TCONS_00013481 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013481
Unique NameTCONS_00013481
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013481 ID=TCONS_00013481|Name=TCONS_00013481|organism=Clytia hemisphaerica|type=transcript|length=507bp
ACAACACTTAACGAAGATCACCATTGGCACATTGTCACCATCAGGGCCAA
AAGACATAAAAACTCGGTCGAGTTTCAATACCATGGCACTGCTGGGTTCG
CCAAAAACTTTATCGAAGAGGTTAATATTAAGAAAGCGATAAAAGGTGCT
TTTGAAAATCGTTTTGATAGAGAGGTCACTGAATACATTCCACCTAATAA
TAAGGTGGCACCTCGAGAGCAAGCAGCAACAAGCTCCCCAGATCAGACGG
CAACAGCAAGTTCCTCGAAACAAACCGCACCCAAAGAAGCAATGGTAGCC
ACCACGTTTGCGTTGGAGGTGGTGGACGAAGGGGACGTTCTTCTTGATTA
ATTGATGTGTTGTTTcttaaaaacttatttttactcgattttcattttat
cctttaccatttttctacatttttagtGGTTTTACctaaagggaactaat
tttcatggAATTAATTTTGAAGAAAGGTCATTTCAAAGAGCAATTtagaa
aactttc
Run BLAST on NCBI

protein sequence of TCONS_00013481-protein

>TCONS_00013481-protein ID=TCONS_00013481-protein|Name=TCONS_00013481-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
TTLNEDHHWHIVTIRAKRHKNSVEFQYHGTAGFAKNFIEEVNIKKAIKGA
FENRFDREVTEYIPPNNKVAPREQAATSSPDQTATASSSKQTAPKEAMVA
TTFALEVVDEGDVLLD
Run BLAST on NCBI

transcript from alignment at sc0000168:37549..38402-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013481 ID=TCONS_00013481|Name=TCONS_00013481|organism=Clytia hemisphaerica|type=transcript|length=854bp|location=Sequence derived from alignment at sc0000168:37549..38402- (Clytia hemisphaerica)
ACAACACTTAACGAAGATCACCATTGGCACATTGTCACCATCAGGGCCAA
AAGACATAAAAACTCGGTCGAGTTTCAATACCATGGCACTGCTGGGTTCG
CCAAAAACTTTATCGAAGAGGTTAATATTAAGAAAGCGATAAAAGGTGCT
TTTGAAAATCGTTTTGATAGAGGTAGGTATTTCTATATTATACATTTGAA
GAAATTCAAAGAAATTTCTGTCCAACTATCTTCTATCAAGAGATTTGGGT
GGCAGAGCAGCATATGCATATATAGATCAAAGACCATGCAATGAAAATAC
AACTTGCTATCCTAAACCTTTCATCACTATTAAAATACAAAGTTTTCCGG
AAATTTCCCGAAAAAAACGGTCATTTGCGGTTTTCTCGAGATCTTCTCAT
TAGATTTTTCTGTTTTTGTTGCACAAAGGCTGAAGATGCACTCAAATGTT
GCCAAAAGGTGTATTAGCATCGAAAATCCTGCTCTAGTGCCTGTTATATT
TCTTTACTTCTCTTTTTAGAGGTCACTGAATACATTCCACCTAATAATAA
GGTGGCACCTCGAGAGCAAGCAGCAACAAGCTCCCCAGATCAGACGGCAA
CAGCAAGTTCCTCGAAACAAACCGCACCCAAAGAAGCAATGGTAGCCACC
ACGTTTGCGTTGGAGGTGGTGGACGAAGGGGACGTTCTTCTTGATTAATT
GATGTGTTGTTTCTTAAAAACTTATTTTTACTCGATTTTCATTTTATCCT
TTACCATTTTTCTACATTTTTAGTGGTTTTACCTAAAGGGAACTAATTTT
CATGGAATTAATTTTGAAGAAAGGTCATTTCAAAGAGCAATTTAGAAAAC
TTTC

Coding sequence (CDS) from alignment at sc0000168:37549..38402-

>TCONS_00013481 ID=TCONS_00013481|Name=TCONS_00013481|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0000168:37549..38402- (Clytia hemisphaerica)
AGGTCACTGAATACATTCCACCTAATAATAAGGTGGCACCTCGAGAGCAA
GCAGCAACAAGCTCCCCAGATCAGACGGCAACAGCAAGTTCCTCGAAACA
AACCGCACCCAAAGAAGCAATGGTAGCCACCACGTTTGCGTTGGAGGTGG
TGGACGAAGGGGACGTTCTTCTTGATTAAACAACACTTAACGAAGATCAC
CATTGGCACATTGTCACCATCAGGGCCAAAAGACATAAAAACTCGGTCGA
GTTTCAATACCATGGCACTGCTGGGTTCGCCAAAAACTTTATCGAAGAGG
TTAATATTAAGAAAGCGATAAAAGGTGCTTTTGAAAATCGTTTTGATAGA
GAGGTCACTGAATACATTCCACCTAATAATAAGGTGGCACCTCGAGAGCA
AGCAGCAACAAGCTCCCCAGATCAGACGGCAACAGCAAGTTCCTCGAAAC
AAACCGCACCCAAAGAAGCAATGGTAGCCACCACGTTTGCGTTGGAGGTG
GTGGACGAAGGGGACGTTCTTCTTGATTAAACAACACTTAACGAAGATCA
CCATTGGCACATTGTCACCATCAGGGCCAAAAGACATAAAAACTCGGTCG
AGTTTCAATACCATGGCACTGCTGGGTTCGCCAAAAACTTTATCGAAGAG
GTTAATATTAAGAAAGCGATAAAAGGTGCTTTTGAAAATCGTTTTGATAG
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007534XLOC_007534Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013481-proteinTCONS_00013481-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013481-exon-sc0000168-1575043694:38231..38402TCONS_00013481-exon-sc0000168-1575043694:38231..38402Clytia hemisphaericaexon
TCONS_00013481-exon-sc0000168-1575043694:37549..37883TCONS_00013481-exon-sc0000168-1575043694:37549..37883Clytia hemisphaericaexon
TCONS_00013481-exon-sc0000168-1510915933:38231..38402TCONS_00013481-exon-sc0000168-1510915933:38231..38402Clytia hemisphaericaexon
TCONS_00013481-exon-sc0000168-1510915933:37549..37883TCONS_00013481-exon-sc0000168-1510915933:37549..37883Clytia hemisphaericaexon
TCONS_00013481-exon-sc0000168-1491911889:38231..38402TCONS_00013481-exon-sc0000168-1491911889:38231..38402Clytia hemisphaericaexon
TCONS_00013481-exon-sc0000168-1491911889:37549..37883TCONS_00013481-exon-sc0000168-1491911889:37549..37883Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168supercontigsc0000168:37549..38402 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.100324	0	0	0.0792885	0.158357	0	1.55485	2.10388	0.804353	0.916039	1.39211	0.397295	0.920856	0.336871	0.409511	0.620508	0	0	0.163245	0	0.792836	0.673145
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013481 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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