Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013451 ID=TCONS_00013451|Name=TCONS_00013451|organism=Clytia hemisphaerica|type=transcript|length=1605bpRun BLAST on NCBI protein sequence of TCONS_00013451-protein >TCONS_00013451-protein ID=TCONS_00013451-protein|Name=TCONS_00013451-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp MNRDLWTPESFERDLGDEQNDIVNCFDGTIMEKMPIREFWRGFEKIKQRPRun BLAST on NCBI transcript from alignment at sc0000168:1014..9786+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013451 ID=TCONS_00013451|Name=TCONS_00013451|organism=Clytia hemisphaerica|type=transcript|length=8773bp|location=Sequence derived from alignment at sc0000168:1014..9786+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000168:1014..9786+ >TCONS_00013451 ID=TCONS_00013451|Name=TCONS_00013451|organism=Clytia hemisphaerica|type=CDS|length=12168bp|location=Sequence derived from alignment at sc0000168:1014..9786+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00013451 vs. Swiss-Prot (Human)
Match: KDM3B (Lysine-specific demethylase 3B OS=Homo sapiens GN=KDM3B PE=1 SV=2) HSP 1 Score: 419.853 bits (1078), Expect = 1.610e-130 Identity = 204/345 (59.13%), Postives = 256/345 (74.20%), Query Frame = 1 Query: 286 QPVIVSNVHKNMNRDLWTPESFERDLGDEQNDIVNCFDGTIMEKMPIREFWRGFEKI--KQRPECKQPVALLKLKDWPPGTDFKEKLPNRFHDIMQALPASPYTHRNGEFNLSARLPDFFVVPDLGPKMYNAYG--SASYPKAGTTNLHLDISDAANVIAYVGIPDDDEEHHQKEIDDTYKTVDKACCD-ATKQRIRDPTVRPGALWHIFPAHSAYKIRRFLRKVAKERGMEKQAMSDPIHDQSFYLDQTLLERLRKEEDVEGYAICQCLGDAVFIPAGAPHQVLNLHSCIKVAEDFVAPEHISHCFQLTQEFRYLSDYHTNHEDKLQIKNIIYHAVKDCLGVVK 1305 QPV+VS VHK + +LW PE+F ++ GD+ D+VNC + I+ + +R+FW GFE I + R E QP+ +LKLKDWPPG DF++ +P RF D+M+ LP YT R+G NL++RLP +FV PDLGPKMYNAYG +A + GTTNLHLD+SDA NV+ YVGIP + H + + KT+D+ D TKQRI D +PGALWHI+ A A KIR LRKV +E+G E DPIHDQS+YLDQTL +RL +E V+G+AI Q LGDAVFIPAGAPHQV NL+SCIKVAEDFV+PEH+ HCF+LTQEFR+LS+ HTNHEDKLQ+KNIIYHAVKD +G +K Sbjct: 1413 QPVLVSGVHKKLKSELWKPEAFSQEFGDQDVDLVNCRNCAIISDVKVRDFWDGFEIICKRLRSEDGQPM-VLKLKDWPPGEDFRDMMPTRFEDLMENLPLPEYTKRDGRLNLASRLPSYFVRPDLGPKMYNAYGLITAEDRRVGTTNLHLDVSDAVNVMVYVGIPIGEGAHDE----EVLKTIDEGDADEVTKQRIHDGKEKPGALWHIYAAKDAEKIRELLRKVGEEQGQENPPDHDPIHDQSWYLDQTLRKRLYEEYGVQGWAIVQFLGDAVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFRLTQEFRHLSNTHTNHEDKLQVKNIIYHAVKDAVGTLK 1752 The following BLAST results are available for this feature:
BLAST of TCONS_00013451 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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