TCONS_00013500 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013500
Unique NameTCONS_00013500
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1807

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013500 ID=TCONS_00013500|Name=TCONS_00013500|organism=Clytia hemisphaerica|type=transcript|length=1807bp
ACCTGCTCAATGTCCAGATGGAAAATTTAGCCCTGGAATTTGCTCAGATT
GCATTGATTGCGCTGCTGGGTTTAGCTGTAAATCTGGAATTGTTTATTGT
CCAAATGAAAATACAACAGCTCCAGTGCCATGTCCTCTAGGAACGTTTGC
TAATGAATCTAATGCAATCCAATGTAATGATTGCCCTATCGGTCACGCTT
GTAGTAACACATCCATAACACCAGTGCTTTGTACCGATGGAAGTTATAGT
TTAGGAAAAGCAAGTGAATGCACACAATGCCCAGCTGGAAGAAGCTGTGT
ATCTGGTAAGATTTCAAGCTGCCCTAAAGGAACTCACTCAAATGTTGGTC
AATCCTCTTGTGCACCATGCACAATAGGAAATTATTGTCCAAATGAAAAT
ACAACAGCTCCAGTGCCATGTCCTCTATGGACATTTGCTAACGAATCTAA
TGCAATCCAATGCACTGATTGTCCAGCAGGGTTCCAGTGTAGCGACACTT
CTCTAACTCCAGTGGAATGTGCTGATGGAACTTACAGTCTAAGTAAAAGG
AGTGAATGTGTGCAGTGTCCAGCTGGGAAAAGCTGCACTGATAAATCAGT
GGAACCAGTGATATGTTTGAAAGGTTCATACTCACCTGCTGGTGTAAAAG
ATTGTATACCATGTGGAGTTGGTCACTACTGTCCATCTGACGGCTCCCAT
CAACAATCCCCATGTGCTATAGGCTGGTATGCAACATCTCCAGGGTCTGA
CAAATGTTTGCAATGTGATAGAGGCAATAAATGTCCAGATCCAACCTCAC
CACCAGAACAATGTGGACCAGGTGTCCACCGGGATATTATACAACTGAAA
ATGGGACTGCTCATTGCACCATATGTCCTGAAGGCAACAAATGTCCTATA
CCTCATAATCTACCAATTCCATGCTCAGAAGGAGAGtaCCAACCAGAAGA
AGGGAAAGACTTTTGTTTACCAGTGCCCTCTGGTCTTGTTGTCACAGATG
GAAAAACACCCAAAGAATGCCAGGCTGGTGAATATTCAAATGGTACTGCT
TGTGTTGAATGTCCTAAAGGATTTTACTGTCCCTCTTCAACCACCACCCC
CATTGTCTGCAAAGCTGGTACCTACGCCAATGCATTGTCAAGTACATCAT
GTCAATTGTGTCCCTCTGGTTACTCATGTTTGAACGCTGCTGATGCACCA
GTAGCATGTACCGCTGGAAGTTATAGTGTTGCTGGCCAAATTAAATGCAC
CactTGTCCAACAGGCCAATTCAGTTACAACACAGCATCATCTTGCTCAC
CGTGTCCTGGAGGTTCTTATTGCACTAATGGAACAGCTCCCATTGTCCCT
CCTTTACCATGTGCTTTTGGGTTCTACAGTGTTGTTGGTCAAGGCCAATG
TAAAGAATGTCCACAGCACACATACACGCCTGGTTTTGGAGCACAGTTTT
GCACACCTTGTCCAGTGGGTTCAACGTGCGATGATCCAACAGCCATCCCT
ATACCCTGCTCTGATGGTACTTATTGGTCAAATGCTGACGAGACGCCAAA
ATGTATAGCATGTCCGGCAGGTTATTCATGTGAAGATGCAAAAGTTCCAC
CTGTTCCCTGCAAAAAAGGATTCTATTCCACTGGTGGTAATTCAACCTGT
TTACCGTGTCCTGAAGGTTATTCATGTCTGGATTCCACGCAACCTGTCAG
CTGTAAAATTGGAGAATATAGTTTATCGggtGTTGAGTATTGTACGCCAT
GTCCACCAGGTTTTTCTTGCCCAACACCTAACCAAGCAGCTGGTCCATGT
CCAGCNN
Run BLAST on NCBI

transcript from alignment at sc0000168:156544..161227-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013500 ID=TCONS_00013500|Name=TCONS_00013500|organism=Clytia hemisphaerica|type=transcript|length=4684bp|location=Sequence derived from alignment at sc0000168:156544..161227- (Clytia hemisphaerica)
ACCTGCTCAATGTCCAGATGGAAAATTTAGCCCTGGAATTTGCTCAGATT
GCATTGATTGCGCTGCTGGGTTTAGGTATACATTATTCAATGTCAATATT
TTTGTTGAGCAATCATTTAGAAAACTTATTGTTTCATGCAATCAGATGCA
ATGCATATCATCATCATCATCATTAGATCAAAGTTAAGTTGATTGATCAT
ATCAATGGTACTTTTATTATCTATTTGGACTCAAGTTACCTTCTTTTCTT
TTAAGCTGTAAATCTGGAATTGTTTATTGTCCAAATGAAAATACAACAGC
TCCAGTGCCATGTCCTCTAGGAACGTTTGCTAATGAATCTAATGCAATCC
AATGTAATGATTGCCCTATCGGTCACGCTTGTAGTAACACATCCATAACA
CCAGTGCTTTGTACCGATGGAAGTTATAGTTTAGGAAAAGCAAGTGAATG
CACACAATGCCCAGCTGGAAGAAGGTAATAAATTTTCTTCAAACAAGCCC
ATTAAACTCTCCTTTGAAATCTTTCTGTTTTATGAATTTATACTGTCATT
TCATCATCAATGCTGTTTGAATGTAAAAACTCTTATTATTTTCCTTCTAG
CTGTGTATCTGGTAAGATTTCAAGCTGCCCTAAAGGAACTCACTCAAATG
TTGGTCAATCCTCTTGTGCACCATGCACAATAGGAAATTATTGTCCAAAT
GAAAATACAACAGCTCCAGTGCCATGTCCTCTATGGACATTTGCTAACGA
ATCTAATGCAATCCAATGCACTGATTGTCCAGCAGGGTTCCAGTGTAGCG
ACACTTCTCTAACTCCAGTGGAATGTGCTGATGGAACTTACAGTCTAAGT
AAAAGGAGTGAATGTGTGCAGTGTCCAGCTGGGAAAAGGTATGACTTTTT
GTTTGTTTTTTGAAAAAGAAGTTTGAAGTTTTAAATTTCATTTAAATAAC
TTGTTTAGTCGTTTTTTCAAAAACTTCTAAACTTTAAGTCGCTTTTGAAG
GTAGCTTTTTTTTGATTTTTTTTCTAATAACTTTGTGATATGTTTCTTTT
CAGGTAACTTTTGTTAGCCAGTCAGTTTTAGACAGAAAATGCACCCAATG
ATTTGCTAACAAAACTAATTTAACATTTCACCTTTCGTTTATTTTTTCTT
GTTTCATTTACTTTAATTCTGTTCCATTTGTTTTGGATTCTAGAGTCATT
ACTTAGCAATTTATAACTTTGTGTTCATTTAATGATAGTATAATTCATAT
TTTTATTTCAGCTGCACTGATAAATCAGTGGAACCAGTGATATGTTTGAA
AGGTTCATACTCACCTGCTGGTGTAAAAGATTGTATACCATGTGGAGTTG
GTCACTACTGTCCATCTGACGGCTCCCATCAACAATCCCCATGTGCTATA
GGCTGGTATGCAACATCTCCAGGGTCTGACAAATGTTTGCAATGTGATAG
AGGTACAGTGTATATTTTGTTTCAAAAGTGTCTCTGAATTATGTTTTTAA
TAATAACAGCAATAACATAATAAATACAATGACTTTTAAAAACTACAATA
TTTTTCCACTCCTAGGCAATAAATGTCCAGATCCAACCTCACCACCAGAA
CAATGTGGACCAGGGTACTATGTAGATGCGACTGGATTGACTTCATGGGA
TCATCCCCCCCCAGGAAGATGGGGGGGGAATCAGATTTTGGTGCCAGGGG
GGAAGTGAATTCCAAGCTTGATGGGGGGAGAAAGGCGAATTGGGGGTATA
TTCAGTCCTCCACCTAGTGGGGGGAGTAATAGGATAAATAAAGACCTTCC
TGGTGTGTTTGGGCATTCAGGCTTATGAGCCTGTCTTTCTAGGGATGTTG
AGAGTCTTTTTTTTTTGCTATAGTAGCTTGCGAATTGAGGCGAGTCTGGA
TCATCACTTCGCAACCCTTATACAATACGGCTAGGGGGATTTCCCAATTG
GGGGGAGCACAAATTTTAGAGACAGGTGGGGGGAAAAGGCCAGATGGGGG
ATTTTAGCTCTTATTAAGGGGGACCAAAAAGCTGGAGGACGCCATGGACT
TATTGTGTGCCTGTAGGTCTTTATTTAATTTCTTTCCAAAAGTTTTTAAT
GCTTAAGCTCAAATAGATTTATAAAATTTTATTAGCTCTGTTAACACTTA
TTAATATCTGCTTCAAATATTTTTAAAAGAACACCAATTTCTTTCGATTT
GATTTCAGTGTCCACCGGGATATTATACAACTGAAAATGGGACTGCTCAT
TGCACCATATGTCCTGAAGGCAACAAATGTCCTATACCTCATAATCTACC
AATTCCATGCTCAGAAGGAGAGGTAAACAAGTTCAAATGAATGATTGATC
CTAAATGTTTTTAAGAAGTGCTGCTTATTGTTTGCAACAAGACCTTTGGA
AACAAGACCTTTAGAAACAAAAGTATTTTGATTCTGTTTAGTTGTATTAA
TAGTATAGTCACGCCAGAAATATAAACCATTTTGAAAAAAACTATTGATT
ACTTTATTCTTTTGTTTTTAGTACCAACCAGAAGAAGGGAAAGACTTTTG
TTTACCAGTGCCCTCTGGTCTTGTTGTCACAGATGGAAAAACACCCAAAG
AATGCCAGGTACTTTAGACTTTTTTAATCTTTATACTTATTGATTTATTT
AAGATGCTTTAGCTCAAGCTTTCCCTTTTTAAGCTACTTTGAATAGCAAC
TGAAGTATGTGGACCATTTTGATTGATCTAGCTAGAGGAATTCTGAAGAC
AATGGTGTTTGGAGGGCTGTGAATTTTTCATTACTGTAATTTCCATAACA
CTTTTGTAGGCTGGTGAATATTCAAATGGTACTGCTTGTGTTGAATGTCC
TAAAGGATTTTACTGTCCCTCTTCAACCACCACCCCCATTGTCTGCAAAG
CTGGTACCTACGCCAATGCATTGTCAAGTACATCATGTCAATTGTGTCCC
TCTGGTTACTCATGTTTGAACGCTGCTGATGCACCAGTAGCATGTACCGC
TGGAAGTTATAGTGTTGCTGGCCAAATTAAATGCACCGTAAGATTTTTAA
TGAATTATTATGTCATTTCTGAATTATTTGTACGATACCAAAATTCTAAC
CTTGTTTTTTGCAATTTTGAGAGGCCAAAACATAGTGATTACGACAGTGG
CGCAACCATTTCATACTTATTTTACCTAGGAATTTAGAGTCTTGAAAACT
TGGAAAGGAAAAACTGAAAATTCCTATACCATTGAAAGAAAGTTGATTGT
TCTTAAAGTTTATATATAATATTTTGATATTATTTATTTTTTCAGACTTG
TCCAACAGGCCAATTCAGTTACAACACAGCATCATCTTGCTCACCGTGTC
CTGGAGGTTCTTATTGCACTAATGGAACAGCTCCCATTGTCCCTCCTTTA
CCATGTGCTTTTGGGTTCTACAGTGTTGTTGGTCAAGGCCAATGTAAAGA
ATGTCCACAGCGTGAGTGATTGTTATATTGCCTCCATATAGTGGTTCACA
TGACTAATTTAGTTCAATATAAAAATAAGTACCTTACAAAATCAATAGTT
ATACTGTGACTTTCATCTTTGGTATTGGAATTAGGCACTTTTCAAATAGA
GGATTAATCAATAATTTCATACGACAAAAAGGTCAATTTCATGATTTCAT
AAATATAATGGAAGTACAAGATTTTCGATTTTCCAAAACACTTGAGATTG
AACCTTTTGTCATGTGAACGACGATATAAAGGTCATGCAGTTATCACAAA
ATTTCTTAGCCATTGGTTTTGAAGGATTTCAATAAGATTTCCAAATTTTC
CCCTAGAAATATATTTTTCGTAGTTTATTTATTACTCTATTCTTGTTTTT
ATCTAAAACATTTTAGACACATACACGCCTGGTTTTGGAGCACAGTTTTG
CACACCTTGTCCAGTGGGTTCAACGTGCGATGATCCAACAGCCATCCCTA
TACCCTGCTCTGATGGTACTTATTGGTCAAATGCTGACGAGGTAGGTTCC
TTTTGATTGTCTAGCGGTCCAAAGTGTTTATTCATCCTCTCTTCTTTTAC
CAATTCTAAGTGCTATATAAACTACTTTGATAATTTTAGTATAATTACAA
TAGATACATATTAGACAAATGCTTTTCATTCATTATAGACGCCAAAATGT
ATAGCATGTCCGGCAGGTTATTCATGTGAAGATGCAAAAGTTCCACCTGT
TCCCTGCAAAAAAGGATTCTATTCCACTGGTGGTAATTCAACCTGTTTAC
CGTGTCCTGAAGGTTATTCATGTCTGGATTCCACGCAACCTGTCAGCTGT
AAAATTGGAGAATATAGTTTATCGGTAAGCTTATTAAAACTCTTGCAATG
TATATCCAGTTTTATCTTATGCTATACTCGAATACTTCTGGAACACTTAG
TTTTAAGAACAGTTACATAATAATAATAATAGGACACGAGGCTCAAAAGA
ACAAAGTAATGACAAGCTAAGTATTAGATTTCAGAAATGGCTATAAATGC
CATTTCTATATTGTATAACTCCTATATTGAGCTCTTAAGCAAAGAAACTT
ACTACTGCTTATTAACAGAAAAATCTTTAATCATTGTGATTTTTTTCTTT
TTTAGGGTGTTGAGTATTGTACGCCATGTCCACCAGGTTTTTCTTGCCCA
ACACCTAACCAAGCAGCTGGTCCATGTCCAGCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007540XLOC_007540Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013500-exon-sc0000168-1575043694:161153..161227TCONS_00013500-exon-sc0000168-1575043694:161153..161227Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1575043694:160754..160972TCONS_00013500-exon-sc0000168-1575043694:160754..160972Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1575043694:160340..160627TCONS_00013500-exon-sc0000168-1575043694:160340..160627Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1575043694:159776..159966TCONS_00013500-exon-sc0000168-1575043694:159776..159966Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1575043694:159614..159662TCONS_00013500-exon-sc0000168-1575043694:159614..159662Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1575043694:158906..159019TCONS_00013500-exon-sc0000168-1575043694:158906..159019Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1575043694:158620..158706TCONS_00013500-exon-sc0000168-1575043694:158620..158706Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1575043694:158191..158418TCONS_00013500-exon-sc0000168-1575043694:158191..158418Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1575043694:157767..157932TCONS_00013500-exon-sc0000168-1575043694:157767..157932Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1575043694:157237..157361TCONS_00013500-exon-sc0000168-1575043694:157237..157361Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1575043694:156904..157089TCONS_00013500-exon-sc0000168-1575043694:156904..157089Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1575043694:156544..156622TCONS_00013500-exon-sc0000168-1575043694:156544..156622Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1510915933:161153..161227TCONS_00013500-exon-sc0000168-1510915933:161153..161227Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1510915933:160754..160972TCONS_00013500-exon-sc0000168-1510915933:160754..160972Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1510915933:160340..160627TCONS_00013500-exon-sc0000168-1510915933:160340..160627Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1510915933:159776..159966TCONS_00013500-exon-sc0000168-1510915933:159776..159966Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1510915933:159614..159662TCONS_00013500-exon-sc0000168-1510915933:159614..159662Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1510915933:158906..159019TCONS_00013500-exon-sc0000168-1510915933:158906..159019Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1510915933:158620..158706TCONS_00013500-exon-sc0000168-1510915933:158620..158706Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1510915933:158191..158418TCONS_00013500-exon-sc0000168-1510915933:158191..158418Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1510915933:157767..157932TCONS_00013500-exon-sc0000168-1510915933:157767..157932Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1510915933:157237..157361TCONS_00013500-exon-sc0000168-1510915933:157237..157361Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1510915933:156904..157089TCONS_00013500-exon-sc0000168-1510915933:156904..157089Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1510915933:156544..156622TCONS_00013500-exon-sc0000168-1510915933:156544..156622Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1491911889:161153..161227TCONS_00013500-exon-sc0000168-1491911889:161153..161227Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1491911889:160754..160972TCONS_00013500-exon-sc0000168-1491911889:160754..160972Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1491911889:160340..160627TCONS_00013500-exon-sc0000168-1491911889:160340..160627Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1491911889:159776..159966TCONS_00013500-exon-sc0000168-1491911889:159776..159966Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1491911889:159614..159662TCONS_00013500-exon-sc0000168-1491911889:159614..159662Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1491911889:158906..159019TCONS_00013500-exon-sc0000168-1491911889:158906..159019Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1491911889:158620..158706TCONS_00013500-exon-sc0000168-1491911889:158620..158706Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1491911889:158191..158418TCONS_00013500-exon-sc0000168-1491911889:158191..158418Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1491911889:157767..157932TCONS_00013500-exon-sc0000168-1491911889:157767..157932Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1491911889:157237..157361TCONS_00013500-exon-sc0000168-1491911889:157237..157361Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1491911889:156904..157089TCONS_00013500-exon-sc0000168-1491911889:156904..157089Clytia hemisphaericaexon
TCONS_00013500-exon-sc0000168-1491911889:156544..156622TCONS_00013500-exon-sc0000168-1491911889:156544..156622Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168supercontigsc0000168:156544..161227 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0444084	0	0	0.319739	0.0445135	0	0.12608	0	0	0.109708	0.464484	0	0.0355059	0	0	0	0.0620497	0.392657	0.491314	0	0	0	0	0.179309	0	0.141255	0.0433796	0.145595	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013500 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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