TCONS_00013444 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013444
Unique NameTCONS_00013444
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length713

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013444 ID=TCONS_00013444|Name=TCONS_00013444|organism=Clytia hemisphaerica|type=transcript|length=713bp
ATCTCCTTAAAAACACCCATAAAAACTtccttaaatttttttgttcagtc
CCCTGGAGCCTTGAATGACAAGCTTATTGTTAAAAGGTTTGACAATATCA
TTATCAAGGGGAAATAATTCAATAGTACTGGTTGATAAATACTATTTTCA
AGTATTATCATGAGAACAGATATTTATGGGAATCCCCCCTGTTAAGTGGT
AACCCCCTTtaggaaattgaaaataaaagactCCCTTTTAAGTCTTTGTA
AGtctctaggcttctgctcatcgtttaacgaaaaagtttcttatagaggc
tgcTTAATAGTCAGCAAATCTTCTTTCCCACTAAATGTTGCCATTCGCTG
AAATCCATGATACATTttgatttaaacattttcaaaccaAGATGACGGCC
TTAGCGAGAGGAAGGATTTTTGTGTTTCCAAACTTGCTTTGGCTTttgga
ggattttattttagtgtttagagctttttaaagataaatttaTGTTCTGT
TGTATCTATGGTatgtataaagaaaaacttggGTCACAGTTGTCTGAATT
AACGAttcacacacacctaaaattcTTGAGGAGTGCGATCAAACACAGGC
CATAAATTTGGATTCTACTACTAAAGTTATTCATAGCACTCCTCATCACA
TgcctaaagtactttttaggAGTGCAATTTTGGAAtgattctggaatttt
gaaatgacaAAGC
Run BLAST on NCBI

transcript from alignment at sc0000167:245429..246141

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013444 ID=TCONS_00013444|Name=TCONS_00013444|organism=Clytia hemisphaerica|type=transcript|length=713bp|location=Sequence derived from alignment at sc0000167:245429..246141 (Clytia hemisphaerica)
GCTTtgtcatttcaaaattccagaatcaTTCCAAAATTGCACTcctaaaa
agtactttaggcATGTGATGAGGAGTGCTATGAATAACTTTAGTAGTAGA
ATCCAAATTTATGGCCTGTGTTTGATCGCACTCCTCAAgaattttaggtg
tgtgtgaaTCGTTAATTCAGACAACTGTGACccaagtttttctttataca
tACCATAGATACAACAGAACAtaaatttatctttaaaaagctctaaacac
taaaataaaatcctccaaAAGCCAAAGCAAGTTTGGAAACACAAAAATCC
TTCCTCTCGCTAAGGCCGTCATCTtggtttgaaaatgtttaaatcaaAAT
GTATCATGGATTTCAGCGAATGGCAACATTTAGTGGGAAAGAAGATTTGC
TGACTATTAAgcagcctctataagaaactttttcgttaaacgatgagcag
aagcctagagaCTTACAAAGACTTAAAAGGGagtcttttattttcaattt
cctaAAGGGGGTTACCACTTAACAGGGGGGATTCCCATAAATATCTGTTC
TCATGATAATACTTGAAAATAGTATTTATCAACCAGTACTATTGAATTAT
TTCCCCTTGATAATGATATTGTCAAACCTTTTAACAATAAGCTTGTCATT
CAAGGCTCCAGGGgactgaacaaaaaaatttaaggaAGTTTTTATGGGTG
TTTTTAAGGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007514XLOC_007514Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013444-exon-sc0000167-1491911889:245429..246141TCONS_00013444-exon-sc0000167-1491911889:245429..246141Clytia hemisphaericaexon
TCONS_00013444-exon-sc0000167-1510915933:245429..246141TCONS_00013444-exon-sc0000167-1510915933:245429..246141Clytia hemisphaericaexon
TCONS_00013444-exon-sc0000167-1575043694:245429..246141TCONS_00013444-exon-sc0000167-1575043694:245429..246141Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:245429..246141 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.502429	0.331709	0.626622	0.108508	0.923896	0.653797	0.854011	0.793894	0.666274	0.510711	0.424428	0.267318	0.403061	0.194453	0.582835	0.489769	0.156395	0.175318	0.341635	0.313672	0.567719	0.691086	0	0	0.361601	1.49267	0.645312	0.939503	0.417501	1.07845
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013444 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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