TCONS_00013462 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013462
Unique NameTCONS_00013462
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013462 ID=TCONS_00013462|Name=TCONS_00013462|organism=Clytia hemisphaerica|type=transcript|length=2407bp
gcactccaaatcccataatcttgatataggagtttaagcatAGACTGATA
AGACAGCAAAATGCagtgaaataaaaaagtaaacaaacctgaaCCTTTTG
TCTGTcctaataaagaaaatattctagcTGTAGTAATGTTTACATCCAGA
AATAAATTCATATAATAAATTCAAAACCATACTGCAACATTGCTGGTAAT
GgatttgaacttgaaaaatgtGGGTTCAGTTCCTTGGAAAAGGTCTAATT
ACACTTCCAaatgaattatttttacaaTAACATGAAAGACATGATGAAAG
CTGCTCACTaaaaaattctgattggctaatAGCTATGCCGTCATTTTTCT
CTGCGCCTTACGCAGCCCTGTATTGATTTTTTCATACGTCTTGAAATTCT
CATACACCTTCATAAATTTTCAGACGCCTTCATTTTTTGTGCACCTTCAT
TAATTTATGctttatttttatgaaataacgAGTTCTATAAGAGTTGgtaa
aaagtaaacaagggatggctcATAATAGgaacatttatttttcaattaag
cagagtacactttataagaattagaTCAATAGCTCTTGATGCATGAAGGT
AAAACGATGTAATGTAGGAATATTATAGTGATTGTATATTTTTATCCTGT
AATACATAATATTACTTGATTCCATGTTTGACATAAATGTTGACACcttg
ttgaaaatttgacaaaaatattgacagaataaCAAAATGTGATGGTGTAC
GTTGCAAGCACGTGAGAAAAATGCACAATGTATGTATGTTACTTTAACGT
TGCATTGTAGCCCTCTGGAACAAACATCAGTGTAACCTTAGCTTaagcaa
agattttcaaaaactagGTATCATACCTTGTGGACtcttagaaaaaataa
ctctTTAACTAAATCTTGATCAAACTTTAGGATGCAAATTTTACAAAGAA
ATTTATTATACATAGCAAGATACACTCGATTAAGACAATCCATTTTAAAT
ACTGGAGCTCTTACACGATATGGTTCAATTCCAATATTCAACCAATTTAA
AAAGAGTTGTCTGCTACATACTACATCCAGATGTACCAAAGAGCTTTATA
CTATTGATAAACCTTTCAAATATATTTCTCAAGCTTTAAAAGTTCTGTCA
CAGATGCGAACGATAGACACAGACTttgatgaatttgaatttctagaTGG
AACAAGACAAGCTATAATGCATGTGACTGAAAATTTAGCTGAAGGTAACT
TTGACAAATTGGAGGATCTTACTTCCACTGAGGGCTTAGAAATCCTCAAA
GAACTCTATCACGAGAGAGCTGAAAATTCATCAAGTTTAAAAGTTCAAGa
aaatcaacaaaatttgaattatctgtcaaATGAAAAAACGAAATGGTTAT
TCCAATGTTGAATCGTCAATCTGGAagggttttgaaaaatttatttcaag
ctACTTCTAAAAGAAATGGGTCTATTTCTCCtgcaattcaaaattttatc
ttgAAAAAGGAGGATACAAACCTGATCATACGAGGCTTCCAAACAAGTGC
TTTAAGACTCAACGAGGAGCAGCCCAAAGTTCAAACAAAAGTAATGACTG
TAACCAACCCAATAAAGTATATTTCTTTGAAGATCAAGATGTTATTAATG
AAAGGTTACTTTGATGACAAATTCAGTGAAAAGGATTTCTTGACTGGGGC
AAGACAAGCTATCATTTTTGTCTCAAGTAAAATGGCAAAAGGAGATTTGA
AAGATCTTACTGAAGTTCTCACGCAGGAAGGTTCGCGATctgttcaaaat
cttttttcagaaaACCGCGATAACTCTGAGGTTTTAAATGTAGAAGATTC
AGACATTATGACTTTAACGCTGAATGATATTGGTTTTGAGTATGGTGAGT
CTGGACGCAAATGGGCGTATGCCTTAGTTGTTTGTTATTGTTCAGGAAAG
GATAGCTTTTCCAAACAAGCctctgattttgattttgagattttggttTC
TCAGCCGAGGATTATTAAGTATTCTTTTTGTCGAGAGTATACCCCTGGTA
CAAGCCATGGATGGCTGGTCGACCAAGTTGACCATCTCAATTTAAGTGGT
acaaaagaatgaaaaattccTTTTAGACGATATGGATACTTGAAATCTTG
TGTTGTATTGGTTTTGATTTAAATAGcgttttaacatttttgaatctgct
tattattttaaaattttcgtgtAATTAGTTttattgaatttcttttgaaa
tttgtattttctaatttttgtacAGTAACTTCAATTAGGCTACTTTTCAG
CTAACTAAGCCAATGGGAGTCTTTCTCGCTTTGGGCATTTCGTTTGTATT
AGAGGGAGGCTATTACAGGTTATCACAAtctttagaaataaaaaaactga
atCTTGA
Run BLAST on NCBI

protein sequence of TCONS_00013462-protein

>TCONS_00013462-protein ID=TCONS_00013462-protein|Name=TCONS_00013462-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
MVIPMLNRQSGRVLKNLFQATSKRNGSISPAIQNFILKKEDTNLIIRGFQ
TSALRLNEEQPKVQTKVMTVTNPIKYISLKIKMLLMKGYFDDKFSEKDFL
TGARQAIIFVSSKMAKGDLKDLTEVLTQEGSRSVQNLFSENRDNSEVLNV
EDSDIMTLTLNDIGFEYGESGRKWAYALVVCYCSGKDSFSKQASDFDFEI
LVSQPRIIKYSFCREYTPGTSHGWLVDQVDHLNLSGTKE
Run BLAST on NCBI

transcript from alignment at sc0000168:193186..196078+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013462 ID=TCONS_00013462|Name=TCONS_00013462|organism=Clytia hemisphaerica|type=transcript|length=2893bp|location=Sequence derived from alignment at sc0000168:193186..196078+ (Clytia hemisphaerica)
gcactccaaatcccataatcttgatataggagtttaagcatAGACTGATA
AGACAGCAAAATGCagtgaaataaaaaagtaaacaaacctgaaCCTTTTG
TCTGTcctaataaagaaaatattctagcTGTAGTAATGTTTACATCCAGA
AATAAATTCATATAATAAATTCAAAACCATACTGCAACATTGCTGGTAAT
GgatttgaacttgaaaaatgtGGGTTCAGTTCCTTGGAAAAGGTCTAATT
ACACTTCCAaatgaattatttttacaaTAACATGAAAGACATGATGAAAG
CTGCTCACTaaaaaattctgattggctaatAGCTATGCCGTCATTTTTCT
CTGCGCCTTACGCAGCCCTGTATTGATTTTTTCATACGTCTTGAAATTCT
CATACACCTTCATAAATTTTCAGACGCCTTCATTTTTTGTGCACCTTCAT
TAATTTATGctttatttttatgaaataacgAGTTCTATAAGAGTTGgtaa
aaagtaaacaagggatggctcATAATAGgaacatttatttttcaattaag
cagagtacactttataagaattagaTCAATAGCTCTTGATGCATGAAGGT
AAAACGATGTAATGTAGGAATATTATAGTGATTGTATATTTTTATCCTGT
AATACATAATATTACTTGATTCCATGTTTGACATAAATGTTGACACcttg
ttgaaaatttgacaaaaatattgacagaataaCAAAATGTGATGGTGTAC
GTTGCAAGCACGTGAGAAAAATGCACAATGTATGTATGTTACTTTAACGT
TGCATTGTAGCCCTCTGGAACAAACATCAGTGTAACCTTAGCTTaagcaa
agattttcaaaaactagGTATCATACCTTGTGGACtcttagaaaaaataa
ctctTTAACTAAATCTTGATCAAACTTTAGGATGCAAATTTTACAAAGAA
ATTTATTATACATAGCAAGATACACTCGATTAAGACAATCCATTTTAAAT
ACTGGAGCTCTTACACGATATGGTTCAATTCCAATATTCAACCAATTTAA
AAAGAGTTGTCTGCTACATACTACATCCAGATGTACCAAAGAGCTTTATA
CTATTGATAAACCTTTCAAATATATTTCTCAAGCTTTAAAAGTTCTGTCA
CAGATGCGAACGATAGACACAGACTttgatgaatttgaatttctagaTGG
AACAAGACAAGCTATAATGCATGTGACTGAAAATTTAGCTGAAGGTAACT
TTGACAAATTGGAGGATCTTACTTCCACTGAGGGCTTAGAAATCCTCAAA
GAACTCTATCACGAGAGAGCTGAAAATTCATCAAGTTTAAAAGTTCAAGG
TGAGGACATAATAGTTGTGGTACCTGTTGGTCTTGTTCAAGACGACCAAA
ACTTTGTCAGTGTTTTGGTAGATTGCTGCTGCAGAGAACCAAGAATTGTT
AGATGCTCTTTTCGTCGAAATTTTGAATTACAGCAAGGTTGGCTGGTTGA
TTCTTTGCATTATTCAAAGTGAATCTGAGTGAATAGgaaattgatcaaaa
ttttgtaaataagaTTTTATATTAAAGAAAGTACaatataaattgttttt
ttttcttcattggaACCATAAAGGTTCTAGTTCTATGTCTTAAAAAGAGA
ACATTGCCAGATCTATTGTTGAAAGATAATACTAATGTAACAAACACCGC
TGGCTGCTGGGGAGATTAGAATTAGattaaaatctttgtttgaaaaaaat
aagttgATAAGTTTATTCTGGATTTAGTTTTCACCGTTCAATATATCTTT
GAAAACTAAATGTTTTATTCCTCTATTTTATttagaaaatcaacaaaatt
tgaattatctgtcaaATGAAAAAACGAAATGGTTATTCCAATGTTGAATC
GTCAATCTGGAagggttttgaaaaatttatttcaagctACTTCTAAAAGA
AATGGGTCTATTTCTCCtgcaattcaaaattttatcttgAAAAAGGAGGA
TACAAACCTGATCATACGAGGCTTCCAAACAAGTGCTTTAAGACTCAACG
AGGAGCAGCCCAAAGTTCAAACAAAAGTAATGACTGTAACCAACCCAATA
AAGTATATTTCTTTGAAGATCAAGATGTTATTAATGAAAGGTTACTTTGA
TGACAAATTCAGTGAAAAGGATTTCTTGACTGGGGCAAGACAAGCTATCA
TTTTTGTCTCAAGTAAAATGGCAAAAGGAGATTTGAAAGATCTTACTGAA
GTTCTCACGCAGGAAGGTTCGCGATctgttcaaaatcttttttcagaaaA
CCGCGATAACTCTGAGGTTTTAAATGTAGAAGATTCAGACATTATGACTT
TAACGCTGAATGATATTGGTTTTGAGTATGGTGAGTCTGGACGCAAATGG
GCGTATGCCTTAGTTGTTTGTTATTGTTCAGGAAAGGATAGCTTTTCCAA
ACAAGCctctgattttgattttgagattttggttTCTCAGCCGAGGATTA
TTAAGTATTCTTTTTGTCGAGAGTATACCCCTGGTACAAGCCATGGATGG
CTGGTCGACCAAGTTGACCATCTCAATTTAAGTGGTacaaaagaatgaaa
aattccTTTTAGACGATATGGATACTTGAAATCTTGTGTTGTATTGGTTT
TGATTTAAATAGcgttttaacatttttgaatctgcttattattttaaaat
tttcgtgtAATTAGTTttattgaatttcttttgaaatttgtattttctaa
tttttgtacAGTAACTTCAATTAGGCTACTTTTCAGCTAACTAAGCCAAT
GGGAGTCTTTCTCGCTTTGGGCATTTCGTTTGTATTAGAGGGAGGCTATT
ACAGGTTATCACAAtctttagaaataaaaaaactgaatCTTGA

Coding sequence (CDS) from alignment at sc0000168:193186..196078+

>TCONS_00013462 ID=TCONS_00013462|Name=TCONS_00013462|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at sc0000168:193186..196078+ (Clytia hemisphaerica)
ATGGTTATTCCAATGTTGAATCGTCAATCTGGAagggttttgaaaaattt
atttcaagctACTTCTAAAAGAAATGGGTCTATTTCTCCtgcaattcaaa
attttatcttgAAAAAGGAGGATACAAACCTGATCATACGAGGCTTCCAA
ACAAGTGCTTTAAGACTCAACGAGGAGCAGCCCAAAGTTCAAACAAAAGT
AATGACTGTAACCAACCCAATAAAGTATATTTCTTTGAAGATCAAGATGT
TATTAATGAAAGGTTACTTTGATGACAAATTCAGTGAAAAGGATTTCTTG
ACTGGGGCAAGACAAGCTATCATTTTTGTCTCAAGTAAAATGGCAAAAGG
AGATTTGAAAGATCTTACTGAAGTTCTCACGCAGGAAGGTTCGCGATctg
ttcaaaatcttttttcagaaaACCGCGATAACTCTGAGGTTTTAAATGTA
GAAGATTCAGACATTATGACTTTAACGCTGAATGATATTGGTTTTGAGTA
TGGTGAGTCTGGACGCAAATGGGCGTATGCCTTAGTTGTTTGTTATTGTT
CAGGAAAGGATAGCTTTTCCAAACAAGCctctgattttgattttgagatt
ttggttTCTCAGCCGAGGATTATTAAGTATTCTTTTTGTCGAGAGTATAC
CCCTGGTACAAGCCATGGATGGCTGGTCGACCAAGTTGACCATCTCAATT
TAAGTGGTacaaaagaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007523XLOC_007523Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013462-proteinTCONS_00013462-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013462-exon-sc0000168-1491911889:193186..194534TCONS_00013462-exon-sc0000168-1491911889:193186..194534Clytia hemisphaericaexon
TCONS_00013462-exon-sc0000168-1510915933:193186..194534TCONS_00013462-exon-sc0000168-1510915933:193186..194534Clytia hemisphaericaexon
TCONS_00013462-exon-sc0000168-1575043694:193186..194534TCONS_00013462-exon-sc0000168-1575043694:193186..194534Clytia hemisphaericaexon
TCONS_00013462-exon-sc0000168-1491911889:195021..196078TCONS_00013462-exon-sc0000168-1491911889:195021..196078Clytia hemisphaericaexon
TCONS_00013462-exon-sc0000168-1510915933:195021..196078TCONS_00013462-exon-sc0000168-1510915933:195021..196078Clytia hemisphaericaexon
TCONS_00013462-exon-sc0000168-1575043694:195021..196078TCONS_00013462-exon-sc0000168-1575043694:195021..196078Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168supercontigsc0000168:193186..196078 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.6158	10.4072	12.0551	11.2851	33.364	22.6849	18.9802	20.0791	18.8405	15.9064	30.0363	14.0104	6.80734	8.05579	11.2176	11.2248	22.4683	23.2505	5.04484	5.15616	17.6343	15.7214	16.0922	17.2574	14.2784	14.6841	9.33174	6.56568	7.04233	5.81541
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007379Tim44-like_dom
IPR032710NTF2-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013462 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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