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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013423 ID=TCONS_00013423|Name=TCONS_00013423|organism=Clytia hemisphaerica|type=transcript|length=1598bpRun BLAST on NCBI protein sequence of TCONS_00013423-protein >TCONS_00013423-protein ID=TCONS_00013423-protein|Name=TCONS_00013423-protein|organism=Clytia hemisphaerica|type=polypeptide|length=421bp MDWLKEPECVPEIVVVGPPGSGKRSISRLVADRLGCILIAKEDLVKCQNDRun BLAST on NCBI transcript from alignment at sc0000167:365649..380415- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013423 ID=TCONS_00013423|Name=TCONS_00013423|organism=Clytia hemisphaerica|type=transcript|length=14767bp|location=Sequence derived from alignment at sc0000167:365649..380415- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000167:365649..380415- >TCONS_00013423 ID=TCONS_00013423|Name=TCONS_00013423|organism=Clytia hemisphaerica|type=CDS|length=17724bp|location=Sequence derived from alignment at sc0000167:365649..380415- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013423 vs. Swiss-Prot (Human)
Match: KAD8 (Adenylate kinase 8 OS=Homo sapiens GN=AK8 PE=1 SV=1) HSP 1 Score: 374.4 bits (960), Expect = 2.122e-123 Identity = 186/449 (41.43%), Postives = 283/449 (63.03%), Query Frame = 3
Query: 9 LLKKLLIHQPDEPLQAIMDWL-KEPECVPEIVVVGPPGSGKRSISRLVADRLGCILIAKEDLV------------------KCQNDLEIVKTLKDRITQYDAIEKGYLIEGFPENRAQALQLQLEGIYPKHVVLLDAPDSVLSERVIGKRIDPMTGDVYHVTFHPPPSDAIHRVKPDPTSCKEDEMNERLAKHHRHIGGILRCYSNTFKMINADQPREDVLSQTLAYLQSKERNNAPHTPRVVLLGPTGAGKREQASLLCSKYHLVHVCCDDLIKQMLVNESELGQSMKPYEERGVRIPDELVTKALTMRLSQLDAVKRGWVLHGFPKTRMQLDSLIEQGYEPNRVVVLNIPSDTAVERISLRSVDPETGYRYHLLYNPPQSTEVKERLAMHPTDEESEVLKRYTDYQVNIKDIMEYFTTAQHVNGDQDRQAVFESIETIVVNPLPEKL 1298
+L++LLIHQP++P+ ++ L ++ + VP IV++GPP SGK +I+ + L L+ E+L+ K +V+ +++R+ + D I++G++++G PE R QAL++Q GI P+HV++L APD+VL ER +GKRIDP TG++YH TF PP I P E E ++L ++HR+I ++ Y K+I+ADQP DV Q L Y+QS R NAP TPRV+LLGP G+GK QA+LL KY LV+VCC L+K+ + + + G+ ++P+ E+ + +PD L+ K L+ RL Q D +++GWVLHG P+ Q L GY PNRV LN+P D+ +ER++LR +DP TG RYHL+Y PP + E++ RL +P D E +V + + N D+ + + +A +NGDQD VFE IE+ ++NPLP+K+
Sbjct: 30 MLEQLLIHQPEDPIPFMIQHLHRDNDNVPRIVILGPPASGKTTIAMWLCKHLNSSLLTLENLILNEFSYTATEARRLYLQRKTVPSALLVQLIQERLAEEDCIKQGWILDGIPETREQALRIQTLGITPRHVIVLSAPDTVLIERNLGKRIDPQTGEIYHTTFDWPPESEIQNRLMVPEDISELETAQKLLEYHRNIVRVIPSYPKILKVISADQPCVDVFYQALTYVQSNHRTNAPFTPRVLLLGPVGSGKSLQAALLAQKYRLVNVCCGQLLKEAVADRTTFGELIQPFFEKEMAVPDSLLMKVLSQRLDQQDCIQKGWVLHGVPRDLDQAHLLNRLGYNPNRVFFLNVPFDSIMERLTLRRIDPVTGERYHLMYKPPPTMEIQARLLQNPKDAEEQVKLKMDLFYRNSADLEQLYGSAITLNGDQDPYTVFEYIESGIINPLPKKI 478 The following BLAST results are available for this feature:
BLAST of TCONS_00013423 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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