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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013512 ID=TCONS_00013512|Name=TCONS_00013512|organism=Clytia hemisphaerica|type=transcript|length=1985bpRun BLAST on NCBI protein sequence of TCONS_00013512-protein >TCONS_00013512-protein ID=TCONS_00013512-protein|Name=TCONS_00013512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=634bp MGRHLSTILSVLLLVVLANAHPHRHRYDGLDPQCPVSITTNRQSCAAMRLRun BLAST on NCBI transcript from alignment at sc0000168:428742..436220- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013512 ID=TCONS_00013512|Name=TCONS_00013512|organism=Clytia hemisphaerica|type=transcript|length=7479bp|location=Sequence derived from alignment at sc0000168:428742..436220- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000168:428742..436220- >TCONS_00013512 ID=TCONS_00013512|Name=TCONS_00013512|organism=Clytia hemisphaerica|type=CDS|length=17145bp|location=Sequence derived from alignment at sc0000168:428742..436220- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013512 vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 8.613e-29 Identity = 116/482 (24.07%), Postives = 214/482 (44.40%), Query Frame = 3
Query: 582 YWETDDAFTQRRLAGICPIFMKKVYCDE-TEKRGITFERLESVLNMRFFENFKMKINDHVELTIEQALADERLFVQYIDEMDDFMNSIDLTDANRTDSRQLRKVRSPIAVFILKEDGNLAVVAIQ--EDPNNDSRVLTPSNSQAQEWLLLKAQVEQTAIQYCHGKVHLGSVHFVTTIYCLSFRRHLSTRHPLYNFFKYHCEGTVPHITLTFNSVTEKGESIDQIFAVGANGPRILAKKAIDERNYETFTFDGFIKGQGMDDRR-IKYYPFRDDAAVLLAEYGRFAKEWVESIYDHHNCIKDDHELQGWVAEL-SDSSKG-KMVGFPTTFYKKKQLETFLQRFLW-YNVIHTAVNY-----------ATPEFRPVSPIKLYEDKSGIPLT-LLQSLPSAVHSLTATTFLGTLASFRINRIF-GYW--EQITDQKFRKIIRKYQHRLITNVQKTLAQRNAQRKANNQLGYQYLEPRWLTNSIHI 1961
+W+ D F + L G P+ +++ C E EK +T E +E L +L++EQ + +F+ DF +D DAN+TD L+ + +PI + + +AIQ + P +++ + PS+++ +WLL K V + HL H V+ ++ ++ R L HP++ H T+ T + + D+ A G G + ++A+ + Y + F IK +GM+ + I YY +RDD ++ F E V+ Y+ +++D ELQ +V ++ +G K GFP + ++QL +L ++ + H AVN+ A P R P K + + ++ +LP S + L+ F+ N +F G + E ++ ++ + +++ L + +A+RN ++ QL Y YL P + NS+ I
Sbjct: 226 HWQEDLMFGYQFLNGCNPVLIRR--CTELPEKLPVTTEMVECSLER--------------QLSLEQEVQQGNIFIV------DF-ELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPSDAK-YDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPPTA----KGVVTIEQIVDTLPDRGRSCWHLGAVWALSQFQENELFLGMYPEEHFIEKPVKEAMARFRKNL-EAIVSVIAERNKKK----QLPYYYLSPDRIPNSVAI 674 The following BLAST results are available for this feature:
BLAST of TCONS_00013512 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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