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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013524 ID=TCONS_00013524|Name=TCONS_00013524|organism=Clytia hemisphaerica|type=transcript|length=1071bp
TGGGTTATTACAAGAAATCATTCCAAAATGGGGAAAATCATGGCTCATAA
AAGTCTCATTCAAAGTTGTAAAGCCACCAATAGCGGACTGgaattgtatt
tttcattttgtaaaagatgGAGGCGACTTTGACCGTCTACCGACAATGTA
CTTCGATTCTGGCAGAAACGAGGTAGAATTTTTTCTTTGCCAAAACCCTA
CAAATCGTAATCTTTGTCGAGCTACTTACCTACCGTCacttgtttataaa
aaatacgatatcgaAATCAAACATCAATTGGAAGGAAATGGATATTATAT
GTCTGTTTACATCAATGGCGTACTGGAAAAACGTGACTTTACTTTTACCA
ACCCAGGAGTTTTCGAGAATGTTGAAGTGTATATTGGACCATGGTTTTCG
TGGGATCAACACACTAATTGGAGTGTTGAAGTATCGAATCTTATGTTTGC
CAACATCGATTAAATATTTCGACAAGAAGagaggccggtctccactttcg
cgcgaaatgggcaaCAGTtattttcttaaccttttttgcctgaagaaaag
attacgtcataaaaaagtttcgtgtgaacaagaaaaaagttgaaggatgt
tctacttttttcatccgttacgtcaatttcgaccaatgaaatttctatat
ttttcaaCCGActaatgaccttacaaaaacttcaaaaagttttcgctcat
gtcgcgcgaaagtggagaccggccctAAGACCATTTTCGCACGTGATGAA
ATGAAATAaagtcattctattggttagaagtgacgtaaaacatgaatgta
accaatagaatggcttcattgcAAAATATTTGCAATGAAAAAGGGggttg
caaaatattttttggcaaCTCAAGAGATAACTCAGGAGGTCAAATTTCAT
GGTttcaccatagtataagaaagccgcggctttcttatactatggtttcA
GATTTGaagattaaaaacatttttcggcCTAGGGGCCAACATTATTTGTA
TATCGTTTCATTGTTAGTTCTGTATTCATCAAATATCATTGTGATAGCCT
CACTATTTCTGTTCCTTGGTC Run BLAST on NCBI protein sequence of TCONS_00013524-protein >TCONS_00013524-protein ID=TCONS_00013524-protein|Name=TCONS_00013524-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
GLLQEIIPKWGKSWLIKVSFKVVKPPIADWNCIFHFVKDGGDFDRLPTMY
FDSGRNEVEFFLCQNPTNRNLCRATYLPSLVYKKYDIEIKHQLEGNGYYM
SVYINGVLEKRDFTFTNPGVFENVEVYIGPWFSWDQHTNWSVEVSNLMFA
NID Run BLAST on NCBI transcript from alignment at sc0000168:121870..122940 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013524 ID=TCONS_00013524|Name=TCONS_00013524|organism=Clytia hemisphaerica|type=transcript|length=1071bp|location=Sequence derived from alignment at sc0000168:121870..122940 (Clytia hemisphaerica)
GACCAAGGAACAGAAATAGTGAGGCTATCACAATGATATTTGATGAATAC
AGAACTAACAATGAAACGATATACAAATAATGTTGGCCCCTAGgccgaaa
aatgtttttaatcttCAAATCTgaaaccatagtataagaaagccgcggct
ttcttatactatggtgaaACCATGAAATTTGACCTCCTGAGTTATCTCTT
GAGttgccaaaaaatattttgcaaccCCCTTTTTCATTGCAAATATTTTg
caatgaagccattctattggttacattcatgttttacgtcacttctaacc
aatagaatgacttTATTTCATTTCATCACGTGCGAAAATGGTCTTagggc
cggtctccactttcgcgcgacatgagcgaaaactttttgaagtttttgta
aggtcattagTCGGttgaaaaatatagaaatttcattggtcgaaattgac
gtaacggatgaaaaaagtagaacatccttcaacttttttcttgttcacac
gaaacttttttatgacgtaatcttttcttcaggcaaaaaaggttaagaaa
ataACTGttgcccatttcgcgcgaaagtggagaccggcctctCTTCTTGT
CGAAATATTTAATCGATGTTGGCAAACATAAGATTCGATACTTCAACACT
CCAATTAGTGTGTTGATCCCACGAAAACCATGGTCCAATATACACTTCAA
CATTCTCGAAAACTCCTGGGTTGGTAAAAGTAAAGTCACGTTTTTCCAGT
ACGCCATTGATGTAAACAGACATATAATATCCATTTCCTTCCAATTGATG
TTTGATTtcgatatcgtattttttataaacaagtGACGGTAGGTAAGTAG
CTCGACAAAGATTACGATTTGTAGGGTTTTGGCAAAGAAAAAATTCTACC
TCGTTTCTGCCAGAATCGAAGTACATTGTCGGTAGACGGTCAAAGTCGCC
TCcatcttttacaaaatgaaaaatacaattcCAGTCCGCTATTGGTGGCT
TTACAACTTTGAATGAGACTTTTATGAGCCATGATTTTCCCCATTTTGGA
ATGATTTCTTGTAATAACCCA Coding sequence (CDS) from alignment at sc0000168:121870..122940 >TCONS_00013524 ID=TCONS_00013524|Name=TCONS_00013524|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at sc0000168:121870..122940 (Clytia hemisphaerica)
TTAATCGATGTTGGCAAACATAAGATTCGATACTTCAACACTCCAATTAG
TGTGTTGATCCCACGAAAACCATGGTCCAATATACACTTCAACATTCTCG
AAAACTCCTGGGTTGGTAAAAGTAAAGTCACGTTTTTCCAGTACGCCATT
GATGTAAACAGACATATAATATCCATTTCCTTCCAATTGATGTTTGATTt
cgatatcgtattttttataaacaagtGACGGTAGGTAAGTAGCTCGACAA
AGATTACGATTTGTAGGGTTTTGGCAAAGAAAAAATTCTACCTCGTTTCT
GCCAGAATCGAAGTACATTGTCGGTAGACGGTCAAAGTCGCCTCcatctt
ttacaaaatgaaaaatacaattcCAGTCCGCTATTGGTGGCTTTACAACT
TTGAATGAGACTTTTATGAGCCATGATTTTCCCCATTTTGGAATGATTTC
TTGTAATAACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013524-exon-sc0000168-1491911889:121870..122940 | TCONS_00013524-exon-sc0000168-1491911889:121870..122940 | Clytia hemisphaerica | exon |
| TCONS_00013524-exon-sc0000168-1510915933:121870..122940 | TCONS_00013524-exon-sc0000168-1510915933:121870..122940 | Clytia hemisphaerica | exon |
| TCONS_00013524-exon-sc0000168-1575043694:121870..122940 | TCONS_00013524-exon-sc0000168-1575043694:121870..122940 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000168 | supercontig | sc0000168:121870..122940 . |
Blast
The following BLAST results are available for this feature:
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