCGCCTTTTTCTTTATAACATGCTGGAGTATCCA
GATATCAACTTGACCGCACAAATTTTTGCCGGGTTAACCAGTTTTATTAT
CTTCATCTCAATTATAGTATACTGTATCGAAAGTTTACCGTCAATGCATC
CAAACGCTGTTGATAATCTTTCCTATGTCGAAGCATTCTGTGTAGTTTGG
TTTACAATAGAACTTTCAGCCAGATTTATACTTTGCCCTGAAAAACTCAA
ATTCGTGAAAAGTCTAATGAACTGGGTTGATTTAGTATCCATTGTACCGT
TCTATATAACTATACTGATGCCTGAGAATAAGGATTCGAACGTTGTAGGG
TTGGCCATGTTGCGTGTGTTACGTGTTGCACGGGTGTTTCGTGTCTTTAA
ACTGTCACGCTACTCCAAAGCAATTTATCTTATCATTTTAACGATAAGCA
CCAGTGTACGTGAACTAATGCTGCTTCTAATGTTTATCATCATTTTAATG
GTTTTATTCGCAGCAGCTATTTATCAATTTGAACATGATGATCTGGATGA
GAAAAATAAATTTAAAAGCATACCTCACACTTTTTGGATTGTTATTGTTA
CCATAACAACGGTCGGGTATGGAGATATGGTACCGTACACACCAGAGGGT
CAATTTATCACCTCAATTTTGGCAATCACTGGAGTGGTCATCGTAGCACT
TCCTATACCCATCATCGTCAATAATTTCACACGATTCTATGAACGTATCA
TGTCCAAATCATCCAAATATCAATTCGAGTTTGATGAAAGTAAATCCGAG
GAGAATAAAGAAACACACTTGGTAGTGACTCAATGTGAAAGTACTATCTA
AATGTTAACGTCAACGTCTCTGCACGCGACCACGTCAAACGTTGCGTACT
TAGTGAACGAATTCCAATATACAAGAAGCACTCTATCTATAAACCATTAT
GGTGATACAGAGCTCCAAAACATGGCGCCTAAGCCTCAGGATGAAATGTC
TGAATCAGACGGTTACGATCTAGACGAACTAAAAGCAGCTGATCAACAAA
AACCGTTTCGGGAACGTGGTAAACGGATTCGGATTAACGTCTCCGGTCGG
ATTTTCGAAAGTTACCAAAGAACATTAGTCTCTAAAGAAGGTTCGATTTT
CGGATATAGCAGTATTATGAAATATTATGATGAGGAAAATAAAGAATTCT
TTTTCGACAAAGATCCCCACACATTCGAAGCGATCTTAGTTTATTTACAA
TGTGGACTCTTACAGCAACCGGAAAAAGTAGATTTCAAAGCGTTCATTGA
AGATCTACAGTTTTTCGGGTTCGGAGACAAAGCGTATCATATTTACCGGC
GTGAAGCTATCATACCGGATACATCATGCGCAAATCAAGGAACACGTGAA
GAAATCGGATTTCGCCTTTTTCTTTATAACATGCTGGAGTATCCAGATAT
CAACTTGACCGCACAAATTTTTGCCGGGTTAACCAGTTTTATTATCTTCA
TCTCAATTATAGTATACTGTATCGAAAGTTTACCGTCAATGCATCCAAAC
GCTGTTGATAATCTTTCCTATGTCGAAGCATTCTGTGTAGTTTGGTTTAC
AATAGAACTTTCAGCCAGATTTATACTTTGCCCTGAAAAACTCAAATTCG
TGAAAAGTCTAATGAACTGGGTTGATTTAGTATCCATTGTACCGTTCTAT
ATAACTATACTGATGCCTGAGAATAAGGATTCGAACGTTGTAGGGTTGGC
CATGTTGCGTGTGTTACGTGTTGCACGGGTGTTTCGTGTCTTTAAACTGT
CACGCTACTCCAAAGCAATTTATCTTATCATTTTAACGATAAGCACCAGT
GTACGTGAACTAATGCTGCTTCTAATGTTTATCATCATTTTAATGGTTTT
ATTCGCAGCAGCTATTTATCAATTTGAACATGATGATCTGGATGAGAAAA
ATAAATTTAAAAGCATACCTCACACTTTTTGGATTGTTATTGTTACCATA
ACAACGGTCGGGTATGGAGATATGGTACCGTACACACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013421-exon-sc0000167-1575043694:355120..356409 | TCONS_00013421-exon-sc0000167-1575043694:355120..356409 | Clytia hemisphaerica | exon |
| TCONS_00013421-exon-sc0000167-1575043694:353824..354408 | TCONS_00013421-exon-sc0000167-1575043694:353824..354408 | Clytia hemisphaerica | exon |
| TCONS_00013421-exon-sc0000167-1510915933:355120..356409 | TCONS_00013421-exon-sc0000167-1510915933:355120..356409 | Clytia hemisphaerica | exon |
| TCONS_00013421-exon-sc0000167-1510915933:353824..354408 | TCONS_00013421-exon-sc0000167-1510915933:353824..354408 | Clytia hemisphaerica | exon |
| TCONS_00013421-exon-sc0000167-1491911889:355120..356409 | TCONS_00013421-exon-sc0000167-1491911889:355120..356409 | Clytia hemisphaerica | exon |
| TCONS_00013421-exon-sc0000167-1491911889:353824..354408 | TCONS_00013421-exon-sc0000167-1491911889:353824..354408 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000167 | supercontig | sc0000167:353824..356409 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005249 | voltage-gated potassium channel activity |
| GO:0005216 | ion channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0008076 | voltage-gated potassium channel complex |
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006813 | potassium ion transport |
| GO:0055085 | transmembrane transport |
| GO:0006811 | ion transport |
| GO:0051260 | protein homooligomerization |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| biological_process |
GO:0006813 |
potassium ion transport |
| biological_process |
GO:0051260 |
protein homooligomerization |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| cellular_component |
GO:0008076 |
voltage-gated potassium channel complex |
| molecular_function |
GO:0005216 |
ion channel activity |
| molecular_function |
GO:0005249 |
voltage-gated potassium channel activity |
Blast
BLAST of TCONS_00013421 vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2) HSP 1 Score: 159.844 bits (403), Expect = 3.300e-42 Identity = 146/420 (34.76%), Postives = 241/420 (57.38%), Query Frame = 3
Query: 222 MAPKPQDEMSESDGYDLDELKAADQQKPFRERGKRIRINVSGRIFESYQRTLVSKEGSIFGY-SSIMKYYDEENKEFFFDKDPHTFEAILVYLQCG-LLQQPEKVDFKAFIEDLQFFGFGDKAYHIYRR-EAIIPDTSCANQGTREEIGFRLFLYNMLEYPDINLTAQIFAGLTXXXXXXXXXVYCIESLPSMHPNA--------VDNLSY-------------VEAFCVVWFTIELSARFILCPEKLKFVKSLMNWVDLVSIVPFYITILMP------ENKDSNXXXXXXXXXXXXXXXXXXXXXSRYSKAIYLIILTISTSVREXXXXXXXXXXXXXXXAAAIYQFEHDDLDEKNKFKSIPHTFWXXXXXXXXXGYGDMVPYTPEGQFITSILAITGXXXXXXXXXXXXNNFTRFYER 1391
M+ + DE S + G+ D E +R+ IN+SG FE+ +TL ++ G M+Y+D E+FFD++ +F+AIL Y Q G L++P V F E+++F+ G++A +R E I + + E ++ ++ + EYP+ + A++ A ++ +I ISI+++C+E+LP + + +DN + VE C++WF+ EL RF CP K F K++MN++D+V+I+P++IT+ K LA+LRV+R+ RVFR+FKLSR+SK + ++ T+ S+REL LL+ F+ I ++LF++A+Y E ++ + + F SIP FW +V++TTVGYGDM P T G+ + S+ AI GV+ +ALP+P+IV+NF FY R
Sbjct: 4 MSGENVDEASAAPGHPQDGSYPRQADHDDHECCERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKE----EERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEAE--SHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 417
The following BLAST results are available for this feature:
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