TCONS_00013424 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013424
Unique NameTCONS_00013424
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1935

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013424 ID=TCONS_00013424|Name=TCONS_00013424|organism=Clytia hemisphaerica|type=transcript|length=1935bp
TCAAATTGATATAATATATCCAATACTTCATTTGAAGATGAAAGTTGTTT
GCTCAAAAGGTTTTGTGACTTTGTTAAAGAAATTATACCGTCATAATCTT
TTTGTAAAGAGTTGAATGATAAATTTCGCCAAATGTCTTGACAATGTTCT
AACGTATCGTCGTGATATCGAATAAAAGAAGTCTTATTTTTGGACGAAAA
TCGATAATCATTTCGAATGTCACCATTAAAAGTTGGACCATCGTAATCAA
AGATAACATTTTCGTAAAACACCAGAAGTCTTTGACCATATGCCAGATGC
CATGAAGTCATAACAGTAAGACAGACATTGATATCCATTTTGGTGAAATA
AATCCAGTTCATaactaaatttttctttataaagtCTGTGTTCTTTAAAA
TCCTAAGTGACAGTCAAACATCACAAACTTGTTTTCTAAGTCTAGAAATT
CCAgtgaaataaaatatataaagaaaGTATAGTAAAATCCTCATGACGAT
AGAAAACCTTTTCAAACACAATCCAAGAAATAAGAAGTATTCGGTCCCTC
CAAAAAGGAAAAGTatgattcttcttcttcttcacagCGGAGACGTTAAT
CGATTCTCACTTAGCGACCTACAGCGAATAAAATTGATCGTTGATGAGAA
AAGCTACAGTGCTCCTATTTCAAtcccaaaaaacaaaaacaaaaaaatgg
gaATAATATATGAAAGGGATTATATCAAAATTcctaaaataaagaaatta
gccttgatattttgtaaatatattAGAAGGAGAACCATAAACATTATATC
TATTATATCTATGGATATCTTCAAATTAAATGGATTGATAATCAATATTT
TTAAGGGAATCTTTTGGATACTAACACAAAGGAATAAAATTAACGATGTG
AATATTTGATAGGTCAAGGTTTTTAAATTCGTTATGAAAATAAACTCAGA
ACTTAGTCCTCAGACTTAAAAAGAATgatcgaaaattttcaaattagcaG
GTTTTTTGTaataaagaaattataaaattttttaaagaaactgaCTTTGG
ACAGCTAGTTTGGTGGGGCGTTGATATGAAAGTTTGGAGTTTGACAAACC
AAATTTACAAGCCTTGCTCAAATTTTGGGaataagaattaaaaaaatttt
ttctttaaattgaaattttagatgtaacatatttctttttttccttcttc
aaaATAACGagtgtttaatttttaaattgcatatttttcaaacaaaaaaa
aagcgTCCTATAAATAATATCTCAGTGGGTATGACGATAGAATAATATAT
CCTCGTTTACCAATAACAATTTCGtgcagaaaatttgaaaaactattTTG
CAAAAAAGCAATATTTGTTATTGAAAATGAGGATTTTCAAAACGTAGAAA
GCCACACGCATTCAAAATTGATTTCTGTAACAAAAACACTTTAGCACATT
ATTTTGTTCAAGCTAAGGACttatcaataaaattttcaatcaatACCCCC
TAGATATCAAAATATTAgtttattataatttttcataaatatcctaaaaa
tgataaaaaaaggaaaataaattacCAAAACATTGCAAATAGCTGCAAAA
GTCTTGGGAAAAAAGATTCTAGTAATGTTAGGGTAAAAATATTAAAGACA
ACTACAgaactacacgctttttcttttataagaataacttctataagaat
atcagggtgagatttcgggtttaaaacaataggcctattgtttagaacaa
tagaaaaataagaataatgcttaccctcaaccaaagtacactattcttat
taaaaaaaaagcgtgtatgccAACATTTCATAAGTTTGGTTTCTTCCAGA
TATTAATGTCGGAAAGAAGCTCGATTTCAATGTATCAATGCATCAATGTA
TCTTTGATAAAAGTtacttcaaaattcaaatatcA
Run BLAST on NCBI

protein sequence of TCONS_00013424-protein

>TCONS_00013424-protein ID=TCONS_00013424-protein|Name=TCONS_00013424-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MTIENLFKHNPRNKKYSVPPKRKSMILLLLHSGDVNRFSLSDLQRIKLIV
DEKSYSAPISIPKNKNKKMGIIYERDYIKIPKIKKLALIFCKYIRRRTIN
IISIISMDIFKLNGLIINIFKGIFWILTQRNKINDVNI
Run BLAST on NCBI

transcript from alignment at sc0000167:415489..419122-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013424 ID=TCONS_00013424|Name=TCONS_00013424|organism=Clytia hemisphaerica|type=transcript|length=3634bp|location=Sequence derived from alignment at sc0000167:415489..419122- (Clytia hemisphaerica)
TCAAATTGATATAATATATCCAATACTTCATTTGAAGATGAAAGTTGTTT
GCTCAAAAGGTTTTGTGACTTTGTTAAAGAAATTATACCGTCATAATCTT
TTTGTAAAGAGTTGAATGATAAATTTCGCCAAATGTCTTGACAATGTTCT
AACGTATCGTCGTGATATCGAATAAAAGAAGTCTTATTTTTGGACGAAAA
TCGATAATCATTTCGAATGTCACCATTAAAAGTTGGACCATCGTAATCAA
AGATAACATTTTCGTAAAACACCAGAAGTCTTTGACCATATGCCAGATGC
CATGAAGTCATAACAGTAAGACAGACATTGATATCCATTTTGGTGAAATA
AATCCAGTTCATAACTAAATTTTTCTTTATAAAGTCTGTGTTCTTTAAAA
TCCTAAGTGACAGTCAAACATCACAAACTTGTTTTCTAAGTCTAGAAATT
CCAGTGAAATAAAATATATAAAGAAAGTATAGTAAAATCCTCATGACGAT
AGAAAACCTTTTCAAACACAATCCAAGAAATAAGAAGTATTCGGTCCCTC
CAAAAAGGAAAAGTATGATTCTTCTTCTTCTTCACAGCGGAGACGTTAAT
CGATTCTCACTTAGCGACCTACAGCGAATAAAATTGATCGTTGATGAGAA
AAGCTACAGTGCTCCTATTTCAATCCCAAAAAACAAAAACAAAAAAATGG
GAATAATATATGAAAGGGATTATATCAAAATTCCTAAAATAAAGAAATTA
GCCTTGATATTTTGTAAATATATTAGAAGGAGAACCATAAACATTATATC
TATTATATCTATGGATATCTTCAAATTAAATGGATTGATAATCAATATTT
TTAAGGGAATCTTTTGGATACTAACACAAAGGAATAAAATTAACGATGTG
AATATTTGATAGGTCAAGGTTTTTAAATTCGTTATGAAAATAAACTCAGA
ACTTAGTCCTCAGACATGCAGGTATAGTCCGTTCAATCAATTTTTGACGA
CATTTCTGGTCAAAAAATTGAATTTCGATGGTAATTTTCAATTTTCAATT
TTCGAGTTAAAAAATTGAAAATTGAATNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGAAGAGTTAAATATTACGTAAAGGAAATTGC
TCCAGCGTGAAATTTATGCCATAATGTATTTATAGAACCCAAAACTAAAT
TAAGCTGCAAAAGACCTGGAAACTAGGCAGCAACAAATAACAATAAAACC
GGATGAAACACTACTTTTGAGCATCTGTTTTCGTGGAAAAGCAAGCGTGA
TAAAAAATTGGTTTGGTTTTGTCAATTTCAATTTCTCACGACACAATTTT
CAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCAATTTTTTAACTCGAAAATTGAAAATTGAATATTGCCATCGAAAT
TCAATTTTTTGACCAAAAATGTCGTCAAAAATTGAATGAACGAAACATGC
ACACACGCTCAGACTTAAAAAGAATGATCGAAAATTTTCAAATTAGCAGG
TTTTTTGTAATAAAGAAATTATAAAATTTTTTAAAGAAACTGACTTTGGA
CAGCTAGTTTGGTGGGGCGTTGATATGAAAGTTTGGAGTTTGACAAACCA
AATTTACAAGCCTTGCTCAAATTTTGGGAATAAGAATTAAAAAAATTTTT
TCTTTAAATTGAAATTTTAGATGTAACATATTTCTTTTTTTCCTTCTTCA
AAATAACGAGTGTTTAATTTTTAAATTGCATATTTTTCAAACAAAAAAAA
AGCGTCCTATAAATAATATCTCAGTGGGTATGACGATAGAATAATATATC
CTCGTTTACCAATAACAATTTCGTGCAGAAAATTTGAAAAACTATTTTGC
AAAAAAGCAATATTTGTTATTGAAAATGAGGATTTTCAAAACGTAGAAAG
CCACACGCATTCAAAATTGATTTCTGTAACAAAAACACTTTAGCACATTA
TTTTGTTCAAGCTAAGGACTTATCAATAAAATTTTCAATCAATACCCCCT
AGATATCAAAATATTAGTTTATTATAATTTTTCATAAATATCCTAAAAAT
GATAAAAAAAGGAAAATAAATTACCAAAACATTGCAAATAGCTGCAAAAG
TCTTGGGAAAAAAGATTCTAGTAATGTTAGGGTAAAAATATTAAAGACAA
CTACAGAACTACACGCTTTTTCTTTTATAAGAATAACTTCTATAAGAATA
TCAGGGTGAGATTTCGGGTTTAAAACAATAGGCCTATTGTTTAGAACAAT
AGAAAAATAAGAATAATGCTTACCCTCAACCAAAGTACACTATTCTTATT
AAAAAAAAAGCGTGTATGCCAACATTTCATAAGTTTGGTTTCTTCCAGAT
ATTAATGTCGGAAAGAAGCTCGATTTCAATGTATCAATGCATCAATGTAT
CTTTGATAAAAGTTACTTCAAAATTCAAATATCA

Coding sequence (CDS) from alignment at sc0000167:415489..419122-

>TCONS_00013424 ID=TCONS_00013424|Name=TCONS_00013424|organism=Clytia hemisphaerica|type=CDS|length=417bp|location=Sequence derived from alignment at sc0000167:415489..419122- (Clytia hemisphaerica)
ATGACGATAGAAAACCTTTTCAAACACAATCCAAGAAATAAGAAGTATTC
GGTCCCTCCAAAAAGGAAAAGTATGATTCTTCTTCTTCTTCACAGCGGAG
ACGTTAATCGATTCTCACTTAGCGACCTACAGCGAATAAAATTGATCGTT
GATGAGAAAAGCTACAGTGCTCCTATTTCAATCCCAAAAAACAAAAACAA
AAAAATGGGAATAATATATGAAAGGGATTATATCAAAATTCCTAAAATAA
AGAAATTAGCCTTGATATTTTGTAAATATATTAGAAGGAGAACCATAAAC
ATTATATCTATTATATCTATGGATATCTTCAAATTAAATGGATTGATAAT
CAATATTTTTAAGGGAATCTTTTGGATACTAACACAAAGGAATAAAATTA
ACGATGTGAATATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007499XLOC_007499Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013424-proteinTCONS_00013424-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013424-exon-sc0000167-1575043694:418158..419122TCONS_00013424-exon-sc0000167-1575043694:418158..419122Clytia hemisphaericaexon
TCONS_00013424-exon-sc0000167-1575043694:415489..416458TCONS_00013424-exon-sc0000167-1575043694:415489..416458Clytia hemisphaericaexon
TCONS_00013424-exon-sc0000167-1510915933:418158..419122TCONS_00013424-exon-sc0000167-1510915933:418158..419122Clytia hemisphaericaexon
TCONS_00013424-exon-sc0000167-1510915933:415489..416458TCONS_00013424-exon-sc0000167-1510915933:415489..416458Clytia hemisphaericaexon
TCONS_00013424-exon-sc0000167-1491911889:418158..419122TCONS_00013424-exon-sc0000167-1491911889:418158..419122Clytia hemisphaericaexon
TCONS_00013424-exon-sc0000167-1491911889:415489..416458TCONS_00013424-exon-sc0000167-1491911889:415489..416458Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:415489..419122 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.094034	0.0204168	0	0	0.294534	0.224441	0.671958	0.43879	0.06694	0.112865	0.0430766	0.0631339	0.0602419	0	0.113792	0.0275397	0	0.0802706	0.0541654	0	0.0711688	0.114217	0.0865773	0	0	0	0.351345	0.421538	0.43068	0.201756
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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