TCONS_00013474 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013474
Unique NameTCONS_00013474
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length741

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013474 ID=TCONS_00013474|Name=TCONS_00013474|organism=Clytia hemisphaerica|type=transcript|length=741bp
AATCTAGTGAAAGTCAATTAAATTCTCAAAATGATGAGAATAAAAAGCAG
AATATTTTATCACAAAACAGCCAATCGTCTAACAATTCACAGGAAAATTG
GAACAAACCAAAAACGATTAAACTTGGTCTCAGTAGAGCTAATTGTAATG
GGAAAGGAGCTAGCTCTTTTATCAATAAAAgcgaaaaatcacaaaagatt
ACAAACATGTTaagtaaatttaaaaatatttctaaagagCCATCAGAAGA
ATCTTCAAAAGACATCACTTCATCTTGCAAAGAAGATTCTCCAGTTGTAA
CCCTAAAGAATGAAAGCTTATTAACACCAGCAGTTGGTCTGTGTGGACAA
AAATCGACCTCCTGTTCATCTTCATTGAAGggCTCAAGAAGCAGCATTTT
AAATGGACCAAACAAACGAAGCAGACCCATCGGactaagcaaaaagaaaa
atacttcAACTTTATCTTCTACGACCGATGGCAAAATACAAGCTAAACTC
TCATTCAATAAATTTGCTTACCAGAAAAAGTCATCACTCACAGCCACCAA
AAGTAAAATTTCAACTGATGACGAAGGGGTTATTTGTTTggattaaatca
aatataaagaTAATTGAGTGGTTAACGAGGGTTTCAATATAAAGATTTGA
ATTAGTACCAcctgtctcgattattcaagtTTTAGATACATCAAGCTTAG
TTTTAAGAGGCTTCCGGCttatttatgttttaaaaatgttc
Run BLAST on NCBI

protein sequence of TCONS_00013474-protein

>TCONS_00013474-protein ID=TCONS_00013474-protein|Name=TCONS_00013474-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
SSESQLNSQNDENKKQNILSQNSQSSNNSQENWNKPKTIKLGLSRANCNG
KGASSFINKSEKSQKITNMLSKFKNISKEPSEESSKDITSSCKEDSPVVT
LKNESLLTPAVGLCGQKSTSCSSSLKGSRSSILNGPNKRSRPIGLSKKKN
TSTLSSTTDGKIQAKLSFNKFAYQKKSSLTATKSKISTDDEGVICLD
Run BLAST on NCBI

transcript from alignment at sc0000168:406121..407411+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013474 ID=TCONS_00013474|Name=TCONS_00013474|organism=Clytia hemisphaerica|type=transcript|length=1291bp|location=Sequence derived from alignment at sc0000168:406121..407411+ (Clytia hemisphaerica)
AATCTAGTGAAAGTCAATTAAATTCTCAAAATGATGAGAATAAAAAGCAG
AATATTTTATCACAAAACAGCCAATCGTCTAACAATTCACAGGAAAATTG
GAACAAACCAAAAACGATTAAACTTGGTCTCAGTAGAGCTAATTGTAATG
GGAAAGGAGCTAGCTCTTTTATCAATAAAAgcgaaaaatcacaaaagatt
ACAAACATGTTaagtaaatttaaaaatatttctaaagagCCATCAGAAGA
ATCTTCAAAAGACATCACTTCATCTTGCAAAGAAGATTCTCCAGTTGTAA
CCCTAAAGAATGAAAGCTTATTAACACCAGCAGTTGGTCTGTGTGGACAA
AAATCGACCTCCTGTTCATCTTCATTGAAGGTATAGTCACATGCTATTCT
TTCTTTCATTGCAAACATAAAACGATGTCAAAATTTTCCTCTCTAAAAAA
AGACTTCTCATCGAGGCTTTCAGCTAAAGAGTGCAAAGTTTCTGCTTCAA
CCCCAGCACGGTGCTCAGCATATaggagaaggatcaagggtaaatggAAA
AAATCCCGGGGAAAGGGTGACGCTCTCTTCCACCCTACCAAGGCCATTAT
TATACATAATTATGTGAAAATTTGGTTAAATATTCTATACAATctttaaa
ttttccatttttttctccagggCTCAAGAAGCAGCATTTTAAATGGTAAG
ATTTAGCTTTgttatttaatattttatttttcaagtgaGTGACGTCAAAA
TTGTGAAtattttgcaattctttggTGTGGGCTGTTCAGAAGAGATGTGT
AAAATATGAAAACCAtgtactttttagtttttttaatggaagataacttt
taaaatattgatacaTGGCTCTGGTTCTTAAATCGAGCACTGTTATGGCA
TTGATTTACCACACttgttttaaaatataaaacctttcaaaatttaactt
ttcagGACCAAACAAACGAAGCAGACCCATCGGactaagcaaaaagaaaa
atacttcAACTTTATCTTCTACGACCGATGGCAAAATACAAGCTAAACTC
TCATTCAATAAATTTGCTTACCAGAAAAAGTCATCACTCACAGCCACCAA
AAGTAAAATTTCAACTGATGACGAAGGGGTTATTTGTTTggattaaatca
aatataaagaTAATTGAGTGGTTAACGAGGGTTTCAATATAAAGATTTGA
ATTAGTACCAcctgtctcgattattcaagtTTTAGATACATCAAGCTTAG
TTTTAAGAGGCTTCCGGCttatttatgttttaaaaatgttc

Coding sequence (CDS) from alignment at sc0000168:406121..407411+

>TCONS_00013474 ID=TCONS_00013474|Name=TCONS_00013474|organism=Clytia hemisphaerica|type=CDS|length=1782bp|location=Sequence derived from alignment at sc0000168:406121..407411+ (Clytia hemisphaerica)
TCTAGTGAAAGTCAATTAAATTCTCAAAATGATGAGAATAAAAAGCAGAA
TATTTTATCACAAAACAGCCAATCGTCTAACAATTCACAGGAAAATTGGA
ACAAACCAAAAACGATTAAACTTGGTCTCAGTAGAGCTAATTGTAATGGG
AAAGGAGCTAGCTCTTTTATCAATAAAAgcgaaaaatcacaaaagattAC
AAACATGTTaagtaaatttaaaaatatttctaaagagCCATCAGAAGAAT
CTTCAAAAGACATCACTTCATCTTGCAAAGAAGATTCTCCAGTTGTAACC
CTAAAGAATGAAAGCTTATTAACACCAGCAGTTGGTCTGTGTGGACAAAA
ATCGACCTCCTGTTCATCTTCATTGAAGggCTCAAGAAGCAGCATTTTAA
ATGGACCAAACAAACGAAGCAGACCCATCGGactaagcaaaaagaaaaat
acttcAACTTTATCTTCTACGACCGATGGCAAAATACAAGCTAAACTCTC
ATTCAATAAATTTGCTTACCAGAAAAAGTCATCACTCACAGCCACCAAAA
GTAAAATTTCAACTGATGACGAAGGGGTTATTTGTTTggattaaTCTAGT
GAAAGTCAATTAAATTCTCAAAATGATGAGAATAAAAAGCAGAATATTTT
ATCACAAAACAGCCAATCGTCTAACAATTCACAGGAAAATTGGAACAAAC
CAAAAACGATTAAACTTGGTCTCAGTAGAGCTAATTGTAATGGGAAAGGA
GCTAGCTCTTTTATCAATAAAAgcgaaaaatcacaaaagattACAAACAT
GTTaagtaaatttaaaaatatttctaaagagCCATCAGAAGAATCTTCAA
AAGACATCACTTCATCTTGCAAAGAAGATTCTCCAGTTGTAACCCTAAAG
AATGAAAGCTTATTAACACCAGCAGTTGGTCTGTGTGGACAAAAATCGAC
CTCCTGTTCATCTTCATTGAAGggCTCAAGAAGCAGCATTTTAAATGGAC
CAAACAAACGAAGCAGACCCATCGGactaagcaaaaagaaaaatacttcA
ACTTTATCTTCTACGACCGATGGCAAAATACAAGCTAAACTCTCATTCAA
TAAATTTGCTTACCAGAAAAAGTCATCACTCACAGCCACCAAAAGTAAAA
TTTCAACTGATGACGAAGGGGTTATTTGTTTggattaaTCTAGTGAAAGT
CAATTAAATTCTCAAAATGATGAGAATAAAAAGCAGAATATTTTATCACA
AAACAGCCAATCGTCTAACAATTCACAGGAAAATTGGAACAAACCAAAAA
CGATTAAACTTGGTCTCAGTAGAGCTAATTGTAATGGGAAAGGAGCTAGC
TCTTTTATCAATAAAAgcgaaaaatcacaaaagattACAAACATGTTaag
taaatttaaaaatatttctaaagagCCATCAGAAGAATCTTCAAAAGACA
TCACTTCATCTTGCAAAGAAGATTCTCCAGTTGTAACCCTAAAGAATGAA
AGCTTATTAACACCAGCAGTTGGTCTGTGTGGACAAAAATCGACCTCCTG
TTCATCTTCATTGAAGggCTCAAGAAGCAGCATTTTAAATGGACCAAACA
AACGAAGCAGACCCATCGGactaagcaaaaagaaaaatacttcAACTTTA
TCTTCTACGACCGATGGCAAAATACAAGCTAAACTCTCATTCAATAAATT
TGCTTACCAGAAAAAGTCATCACTCACAGCCACCAAAAGTAAAATTTCAA
CTGATGACGAAGGGGTTATTTGTTTggattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007530XLOC_007530Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013474-proteinTCONS_00013474-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013474-exon-sc0000168-1491911889:406121..406500TCONS_00013474-exon-sc0000168-1491911889:406121..406500Clytia hemisphaericaexon
TCONS_00013474-exon-sc0000168-1510915933:406121..406500TCONS_00013474-exon-sc0000168-1510915933:406121..406500Clytia hemisphaericaexon
TCONS_00013474-exon-sc0000168-1575043694:406121..406500TCONS_00013474-exon-sc0000168-1575043694:406121..406500Clytia hemisphaericaexon
TCONS_00013474-exon-sc0000168-1491911889:406791..406815TCONS_00013474-exon-sc0000168-1491911889:406791..406815Clytia hemisphaericaexon
TCONS_00013474-exon-sc0000168-1510915933:406791..406815TCONS_00013474-exon-sc0000168-1510915933:406791..406815Clytia hemisphaericaexon
TCONS_00013474-exon-sc0000168-1575043694:406791..406815TCONS_00013474-exon-sc0000168-1575043694:406791..406815Clytia hemisphaericaexon
TCONS_00013474-exon-sc0000168-1491911889:407076..407411TCONS_00013474-exon-sc0000168-1491911889:407076..407411Clytia hemisphaericaexon
TCONS_00013474-exon-sc0000168-1510915933:407076..407411TCONS_00013474-exon-sc0000168-1510915933:407076..407411Clytia hemisphaericaexon
TCONS_00013474-exon-sc0000168-1575043694:407076..407411TCONS_00013474-exon-sc0000168-1575043694:407076..407411Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168supercontigsc0000168:406121..407411 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.0748	20.9399	11.4771	9.89882	20.2347	13.5735	12.6891	14.1269	5.56343	5.70787	5.47263	2.9757	3.72555	4.19144	4.61982	4.10439	6.30782	5.79825	1.77226	0.815997	3.6752	2.73613	23.3211	18.8387	9.45112	11.8855	1.37163	2.53732	10.7326	14.9317
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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