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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013438 ID=TCONS_00013438|Name=TCONS_00013438|organism=Clytia hemisphaerica|type=transcript|length=1876bp
ccaccttctggtacactgacccccctGCTGCCAAGGAGAACGATAGCACG
CCACCAAAGGGAACAGCTATAGAGGAATAGACAGCCAACGAACCATTTGC
CTTCGGTATTGCAACATAAATATATTTGGTTGACCATAAAAGAAGACATC
GAACCGGTTTTACAGTCTTTGTTTGCCTATGGCTATTAAGAAGGATTTGT
ATGTGATCTCATTTCCAGGTTTCTGCAGCCTTAAGAAAAATCATGTATTT
ATCATTAGCTTTATTTGTGCCATGTCAATCATGAAGTATGTAATTAGTAG
ACCTTTGTTGCATATTATCgctcaagtttttgttaatCATGACATCGTCT
ATGAAAAAGTTTATTTGTTTAAATTTACAACTTTATGGTGAACGAATGCC
AAACTAACCAAACACTAACAACCCCCAAACACTCAAGGAGCAGTAATCAT
CAGCTTCAAAGGAATGAAGAGAGGGAGATGATGATGTTTGGCATGTGGGT
CCACAGAGGGGGATACCACACTGAGACAGAAAATAGGGTGGCAGGTGGCA
GATTATTTTCAAATGTCTGATCATCgctgaaatgttttcaataaaTTTAA
CTAATTATCTTATTGTAATTTTTGACATGTTCCTTTCTCTTTCTGGCTTC
GAGACTAAAAAGCAAATTATGGGGCTGTGTAAACAATCACAAttatcaaa
attgttttttaattttttaatagaACGTGCATTTGAGCGTTATGCCAAGG
CAAAGAGAAAGGCAAACCATAGCCAGCCGACGTCCATGCTAGAGTTTGGG
AATTGTTGTACCTATGGTGGCATATTTCTCAATTTGCCAACAAGAAACAG
AAGAGATTGCAATAGAAAAAGCTCTAAAGGGCAAAATTTACAATCAGATT
TGAGGAGCATGTGTTTCAATTTACTGTAACCAGTTTTAGTTTTAAATctt
aatctttttttcaatgatTATTATTTCGACCACCTACACGTTGATATCGT
ATAATTGGTACTGTGTAATACAGGTGGTATCAGTATCGTCCCCATGACGA
TTTGCTTTTTCTTCACcataaaattattgaaaaatgtgAGAATCAGACCT
TAGGAACGAGATTGAGTGGGTGTATGGAGTgtaaaaaaacctttcgcttg
cgaacggATGGCATCCATTTCAAAAGAGGTTACGCACGTGGTAGGACAAT
GCCACATAGCGAGTACGTCATCATTAATCGGGATTTTCATTCTGTTGGTA
AGTTCCATTTATGCTACTGCAGGATCTTTGAAAGTCGATAGTTAGAATCT
GATCTGATCTGCATCACCAGTCGAAATTTTGTATAAATTGCATTAACAGA
AGTGAAATTATCGGTGTTTTTCGCTAACGACGTTATTGAAGCCGTCTGTC
TGACGTGTTTTTGACTAATTTTGTAACTTAAATATCATTGTTTTGCCGAT
ATCTCAAGTTAggattattttgagtttttggaaTCCGCTATACATGGCTT
tctaaaaacatcaaatattttacattttaaaagtGAATAGACGTACTGTT
TATTGTTCGAAGCGAATTAAGCTCGTTTGTGAGGGTTTCATTTTACTGGC
CATATTTACCTTCGCGGGAAAATTAAGTGGGGTATATTTCGGGCAATGAT
AGAGTCTTTCTTCTATTTAGCTTATGTTAgacatttcaaattatttcgct
TATCTCGCAGTTTAgaattatcaattatttttacaGCGTTGTCAAATCGA
ATGGTAGAGTTGACGTTGTATTCAAATCACGAGACTGGCGCTTGAACGAC
TCATCTCAGTaagttttaaggaaaaattgcaaaaccggcaattatctTAA
AGAACAGCCTTTTACCTTtaagaatc Run BLAST on NCBI transcript from alignment at sc0000167:116666..118541 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013438 ID=TCONS_00013438|Name=TCONS_00013438|organism=Clytia hemisphaerica|type=transcript|length=1876bp|location=Sequence derived from alignment at sc0000167:116666..118541 (Clytia hemisphaerica)
gattcttaAAGGTAAAAGGCTGTTCTTTAagataattgccggttttgcaa
tttttccttaaaacttACTGAGATGAGTCGTTCAAGCGCCAGTCTCGTGA
TTTGAATACAACGTCAACTCTACCATTCGATTTGACAACGCtgtaaaaat
aattgataattcTAAACTGCGAGATAagcgaaataatttgaaatgtcTAA
CATAAGCTAAATAGAAGAAAGACTCTATCATTGCCCGAAATATACCCCAC
TTAATTTTCCCGCGAAGGTAAATATGGCCAGTAAAATGAAACCCTCACAA
ACGAGCTTAATTCGCTTCGAACAATAAACAGTACGTCTATTCacttttaa
aatgtaaaatatttgatgtttttagaAAGCCATGTATAGCGGAttccaaa
aactcaaaataatccTAACTTGAGATATCGGCAAAACAATGATATTTAAG
TTACAAAATTAGTCAAAAACACGTCAGACAGACGGCTTCAATAACGTCGT
TAGCGAAAAACACCGATAATTTCACTTCTGTTAATGCAATTTATACAAAA
TTTCGACTGGTGATGCAGATCAGATCAGATTCTAACTATCGACTTTCAAA
GATCCTGCAGTAGCATAAATGGAACTTACCAACAGAATGAAAATCCCGAT
TAATGATGACGTACTCGCTATGTGGCATTGTCCTACCACGTGCGTAACCT
CTTTTGAAATGGATGCCATccgttcgcaagcgaaaggtttttttacACTC
CATACACCCACTCAATCTCGTTCCTAAGGTCTGATTCTcacatttttcaa
taattttatgGTGAAGAAAAAGCAAATCGTCATGGGGACGATACTGATAC
CACCTGTATTACACAGTACCAATTATACGATATCAACGTGTAGGTGGTCG
AAATAATAatcattgaaaaaaagattaagATTTAAAACTAAAACTGGTTA
CAGTAAATTGAAACACATGCTCCTCAAATCTGATTGTAAATTTTGCCCTT
TAGAGCTTTTTCTATTGCAATCTCTTCTGTTTCTTGTTGGCAAATTGAGA
AATATGCCACCATAGGTACAACAATTCCCAAACTCTAGCATGGACGTCGG
CTGGCTATGGTTTGCCTTTCTCTTTGCCTTGGCATAACGCTCAAATGCAC
GTtctattaaaaaattaaaaaacaattttgataaTTGTGATTGTTTACAC
AGCCCCATAATTTGCTTTTTAGTCTCGAAGCCAGAAAGAGAAAGGAACAT
GTCAAAAATTACAATAAGATAATTAGTTAAAtttattgaaaacatttcag
cGATGATCAGACATTTGAAAATAATCTGCCACCTGCCACCCTATTTTCTG
TCTCAGTGTGGTATCCCCCTCTGTGGACCCACATGCCAAACATCATCATC
TCCCTCTCTTCATTCCTTTGAAGCTGATGATTACTGCTCCTTGAGTGTTT
GGGGGTTGTTAGTGTTTGGTTAGTTTGGCATTCGTTCACCATAAAGTTGT
AAATTTAAACAAATAAACTTTTTCATAGACGATGTCATGattaacaaaaa
cttgagcGATAATATGCAACAAAGGTCTACTAATTACATACTTCATGATT
GACATGGCACAAATAAAGCTAATGATAAATACATGATTTTTCTTAAGGCT
GCAGAAACCTGGAAATGAGATCACATACAAATCCTTCTTAATAGCCATAG
GCAAACAAAGACTGTAAAACCGGTTCGATGTCTTCTTTTATGGTCAACCA
AATATATTTATGTTGCAATACCGAAGGCAAATGGTTCGTTGGCTGTCTAT
TCCTCTATAGCTGTTCCCTTTGGTGGCGTGCTATCGTTCTCCTTGGCAGC
aggggggtcagtgtaccagaaggtgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013438-exon-sc0000167-1491911889:116666..118541 | TCONS_00013438-exon-sc0000167-1491911889:116666..118541 | Clytia hemisphaerica | exon |
| TCONS_00013438-exon-sc0000167-1510915933:116666..118541 | TCONS_00013438-exon-sc0000167-1510915933:116666..118541 | Clytia hemisphaerica | exon |
| TCONS_00013438-exon-sc0000167-1575043694:116666..118541 | TCONS_00013438-exon-sc0000167-1575043694:116666..118541 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000167 | supercontig | sc0000167:116666..118541 . |
Blast
The following BLAST results are available for this feature:
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