TCONS_00013480 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013480
Unique NameTCONS_00013480
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length705

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013480 ID=TCONS_00013480|Name=TCONS_00013480|organism=Clytia hemisphaerica|type=transcript|length=705bp
TTTCGTTGAAgatgccattttagtttagtatAAAGCACTATAATAACGAT
GTATGTTAACAACTCCAAACCCTTGCCGTCCAAAAACATCCATAATGTTG
CCATCATCCATTCGAATCCAGCACCATCCAGCAGACGCTGAATCATAATT
ATCGCCTAACTTCCTAAGAAATAACGCTAACAAATTGATGAATAAAGGTA
TAAGCCAGGATATCAAGTGAAACCATGGATGAATCAATCGAATGGCTAAA
GATGGCTTCTCTCTGTCCAATgagataaagagaaaaatggCTAGCATCAT
AGTCCACATAAAGGAACAATTGATAGCTGTTGACCCAACAAAACTTTGGA
TTATACAATTTTCCATAAAATGTTCATCCTTTTGGTTTACAAAATAAGCA
GAGTATAAGTTAGCCATTGCTTGAAACATATCAGCTATGCTTATACAAAC
AATAATGTGACGTGAGGGTGAACGAATATCTTTATAGAGAGCGTACGTTG
TGATGATAAGGATACTACCAAGAATGGATAGACTGCAGGTAAGGACGATG
ATGATTTGTGCATGAAATTTGAATAATTCACTGAGCATGTCATTCGCAgc
catctttattttcttatgaaATCTTCTTCTATTTGTTaccttcttttgtt
ctttttcattttcatttacaaAATTGTTCGTTTGTTCGCCCTaaatacaa
aaaag
Run BLAST on NCBI

transcript from alignment at sc0000168:452197..453258+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013480 ID=TCONS_00013480|Name=TCONS_00013480|organism=Clytia hemisphaerica|type=transcript|length=1062bp|location=Sequence derived from alignment at sc0000168:452197..453258+ (Clytia hemisphaerica)
TTTCGTTGAAgatgccattttagtttagtatAAAGCACTATAATAACGAT
GTATGTTAACAACTCCAAACCCTTGCCGTCCAAAAACATCCATAATGTTG
CATGAGctagacaaaaaaaaagaattaatatAATATTTGGGTAGAGATAA
ACTCAACCAAAAAAAACCCCCAACCTAGTAAAATCGAATTCAGAAAGAAG
TTAGTTTGCACTCAGAAGAAAAATCTATCTTTTGGGAGAGCACCTGATGa
ttggtaaaaaaatttcacttggaGCAATTAGAATCAGGCTATTTCTTCAC
TTAAGATTTAAAGCGCATATGCCTTCATactagccagtaccttcccaccg
acaaatttttttatttgtctgTTAACCGCTCAACAAACTATCCTATGCAG
CTGGGAGATTCTgggaatattcttaaaatgaaTAAAGATTGTAAAATAAA
TATGATACCATCATCCATTCGAATCCAGCACCATCCAGCAGACGCTGAAT
CATAATTATCGCCTAACTTCCTAAGAAATAACGCTAACAAATTGATGAAT
AAAGGTATAAGCCAGGATATCAAGTGAAACCATGGATGAATCAATCGAAT
GGCTAAAGATGGCTTCTCTCTGTCCAATgagataaagagaaaaatggCTA
GCATCATAGTCCACATAAAGGAACAATTGATAGCTGTTGACCCAACAAAA
CTTTGGATTATACAATTTTCCATAAAATGTTCATCCTTTTGGTTTACAAA
ATAAGCAGAGTATAAGTTAGCCATTGCTTGAAACATATCAGCTATGCTTA
TACAAACAATAATGTGACGTGAGGGTGAACGAATATCTTTATAGAGAGCG
TACGTTGTGATGATAAGGATACTACCAAGAATGGATAGACTGCAGGTAAG
GACGATGATGATTTGTGCATGAAATTTGAATAATTCACTGAGCATGTCAT
TCGCAgccatctttattttcttatgaaATCTTCTTCTATTTGTTaccttc
ttttgttctttttcattttcatttacaaAATTGTTCGTTTGTTCGCCCTa
aatacaaaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007533XLOC_007533Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013480-exon-sc0000168-1491911889:452197..452297TCONS_00013480-exon-sc0000168-1491911889:452197..452297Clytia hemisphaericaexon
TCONS_00013480-exon-sc0000168-1510915933:452197..452297TCONS_00013480-exon-sc0000168-1510915933:452197..452297Clytia hemisphaericaexon
TCONS_00013480-exon-sc0000168-1575043694:452197..452297TCONS_00013480-exon-sc0000168-1575043694:452197..452297Clytia hemisphaericaexon
TCONS_00013480-exon-sc0000168-1491911889:452655..453258TCONS_00013480-exon-sc0000168-1491911889:452655..453258Clytia hemisphaericaexon
TCONS_00013480-exon-sc0000168-1510915933:452655..453258TCONS_00013480-exon-sc0000168-1510915933:452655..453258Clytia hemisphaericaexon
TCONS_00013480-exon-sc0000168-1575043694:452655..453258TCONS_00013480-exon-sc0000168-1575043694:452655..453258Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168supercontigsc0000168:452197..453258 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.42402	1.57208	0.446959	0.961127	1.4082	0.0393936	1.05513	0.231691	1.42114	0.289722	0.227475	0.172265	0.877861	0	0	0	1.83105	0	1.93766	0.376975	2.27568	2.81189	1.65146	2.34711	1.29732	1.24383	9.54813	9.69813	2.73359	0.000163329
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022343GCR1-cAMP_receptor
IPR000832GPCR_2_secretin-like
IPR017981GPCR_2-like
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO:0004888transmembrane signaling receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
GO:0007166cell surface receptor signaling pathway
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007166 cell surface receptor signaling pathway
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
molecular_function GO:0004888 transmembrane signaling receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013480 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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